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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.9   RECQSIM   RECQ helicase SIM 
 ath-u.5   RECQSIM   RECQ helicase SIM 
 ath-r.7   RECQSIM   RECQ helicase SIM 
 ath-e.2   RECQSIM   RECQ helicase SIM 
 ath-m.4.bio   RECQSIM   RECQ helicase SIM 
 ath-m.4.hor   RECQSIM   RECQ helicase SIM 
 ath-m.4.lig   RECQSIM   RECQ helicase SIM 
 ath-m.4.str   RECQSIM   RECQ helicase SIM 
 ath-m.4.tis   RECQSIM   RECQ helicase SIM 
 bra-r.6   103874517   ATP-dependent DNA helicase Q-like SIM 
 bna-r.1   106411451   ATP-dependent DNA helicase Q-like SIM 
 bna-r.1   106348681   ATP-dependent DNA helicase Q-like SIM 
 ghi-r.1   107927308   ATP-dependent DNA helicase Q-like SIM 
 ghi-r.1   107887642   ATP-dependent DNA helicase Q-like SIM 
 cit-r.1   102608985   ATP-dependent DNA helicase Q-like SIM 
 gma-u.5   100793222   ATP-dependent DNA helicase Q-like SIM 
 vvi-u.5   100257897   ATP-dependent DNA helicase Q-like SIM 
 ppo-u.5   18098680   ATP-dependent DNA helicase Q-like SIM 
 mtr-u.5   11415668   ATP-dependent DNA helicase Q-like SIM 
 sly-u.5   101250452   ATP-dependent DNA helicase Q-like SIM 
 sot-r.1   102598356   ATP-dependent DNA helicase Q-like SIM 
 nta-r.1   107761280   ATP-dependent DNA helicase Q-like SIM 
 nta-r.1   107814562   ATP-dependent DNA helicase Q-like SIM 
 osa-u.5   4337828   ATP-dependent DNA helicase Q-like SIM 
 zma-u.5   100382628   uncharacterized LOC100382628 
 tae-r.2   123112731   ATP-dependent DNA helicase Q-like SIM 
 tae-r.2   123180518   ATP-dependent DNA helicase Q-like SIM 
 tae-r.2   123191338   ATP-dependent DNA helicase Q-like SIM 
 hvu-r.1   123425471   ATP-dependent DNA helicase Q-like SIM 
 sbi-r.1   8069503   ATP-dependent DNA helicase Q-like SIM 
 bdi-r.1   100821709   ATP-dependent DNA helicase Q-like SIM 

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Top 50 coexpressed genes to RECQSIM (ath-m.9 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to RECQSIM (ath-m.9 coexpression data)

CoexMap"832830"


athRECQSIM | Entrez gene ID : 832830      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 9 1 2 2 1 1 1 1 1 1 1 2 1 1 3 1 1 1 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0006281 [list] [network] DNA repair  (203 genes)  IDA  
GO CC
GO:0005634 [list] [network] nucleus  (10367 genes)  ISM  
GO MF
GO:0043138 [list] [network] 3'-5' DNA helicase activity  (4 genes)  IDA  
Protein NP_001330792.1 [sequence] [blastp]
NP_001330793.1 [sequence] [blastp]
NP_001330794.1 [sequence] [blastp]
NP_001330795.1 [sequence] [blastp]
NP_001330796.1 [sequence] [blastp]
NP_568499.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 4,  nucl 3,  cysk_nucl 2,  cyto 1,  mito 1,  extr 1,  vacu 1  (predict for NP_001330792.1)
nucl 4,  chlo 3,  cysk_nucl 2,  vacu 1,  mito 1,  plas 1,  E.R._vacu 1,  mito_plas 1  (predict for NP_001330793.1)
chlo 4,  nucl 3,  cysk_nucl 2,  cyto 1,  mito 1,  extr 1,  vacu 1  (predict for NP_001330794.1)
chlo 4,  nucl 3,  cysk_nucl 2,  cyto 1,  mito 1,  extr 1,  vacu 1  (predict for NP_001330795.1)
chlo 4,  nucl 3,  cysk_nucl 2,  cyto 1,  mito 1,  extr 1,  vacu 1  (predict for NP_001330796.1)
chlo 4,  nucl 3,  cysk_nucl 2,  cyto 1,  mito 1,  extr 1,  vacu 1  (predict for NP_568499.1)
Subcellular
localization
TargetP
other 8  (predict for NP_001330792.1)
chlo 8  (predict for NP_001330793.1)
other 8  (predict for NP_001330794.1)
other 8  (predict for NP_001330795.1)
other 8  (predict for NP_001330796.1)
other 8  (predict for NP_568499.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.9
for
RECQSIM
ath-u.5
for
RECQSIM
ath-r.7
for
RECQSIM
ath-e.2
for
RECQSIM
ath-m.4.bio
for
RECQSIM
ath-m.4.hor
for
RECQSIM
ath-m.4.lig
for
RECQSIM
ath-m.4.str
for
RECQSIM
ath-m.4.tis
for
RECQSIM
bra-r.6
for
103874517
bna-r.1
for
106411451
bna-r.1
for
106348681
ghi-r.1
for
107927308
ghi-r.1
for
107887642
cit-r.1
for
102608985
gma-u.5
for
100793222
vvi-u.5
for
100257897
ppo-u.5
for
18098680
mtr-u.5
for
11415668
sly-u.5
for
101250452
sot-r.1
for
102598356
nta-r.1
for
107761280
nta-r.1
for
107814562
osa-u.5
for
4337828
zma-u.5
for
100382628
tae-r.2
for
123112731
tae-r.2
for
123180518
tae-r.2
for
123191338
hvu-r.1
for
123425471
sbi-r.1
for
8069503
bdi-r.1
for
100821709


Ortholog ID: 10331
Species ath bra bna ghi ghi cit gma vvi ppo mtr sly sot nta nta osa zma tae tae tae hvu sbi bdi
Symbol RECQSIM LOC103874517 LOC106348681 LOC107927308 LOC107887642 LOC102608985 LOC100793222 LOC100257897 LOC18098680 LOC11415668 LOC101250452 LOC102598356 LOC107761280 LOC107814562 LOC4337828 LOC100382628 LOC123112731 LOC123180518 LOC123191338 LOC123425471 LOC8069503 LOC100821709
Function* RECQ helicase SIM ATP-dependent DNA helicase Q-like SIM ATP-dependent DNA helicase Q-like SIM ATP-dependent DNA helicase Q-like SIM ATP-dependent DNA helicase Q-like SIM ATP-dependent DNA helicase Q-like SIM ATP-dependent DNA helicase Q-like SIM ATP-dependent DNA helicase Q-like SIM ATP-dependent DNA helicase Q-like SIM ATP-dependent DNA helicase Q-like SIM ATP-dependent DNA helicase Q-like SIM ATP-dependent DNA helicase Q-like SIM ATP-dependent DNA helicase Q-like SIM ATP-dependent DNA helicase Q-like SIM ATP-dependent DNA helicase Q-like SIM uncharacterized LOC100382628 ATP-dependent DNA helicase Q-like SIM ATP-dependent DNA helicase Q-like SIM ATP-dependent DNA helicase Q-like SIM ATP-dependent DNA helicase Q-like SIM ATP-dependent DNA helicase Q-like SIM ATP-dependent DNA helicase Q-like SIM
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03440 Homologous recombination 3
ath03430 Mismatch repair 3
ath03460 Fanconi anemia pathway 2
ath04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03460 Fanconi anemia pathway 3
bra03440 Homologous recombination 2
bra03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00908 Zeatin biosynthesis 2
bna00230 Purine metabolism 2
bna00250 Alanine, aspartate and glutamate metabolism 2
bna01232 Nucleotide metabolism 2
bna01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04814 Motor proteins 2
ghi03018 RNA degradation 2
ghi03030 DNA replication 2
ghi03410 Base excision repair 2
ghi03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04075 Plant hormone signal transduction 9
ghi04626 Plant-pathogen interaction 6
ghi03013 Nucleocytoplasmic transport 4
ghi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03030 DNA replication 2
gma03440 Homologous recombination 2
gma00270 Cysteine and methionine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04814 Motor proteins 4
mtr00905 Brassinosteroid biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03440 Homologous recombination 2
sly03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03440 Homologous recombination 2
nta03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03440 Homologous recombination 2
nta03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03030 DNA replication 3
tae03410 Base excision repair 3
tae03420 Nucleotide excision repair 3
tae03430 Mismatch repair 3
tae03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03030 DNA replication 3
tae03410 Base excision repair 3
tae03420 Nucleotide excision repair 3
tae03430 Mismatch repair 3
tae03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03082 ATP-dependent chromatin remodeling 3
hvu03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04141 Protein processing in endoplasmic reticulum 7
sbi04145 Phagosome 3
sbi00970 Aminoacyl-tRNA biosynthesis 3
sbi04148 Efferocytosis 2
sbi04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00970 Aminoacyl-tRNA biosynthesis 3
bdi01230 Biosynthesis of amino acids 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 832830 103874517 106348681 107927308 107887642 102608985 100793222 100257897 18098680 11415668 101250452 102598356 107761280 107814562 4337828 100382628 123112731 123180518 123191338 123425471 8069503 100821709
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