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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.9   SYP41   syntaxin of plants 41 
 ath-u.5   SYP41   syntaxin of plants 41 
 ath-r.7   SYP41   syntaxin of plants 41 
 ath-e.2   SYP41   syntaxin of plants 41 
 ath-m.4.bio   SYP41   syntaxin of plants 41 
 ath-m.4.hor   SYP41   syntaxin of plants 41 
 ath-m.4.lig   SYP41   syntaxin of plants 41 
 ath-m.4.str   SYP41   syntaxin of plants 41 
 ath-m.4.tis   SYP41   syntaxin of plants 41 
 ath-u.5   SYP43   syntaxin of plants 43 
 ath-u.5   SYP42   syntaxin of plants 42 
 bra-r.6   103849906   syntaxin-43 
 bra-r.6   103870798   syntaxin-43 
 bra-r.6   103836768   syntaxin-42 
 bna-r.1   111200441   syntaxin-42-like 
 bna-r.1   125593862   syntaxin-43-like 
 bna-r.1   111213578   syntaxin-43-like 
 ghi-r.1   107927165   syntaxin-43 
 ghi-r.1   107922908   syntaxin-41 
 ghi-r.1   107920745   syntaxin-43 
 cit-r.1   102621573   syntaxin-42 
 cit-r.1   102612546   syntaxin-43 
 gma-u.5   100803629   syntaxin-43-like 
 gma-u.5   100797056   syntaxin-43 
 gma-u.5   100796741   syntaxin-43 
 vvi-u.5   100259549   tlg2p-like protein a 
 vvi-u.5   100248594   tlg2p-like protein a 
 ppo-u.5   18098621   syntaxin-43 
 ppo-u.5   7478916   tlg2p-like protein a 
 mtr-u.5   25499622   syntaxin-43 
 mtr-u.5   11407189   syntaxin-43 
 sly-u.5   101263154   syntaxin-43 
 sly-u.5   101265370   syntaxin-43 
 sot-r.1   102593977   syntaxin-43-like 
 sot-r.1   102582914   syntaxin-41-like 
 nta-r.1   107760280   syntaxin-43-like 
 nta-r.1   107768812   syntaxin-43 
 osa-u.5   4339929   syntaxin-43 
 zma-u.5   100192536   Syntaxin 43 
 zma-u.5   100191311   Syntaxin-41 
 tae-r.2   123167797   syntaxin-43 
 tae-r.2   123149703   syntaxin-43 
 tae-r.2   123088277   syntaxin-43 
 hvu-r.1   123411453   syntaxin-43-like 
 sbi-r.1   8081426   syntaxin-43 
 bdi-r.1   100843493   syntaxin-43 
 cre-r.1   CHLRE_12g507450v5   uncharacterized protein 

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Top 50 coexpressed genes to SYP41 (ath-m.9 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to SYP41 (ath-m.9 coexpression data)

CoexMap"832756"


athSYP41 | Entrez gene ID : 832756      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 11 3 3 3 2 3 2 2 2 2 2 2 1 2 3 1 1 1 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ath04130 [list] [network] SNARE interactions in vesicular transport (55 genes)
GO BP
GO:0098629 [list] [network] trans-Golgi network membrane organization  (3 genes)  IMP  
GO:0043001 [list] [network] Golgi to plasma membrane protein transport  (4 genes)  IMP  
GO:0006896 [list] [network] Golgi to vacuole transport  (9 genes)  IMP  
GO:0006906 [list] [network] vesicle fusion  (9 genes)  IDA  
GO:0007030 [list] [network] Golgi organization  (17 genes)  IMP  
GO:0061025 [list] [network] membrane fusion  (36 genes)  TAS  
GO:0009863 [list] [network] salicylic acid mediated signaling pathway  (46 genes)  IMP  
GO:0006886 [list] [network] intracellular protein transport  (149 genes)  IMP TAS  
GO:0009658 [list] [network] chloroplast organization  (197 genes)  IMP  
GO:0050832 [list] [network] defense response to fungus  (282 genes)  IMP  
GO CC
GO:0031201 [list] [network] SNARE complex  (8 genes)  IDA  
GO:0030140 [list] [network] trans-Golgi network transport vesicle  (11 genes)  TAS  
GO:0005802 [list] [network] trans-Golgi network  (279 genes)  IDA TAS  
GO:0005794 [list] [network] Golgi apparatus  (1198 genes)  ISM  
GO MF
GO:0005484 [list] [network] SNAP receptor activity  (30 genes)  TAS  
GO:0005515 [list] [network] protein binding  (5363 genes)  IPI  
Protein NP_001031950.1 [sequence] [blastp]
NP_001331924.1 [sequence] [blastp]
NP_198050.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 4,  golg 2,  mito 1,  golg_plas 1  (predict for NP_001031950.1)
chlo 4,  golg 2,  mito 1,  golg_plas 1  (predict for NP_001331924.1)
chlo 4,  golg 2,  mito 1,  golg_plas 1  (predict for NP_198050.1)
Subcellular
localization
TargetP
mito 9  (predict for NP_001031950.1)
mito 9  (predict for NP_001331924.1)
mito 9  (predict for NP_198050.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.9
for
SYP41
ath-u.5
for
SYP41
ath-r.7
for
SYP41
ath-e.2
for
SYP41
ath-m.4.bio
for
SYP41
ath-m.4.hor
for
SYP41
ath-m.4.lig
for
SYP41
ath-m.4.str
for
SYP41
ath-m.4.tis
for
SYP41
ath-u.5
for
SYP43
ath-u.5
for
SYP42
bra-r.6
for
103849906
bra-r.6
for
103870798
bra-r.6
for
103836768
bna-r.1
for
111200441
bna-r.1
for
125593862
bna-r.1
for
111213578
ghi-r.1
for
107927165
ghi-r.1
for
107922908
ghi-r.1
for
107920745
cit-r.1
for
102621573
cit-r.1
for
102612546
gma-u.5
for
100803629
gma-u.5
for
100797056
gma-u.5
for
100796741
vvi-u.5
for
100259549
vvi-u.5
for
100248594
ppo-u.5
for
18098621
ppo-u.5
for
7478916
mtr-u.5
for
25499622
mtr-u.5
for
11407189
sly-u.5
for
101263154
sly-u.5
for
101265370
sot-r.1
for
102593977
sot-r.1
for
102582914
nta-r.1
for
107760280
nta-r.1
for
107768812
osa-u.5
for
4339929
zma-u.5
for
100192536
zma-u.5
for
100191311
tae-r.2
for
123167797
tae-r.2
for
123149703
tae-r.2
for
123088277
hvu-r.1
for
123411453
sbi-r.1
for
8081426
bdi-r.1
for
100843493
cre-r.1
for
CHLRE_12g507450v5


Ortholog ID: 3792
Species ath ath ath bra bra bra bna bna bna ghi ghi ghi cit cit gma gma gma vvi vvi ppo ppo mtr mtr sly sly sot sot nta nta osa zma zma tae tae tae hvu sbi bdi cre
Symbol SYP41 SYP43 SYP42 LOC103849906 LOC103870798 LOC103836768 LOC125593862 LOC111213578 LOC106365506 LOC107920745 LOC107915884 LOC107887133 LOC102621573 LOC102612546 LOC100803629 LOC100797056 LOC100796741 LOC100259549 LOC100248594 LOC18098621 LOC7478916 LOC25499622 LOC11407189 LOC101263154 LOC101265370 LOC102593977 LOC102582914 LOC107760280 LOC107768812 LOC4339929 LOC100192536 LOC100191311 LOC123167797 LOC123149703 LOC123088277 LOC123411453 LOC8081426 LOC100843493 CHLRE_12g507450v5
Function* syntaxin of plants 41 syntaxin of plants 43 syntaxin of plants 42 syntaxin-43 syntaxin-43 syntaxin-42 syntaxin-43-like syntaxin-43-like syntaxin-42 syntaxin-43 syntaxin-43 syntaxin-43 syntaxin-42 syntaxin-43 syntaxin-43-like syntaxin-43 syntaxin-43 tlg2p-like protein a tlg2p-like protein a syntaxin-43 tlg2p-like protein a syntaxin-43 syntaxin-43 syntaxin-43 syntaxin-43 syntaxin-43-like syntaxin-41-like syntaxin-43-like syntaxin-43 syntaxin-43 Syntaxin 43 Syntaxin-41 syntaxin-43 syntaxin-43 syntaxin-43 syntaxin-43-like syntaxin-43 syntaxin-43 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00564 Glycerophospholipid metabolism 2
ath00565 Ether lipid metabolism 2
ath04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04130 SNARE interactions in vesicular transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04142 Lysosome 2
bra04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04130 SNARE interactions in vesicular transport 6
bna00270 Cysteine and methionine metabolism 2
bna03013 Nucleocytoplasmic transport 2
bna03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04130 SNARE interactions in vesicular transport 6
bna00270 Cysteine and methionine metabolism 2
bna03013 Nucleocytoplasmic transport 2
bna03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03082 ATP-dependent chromatin remodeling 5
bna00230 Purine metabolism 2
bna00730 Thiamine metabolism 2
bna01232 Nucleotide metabolism 2
bna01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04130 SNARE interactions in vesicular transport 4
ghi04148 Efferocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04130 SNARE interactions in vesicular transport 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04141 Protein processing in endoplasmic reticulum 6
ghi04130 SNARE interactions in vesicular transport 4
ghi03083 Polycomb repressive complex 2
ghi04148 Efferocytosis 2
ghi04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03015 mRNA surveillance pathway 2
cit04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04130 SNARE interactions in vesicular transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04130 SNARE interactions in vesicular transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04130 SNARE interactions in vesicular transport 4
gma04145 Phagosome 4
gma04144 Endocytosis 3
gma03060 Protein export 2
gma04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi01250 Biosynthesis of nucleotide sugars 5
vvi00520 Amino sugar and nucleotide sugar metabolism 4
vvi00541 Biosynthesis of various nucleotide sugars 3
vvi00040 Pentose and glucuronate interconversions 2
vvi00053 Ascorbate and aldarate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04136 Autophagy - other 3
vvi04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03015 mRNA surveillance pathway 2
ppo04136 Autophagy - other 2
ppo04382 Cornified envelope formation 2
ppo04130 SNARE interactions in vesicular transport 2
ppo00270 Cysteine and methionine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04144 Endocytosis 2
ppo04142 Lysosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03015 mRNA surveillance pathway 2
mtr00510 N-Glycan biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04141 Protein processing in endoplasmic reticulum 4
mtr03060 Protein export 3
mtr04145 Phagosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04136 Autophagy - other 2
sly04130 SNARE interactions in vesicular transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04130 SNARE interactions in vesicular transport 3
sot00600 Sphingolipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04130 SNARE interactions in vesicular transport 2
sot00071 Fatty acid degradation 2
sot01212 Fatty acid metabolism 2
sot04136 Autophagy - other 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04130 SNARE interactions in vesicular transport 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04130 SNARE interactions in vesicular transport 4
nta04814 Motor proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00520 Amino sugar and nucleotide sugar metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00230 Purine metabolism 3
tae00240 Pyrimidine metabolism 3
tae01232 Nucleotide metabolism 3
tae04130 SNARE interactions in vesicular transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00230 Purine metabolism 3
tae00240 Pyrimidine metabolism 3
tae01232 Nucleotide metabolism 3
tae04130 SNARE interactions in vesicular transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04144 Endocytosis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04130 SNARE interactions in vesicular transport 2
bdi04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre04130 SNARE interactions in vesicular transport 4
cre04144 Endocytosis 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 832756 819740 827505 103849906 103870798 103836768 125593862 111213578 106365506 107920745 107915884 107887133 102621573 102612546 100803629 100797056 100796741 100259549 100248594 18098621 7478916 25499622 11407189 101263154 101265370 102593977 102582914 107760280 107768812 4339929 100192536 100191311 123167797 123149703 123088277 123411453 8081426 100843493 5716501
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