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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.9   AT5G38720   ribosomal RNA-processing 7 protein 
 ath-u.5   AT5G38720   ribosomal RNA-processing 7 protein 
 ath-r.7   AT5G38720   ribosomal RNA-processing 7 protein 
 ath-e.2   AT5G38720   ribosomal RNA-processing 7 protein 
 ath-m.4.bio   AT5G38720   ribosomal RNA-processing 7 protein 
 ath-m.4.hor   AT5G38720   ribosomal RNA-processing 7 protein 
 ath-m.4.lig   AT5G38720   ribosomal RNA-processing 7 protein 
 ath-m.4.str   AT5G38720   ribosomal RNA-processing 7 protein 
 ath-m.4.tis   AT5G38720   ribosomal RNA-processing 7 protein 
 bra-r.6   103863799   calponin homology domain-containing protein DDB_G0272472 
 bna-r.1   106407483   calponin homology domain-containing protein DDB_G0272472-like 
 bna-r.1   106445936   calponin homology domain-containing protein DDB_G0272472 
 ghi-r.1   107895090   ribosomal RNA-processing protein 7 homolog A 
 ghi-r.1   107920256   ribosomal RNA-processing protein 7 homolog A 
 cit-r.1   102608731   uncharacterized LOC102608731 
 gma-u.5   100802650   ribosomal RNA-processing protein 7 homolog A 
 gma-u.5   100776399   ribosomal RNA-processing protein 7 homolog A 
 vvi-u.5   100265155   uncharacterized LOC100265155 
 ppo-u.5   18107432   uncharacterized LOC18107432 
 ppo-u.5   7468378   uncharacterized LOC7468378 
 mtr-u.5   11426579   DNA ligase 1 
 mtr-u.5   11411264   ribosomal RNA-processing protein 7 
 mtr-u.5   11422352   ribosomal RNA-processing protein 7 homolog A 
 sly-u.5   101268734   uncharacterized LOC101268734 
 sly-u.5   101259128   uncharacterized LOC101259128 
 sot-r.1   102589922   uncharacterized protein PF11_0207-like 
 sot-r.1   102585700   uncharacterized protein DDB_G0283697-like 
 nta-r.1   107765719   uncharacterized LOC107765719 
 nta-r.1   107790215   uncharacterized LOC107790215 
 osa-u.5   4330604   uncharacterized LOC4330604 
 zma-u.5   100193550   rRNA processing 7-like 
 tae-r.2   123138117   uncharacterized LOC123138117 
 tae-r.2   123128269   uncharacterized LOC123128269 
 tae-r.2   123145365   uncharacterized LOC123145365 
 hvu-r.1   123403424   uncharacterized LOC123403424 
 sbi-r.1   8071739   ribosomal RNA-processing protein 7 
 bdi-r.1   100824086   DNA ligase 1 
 cre-r.1   CHLRE_01g052200v5   uncharacterized protein 

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Top 50 coexpressed genes to AT5G38720 (ath-m.9 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to AT5G38720 (ath-m.9 coexpression data)

CoexMap"833863"


athAT5G38720 | Entrez gene ID : 833863      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 9 1 2 2 1 2 1 2 3 2 2 2 1 1 3 1 1 1 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ath03008 [list] [network] Ribosome biogenesis in eukaryotes (98 genes)
GO BP
GO:0000028 [list] [network] ribosomal small subunit assembly  (2 genes)  IMP  
GO:0006364 [list] [network] rRNA processing  (183 genes)  IMP  
GO CC
GO:0005730 [list] [network] nucleolus  (394 genes)  IDA  
GO:0005737 [list] [network] cytoplasm  (14000 genes)  ISM  
GO MF
Protein NP_001332268.1 [sequence] [blastp]
NP_001332269.1 [sequence] [blastp]
NP_198688.2 [sequence] [blastp]
Subcellular
localization
wolf
nucl 7,  plas 1,  E.R._plas 1  (predict for NP_001332268.1)
nucl 8,  plas 1  (predict for NP_001332269.1)
nucl 9  (predict for NP_198688.2)
Subcellular
localization
TargetP
scret 9  (predict for NP_001332268.1)
other 8  (predict for NP_001332269.1)
other 8  (predict for NP_198688.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.9
for
AT5G38720
ath-u.5
for
AT5G38720
ath-r.7
for
AT5G38720
ath-e.2
for
AT5G38720
ath-m.4.bio
for
AT5G38720
ath-m.4.hor
for
AT5G38720
ath-m.4.lig
for
AT5G38720
ath-m.4.str
for
AT5G38720
ath-m.4.tis
for
AT5G38720
bra-r.6
for
103863799
bna-r.1
for
106407483
bna-r.1
for
106445936
ghi-r.1
for
107895090
ghi-r.1
for
107920256
cit-r.1
for
102608731
gma-u.5
for
100802650
gma-u.5
for
100776399
vvi-u.5
for
100265155
ppo-u.5
for
18107432
ppo-u.5
for
7468378
mtr-u.5
for
11426579
mtr-u.5
for
11411264
mtr-u.5
for
11422352
sly-u.5
for
101268734
sly-u.5
for
101259128
sot-r.1
for
102589922
sot-r.1
for
102585700
nta-r.1
for
107765719
nta-r.1
for
107790215
osa-u.5
for
4330604
zma-u.5
for
100193550
tae-r.2
for
123138117
tae-r.2
for
123128269
tae-r.2
for
123145365
hvu-r.1
for
123403424
sbi-r.1
for
8071739
bdi-r.1
for
100824086
cre-r.1
for
CHLRE_01g052200v5


Ortholog ID: 6985
Species ath bra bna bna ghi ghi cit gma gma vvi ppo ppo mtr mtr mtr sly sly sot sot nta nta osa zma tae tae tae hvu sbi bdi cre
Symbol AT5G38720 LOC103863799 LOC106407483 LOC106445936 LOC107895090 LOC107920256 LOC102608731 LOC100802650 LOC100776399 LOC100265155 LOC18107432 LOC7468378 LOC11426579 LOC11411264 LOC11422352 LOC101268734 LOC101259128 LOC102589922 LOC102585700 LOC107765719 LOC107790215 LOC4330604 LOC100193550 LOC123138117 LOC123128269 LOC123145365 LOC123403424 LOC8071739 LOC100824086 CHLRE_01g052200v5
Function* ribosomal RNA-processing 7 protein calponin homology domain-containing protein DDB_G0272472 calponin homology domain-containing protein DDB_G0272472-like calponin homology domain-containing protein DDB_G0272472 ribosomal RNA-processing protein 7 homolog A ribosomal RNA-processing protein 7 homolog A uncharacterized LOC102608731 ribosomal RNA-processing protein 7 homolog A ribosomal RNA-processing protein 7 homolog A uncharacterized LOC100265155 uncharacterized LOC18107432 uncharacterized LOC7468378 DNA ligase 1 ribosomal RNA-processing protein 7 ribosomal RNA-processing protein 7 homolog A uncharacterized LOC101268734 uncharacterized LOC101259128 uncharacterized protein PF11_0207-like uncharacterized protein DDB_G0283697-like uncharacterized LOC107765719 uncharacterized LOC107790215 uncharacterized LOC4330604 rRNA processing 7-like uncharacterized LOC123138117 uncharacterized LOC123128269 uncharacterized LOC123145365 uncharacterized LOC123403424 ribosomal RNA-processing protein 7 DNA ligase 1 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03008 Ribosome biogenesis in eukaryotes 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03008 Ribosome biogenesis in eukaryotes 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 10
ghi04120 Ubiquitin mediated proteolysis 6
ghi03008 Ribosome biogenesis in eukaryotes 2
ghi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 14
ghi04120 Ubiquitin mediated proteolysis 6
ghi03008 Ribosome biogenesis in eukaryotes 2
ghi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03008 Ribosome biogenesis in eukaryotes 4
gma03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03008 Ribosome biogenesis in eukaryotes 2
vvi03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03008 Ribosome biogenesis in eukaryotes 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03008 Ribosome biogenesis in eukaryotes 2
mtr03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 7
mtr03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03008 Ribosome biogenesis in eukaryotes 3
mtr03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03008 Ribosome biogenesis in eukaryotes 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 5
sly03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03008 Ribosome biogenesis in eukaryotes 3
sot03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03008 Ribosome biogenesis in eukaryotes 5
nta03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03008 Ribosome biogenesis in eukaryotes 5
nta03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03008 Ribosome biogenesis in eukaryotes 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 4
tae03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 4
tae03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 7
tae03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03008 Ribosome biogenesis in eukaryotes 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03008 Ribosome biogenesis in eukaryotes 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03008 Ribosome biogenesis in eukaryotes 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 833863 103863799 106407483 106445936 107895090 107920256 102608731 100802650 100776399 100265155 18107432 7468378 11426579 11411264 11422352 101268734 101259128 102589922 102585700 107765719 107790215 4330604 100193550 123138117 123128269 123145365 123403424 8071739 100824086 66052171
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