ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
ath-m.9	AT5G41940	Ypt/Rab-GAP domain of gyp1p superfamily protein
ath-u.5	AT5G41940	Ypt/Rab-GAP domain of gyp1p superfamily protein
ath-r.7	AT5G41940	Ypt/Rab-GAP domain of gyp1p superfamily protein
ath-e.2	AT5G41940	Ypt/Rab-GAP domain of gyp1p superfamily protein
ath-m.4.bio	AT5G41940	Ypt/Rab-GAP domain of gyp1p superfamily protein
ath-m.4.hor	AT5G41940	Ypt/Rab-GAP domain of gyp1p superfamily protein
ath-m.4.lig	AT5G41940	Ypt/Rab-GAP domain of gyp1p superfamily protein
ath-m.4.str	AT5G41940	Ypt/Rab-GAP domain of gyp1p superfamily protein
ath-m.4.tis	AT5G41940	Ypt/Rab-GAP domain of gyp1p superfamily protein
ath-u.5	AT3G49350	Ypt/Rab-GAP domain of gyp1p superfamily protein
ath-u.5	AT5G24390	Ypt/Rab-GAP domain of gyp1p superfamily protein
ath-u.5	AT5G53570	Ypt/Rab-GAP domain of gyp1p superfamily protein
bra-r.6	103874308	GTPase-activating protein GYP7
bra-r.6	103844832	TBC1 domain family member 15
bra-r.6	103850242	small G protein signaling modulator 1
bna-r.1	106418245	rab GTPase-activating protein 22
bna-r.1	111211060	rab GTPase-activating protein 22-like
ghi-r.1	121224350	rab GTPase-activating protein 22
ghi-r.1	107904553	rab GTPase-activating protein 22
ghi-r.1	107923899	rab GTPase-activating protein 22
cit-r.1	102625885	rab GTPase-activating protein 22
cit-r.1	102610581	rab GTPase-activating protein 22
gma-u.5	100789579	rab GTPase-activating protein 22
gma-u.5	100791150	rab GTPase-activating protein 22
gma-u.5	100793557	rab GTPase-activating protein 22
vvi-u.5	100265048	rab GTPase-activating protein 22
vvi-u.5	100243483	rab GTPase-activating protein 22
ppo-u.5	7465340	rab GTPase-activating protein 22
ppo-u.5	7475157	rab GTPase-activating protein 22
ppo-u.5	7496438	rab GTPase-activating protein 22
mtr-u.5	11434631	rab GTPase-activating protein 22
mtr-u.5	11415371	rab GTPase-activating protein 22
sly-u.5	101243683	rab GTPase-activating protein 22
sly-u.5	101263416	rab GTPase-activating protein 22
sot-r.1	102587064	GTPase-activating protein gyp7-like
sot-r.1	102580964	small G protein signaling modulator 2-like
nta-r.1	107823218	rab GTPase-activating protein 22
nta-r.1	107770340	rab GTPase-activating protein 22
nta-r.1	107774687	rab GTPase-activating protein 22
osa-u.5	4349126	rab GTPase-activating protein 22
osa-u.5	4346233	rab GTPase-activating protein 22
osa-u.5	4347651	rab GTPase-activating protein 22
zma-u.5	100193197	Ypt/Rab-GAP domain of gyp1p superfamily protein
zma-u.5	100277201	uncharacterized LOC100277201
zma-u.5	100216563	Ypt/Rab-GAP domain of gyp1p superfamily protein
tae-r.2	123181340	rab GTPase-activating protein 22
tae-r.2	123048845	rab GTPase-activating protein 22
tae-r.2	123104506	rab GTPase-activating protein 22
hvu-r.1	123434698	rab GTPase-activating protein 22-like
hvu-r.1	123400038	rab GTPase-activating protein 22-like
hvu-r.1	123407234	rab GTPase-activating protein 22-like
sbi-r.1	8065689	GTPase-activating protein gyp7
sbi-r.1	8155645	GTPase-activating protein GYP7
sbi-r.1	8062071	GTPase-activating protein gyp7
bdi-r.1	100832061	GTPase-activating protein gyp7
bdi-r.1	100837099	GTPase-activating protein gyp7
bdi-r.1	100845343	uncharacterized LOC100845343
cre-r.1	CHLRE_17g715400v5	uncharacterized protein

Top 50 coexpressed genes to AT5G41940 (ath-m.9 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to AT5G41940 (ath-m.9 coexpression data)

CoexMap"834199"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO CC

GO:0005794 [list] [network] Golgi apparatus

(1198 genes)

ISM

GO MF

Protein

NP_199009.2 [sequence] [blastp]

Subcellular
localization
wolf

chlo 9, cyto 1, E.R. 1, cyto_E.R. 1

(predict for NP_199009.2)

Subcellular
localization
TargetP

scret 3

(predict for NP_199009.2)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target				Condition-specific^*					Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ath-m.9 for AT5G41940	ath-u.5 for AT5G41940	ath-r.7 for AT5G41940	ath-e.2 for AT5G41940	ath-m.4.bio for AT5G41940	ath-m.4.hor for AT5G41940	ath-m.4.lig for AT5G41940	ath-m.4.str for AT5G41940	ath-m.4.tis for AT5G41940	ath-u.5 for AT3G49350	ath-u.5 for AT5G24390	ath-u.5 for AT5G53570	bra-r.6 for 103874308	bra-r.6 for 103844832	bra-r.6 for 103850242	bna-r.1 for 106418245	bna-r.1 for 111211060	ghi-r.1 for 121224350	ghi-r.1 for 107904553	ghi-r.1 for 107923899	cit-r.1 for 102625885	cit-r.1 for 102610581	gma-u.5 for 100789579	gma-u.5 for 100791150	gma-u.5 for 100793557	vvi-u.5 for 100265048	vvi-u.5 for 100243483	ppo-u.5 for 7465340	ppo-u.5 for 7475157	ppo-u.5 for 7496438	mtr-u.5 for 11434631	mtr-u.5 for 11415371	sly-u.5 for 101243683	sly-u.5 for 101263416	sot-r.1 for 102587064	sot-r.1 for 102580964	nta-r.1 for 107823218	nta-r.1 for 107770340	nta-r.1 for 107774687	osa-u.5 for 4349126	osa-u.5 for 4346233	osa-u.5 for 4347651	zma-u.5 for 100193197	zma-u.5 for 100277201	zma-u.5 for 100216563	tae-r.2 for 123181340	tae-r.2 for 123048845	tae-r.2 for 123104506	hvu-r.1 for 123434698	hvu-r.1 for 123400038	hvu-r.1 for 123407234	sbi-r.1 for 8065689	sbi-r.1 for 8155645	sbi-r.1 for 8062071	bdi-r.1 for 100832061	bdi-r.1 for 100837099	bdi-r.1 for 100845343	cre-r.1 for CHLRE_17g715400v5

Ortholog

Ortholog ID: 1464

Species

ath

bra

bna

ghi

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

Function^*

Ypt/Rab-GAP domain of gyp1p superfamily protein

GTPase-activating protein GYP7

small G protein signaling modulator 1

rab GTPase-activating protein 22

rab GTPase-activating protein 22-like

rab GTPase-activating protein 22

GTPase-activating protein gyp7-like

small G protein signaling modulator 2-like

rab GTPase-activating protein 22

Ypt/Rab-GAP domain of gyp1p superfamily protein

GTPase-activating protein gyp7

rab GTPase-activating protein 22

rab GTPase-activating protein 22-like

GTPase-activating protein gyp7

uncharacterized LOC100845343

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath00564	Glycerophospholipid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00190	Oxidative phosphorylation	5
bra04145	Phagosome	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04142	Lysosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00010	Glycolysis / Gluconeogenesis	4
ghi00620	Pyruvate metabolism	4
ghi01200	Carbon metabolism	4
ghi01230	Biosynthesis of amino acids	4
ghi03060	Protein export	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00010	Glycolysis / Gluconeogenesis	4
gma00620	Pyruvate metabolism	4
gma01200	Carbon metabolism	4
gma01240	Biosynthesis of cofactors	3
gma01230	Biosynthesis of amino acids	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03082	ATP-dependent chromatin remodeling	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03013	Nucleocytoplasmic transport	2
gma03250	Viral life cycle - HIV-1	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04141	Protein processing in endoplasmic reticulum	3
vvi00190	Oxidative phosphorylation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04075	Plant hormone signal transduction	5
vvi00513	Various types of N-glycan biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04075	Plant hormone signal transduction	2
ppo04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00130	Ubiquinone and other terpenoid-quinone biosynthesis	2
mtr01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03015	mRNA surveillance pathway	5
sly04144	Endocytosis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03015	mRNA surveillance pathway	2
sot04382	Cornified envelope formation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04075	Plant hormone signal transduction	2
nta03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03040	Spliceosome	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04136	Autophagy - other	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma01240	Biosynthesis of cofactors	3
zma00790	Folate biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04148	Efferocytosis	3
tae03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03050	Proteasome	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu01200	Carbon metabolism	2
hvu00520	Amino sugar and nucleotide sugar metabolism	2
hvu01250	Biosynthesis of nucleotide sugars	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi01230	Biosynthesis of amino acids	6
sbi00010	Glycolysis / Gluconeogenesis	3
sbi01200	Carbon metabolism	3
sbi00400	Phenylalanine, tyrosine and tryptophan biosynthesis	3
sbi03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04120	Ubiquitin mediated proteolysis	2
bdi04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04120	Ubiquitin mediated proteolysis	2
bdi03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03050	Proteasome	2
bdi03060	Protein export	2
bdi04141	Protein processing in endoplasmic reticulum	2

Expression

Expression pattern

Entrez Gene ID^*

834199

824097

835439

103874308

103850242

103864130

106418245

111211060

106376475

107904553

107946564

107904518

102625885

102610581

100789579

100791150

100793557

100265048

100243483

7465340

7475157

7477822

11434631

11415371

101243683

101263416

102587064

102580964

107823218

107774687

107785334

4349126

4346233

4347651

100193197

103626094

103633061

123181340

123152397

123156502

123434698

123400038

123407234

8065689

8062071

8058629

100832061

100837099

100845343

5725991

The preparation time of this page was 0.3 [sec].


Species	ath	bra	bna	ghi	cit	gma	vvi	ppo	mtr	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	12	3	2	3	2	3	2	3	2	2	2	3	3	3	3	3	3	3	1

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to AT5G41940 (ath-m.9 coexpression data)

Top 50 enrichment test to AT5G41940 (ath-m.9 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**