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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.9   PAM1   plant adhesion molecule 1 
 ath-u.5   PAM1   plant adhesion molecule 1 
 ath-r.7   PAM1   plant adhesion molecule 1 
 ath-e.2   PAM1   plant adhesion molecule 1 
 ath-m.4.bio   PAM1   plant adhesion molecule 1 
 ath-m.4.hor   PAM1   plant adhesion molecule 1 
 ath-m.4.lig   PAM1   plant adhesion molecule 1 
 ath-m.4.str   PAM1   plant adhesion molecule 1 
 ath-m.4.tis   PAM1   plant adhesion molecule 1 
 ath-u.5   AT3G02460   Ypt/Rab-GAP domain of gyp1p superfamily protein 
 bra-r.6   103858958   ecotropic viral integration site 5 protein homolog 
 bra-r.6   103851015   TBC1 domain family member 10B 
 bna-r.1   111213235   ecotropic viral integration site 5 protein homolog 
 bna-r.1   106438932   ecotropic viral integration site 5 protein homolog 
 bna-r.1   106390406   TBC1 domain family member 10B 
 ghi-r.1   107930507   EVI5-like protein 
 ghi-r.1   107916727   EVI5-like protein 
 cit-r.1   102607554   uncharacterized LOC102607554 
 gma-u.5   100792187   ecotropic viral integration site 5 protein homolog 
 gma-u.5   100778662   Rab-GTPase-TBC domain-containing protein 
 vvi-u.5   100260077   uncharacterized LOC100260077 
 ppo-u.5   7468375   uncharacterized LOC7468375 
 ppo-u.5   18107430   uncharacterized LOC18107430 
 mtr-u.5   25495518   EVI5-like protein 
 sly-u.5   101262565   putative plant adhesion protein 
 sot-r.1   102586750   EVI5-like protein 
 nta-r.1   107812048   uncharacterized LOC107812048 
 nta-r.1   107761476   uncharacterized LOC107761476 
 osa-u.5   4345560   uncharacterized LOC4345560 
 zma-u.5   100272252   USP6-like protein 
 tae-r.2   123087236   EVI5-like protein 
 tae-r.2   123090723   EVI5-like protein 
 hvu-r.1   123447208   ecotropic viral integration site 5 protein homolog 
 sbi-r.1   8081217   EVI5-like protein 
 bdi-r.1   100839878   TBC1 domain family member 10A 
 bdi-r.1   100846928   ecotropic viral integration site 5 protein homolog 
 cre-r.1   CHLRE_17g727450v5   uncharacterized protein 

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Top 50 coexpressed genes to PAM1 (ath-m.9 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to PAM1 (ath-m.9 coexpression data)

CoexMap"831450"


athPAM1 | Entrez gene ID : 831450      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 10 2 3 2 1 2 1 2 1 1 1 2 1 1 2 1 1 2 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO:0005737 [list] [network] cytoplasm  (14000 genes)  ISM  
GO MF
Protein NP_197097.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 5,  nucl 1,  cyto 1,  cyto_nucl 1  (predict for NP_197097.1)
Subcellular
localization
TargetP
other 8,  mito 3  (predict for NP_197097.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.9
for
PAM1
ath-u.5
for
PAM1
ath-r.7
for
PAM1
ath-e.2
for
PAM1
ath-m.4.bio
for
PAM1
ath-m.4.hor
for
PAM1
ath-m.4.lig
for
PAM1
ath-m.4.str
for
PAM1
ath-m.4.tis
for
PAM1
ath-u.5
for
AT3G02460
bra-r.6
for
103858958
bra-r.6
for
103851015
bna-r.1
for
111213235
bna-r.1
for
106438932
bna-r.1
for
106390406
ghi-r.1
for
107930507
ghi-r.1
for
107916727
cit-r.1
for
102607554
gma-u.5
for
100792187
gma-u.5
for
100778662
vvi-u.5
for
100260077
ppo-u.5
for
7468375
ppo-u.5
for
18107430
mtr-u.5
for
25495518
sly-u.5
for
101262565
sot-r.1
for
102586750
nta-r.1
for
107812048
nta-r.1
for
107761476
osa-u.5
for
4345560
zma-u.5
for
100272252
tae-r.2
for
123087236
tae-r.2
for
123090723
hvu-r.1
for
123447208
sbi-r.1
for
8081217
bdi-r.1
for
100839878
bdi-r.1
for
100846928
cre-r.1
for
CHLRE_17g727450v5


Ortholog ID: 7579
Species ath ath bra bra bna bna bna ghi ghi cit gma gma vvi ppo ppo mtr sly sot nta nta osa zma tae tae hvu sbi bdi bdi cre
Symbol PAM1 AT3G02460 LOC103858958 LOC103851015 LOC106438932 LOC106390406 LOC125582120 LOC107930507 LOC107916727 LOC102607554 LOC100792187 LOC100778662 LOC100260077 LOC7468375 LOC18107430 LOC25495518 LOC101262565 LOC102586750 LOC107812048 LOC107761476 LOC4345560 LOC100272252 LOC123087236 LOC123090723 LOC123447208 LOC8081217 LOC100839878 LOC100846928 CHLRE_17g727450v5
Function* plant adhesion molecule 1 Ypt/Rab-GAP domain of gyp1p superfamily protein ecotropic viral integration site 5 protein homolog TBC1 domain family member 10B ecotropic viral integration site 5 protein homolog TBC1 domain family member 10B TBC1 domain family member 10B-like EVI5-like protein EVI5-like protein uncharacterized LOC102607554 ecotropic viral integration site 5 protein homolog Rab-GTPase-TBC domain-containing protein uncharacterized LOC100260077 uncharacterized LOC7468375 uncharacterized LOC18107430 EVI5-like protein putative plant adhesion protein EVI5-like protein uncharacterized LOC107812048 uncharacterized LOC107761476 uncharacterized LOC4345560 USP6-like protein EVI5-like protein EVI5-like protein ecotropic viral integration site 5 protein homolog EVI5-like protein TBC1 domain family member 10A ecotropic viral integration site 5 protein homolog uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03015 mRNA surveillance pathway 2
ath04382 Cornified envelope formation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03008 Ribosome biogenesis in eukaryotes 2
bra04712 Circadian rhythm - plant 2
bra03083 Polycomb repressive complex 2
bra03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04142 Lysosome 4
bra04144 Endocytosis 4
bra05100 Bacterial invasion of epithelial cells 3
bra03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03015 mRNA surveillance pathway 4
bna04382 Cornified envelope formation 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00600 Sphingolipid metabolism 2
ghi04148 Efferocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00600 Sphingolipid metabolism 2
ghi04148 Efferocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00562 Inositol phosphate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04136 Autophagy - other 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04075 Plant hormone signal transduction 2
sly04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00564 Glycerophospholipid metabolism 2
nta04130 SNARE interactions in vesicular transport 2
nta00562 Inositol phosphate metabolism 2
nta04070 Phosphatidylinositol signaling system 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00564 Glycerophospholipid metabolism 2
nta00562 Inositol phosphate metabolism 2
nta04070 Phosphatidylinositol signaling system 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00240 Pyrimidine metabolism 2
bdi01232 Nucleotide metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 831450 821261 103858958 103851015 106438932 106390406 125582120 107930507 107916727 102607554 100792187 100778662 100260077 7468375 18107430 25495518 101262565 102586750 107812048 107761476 4345560 100272252 123087236 123090723 123447208 8081217 100839878 100846928 5722808
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