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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.9   AT5G46420   16S rRNA processing protein RimM family 
 ath-u.5   AT5G46420   16S rRNA processing protein RimM family 
 ath-r.7   AT5G46420   16S rRNA processing protein RimM family 
 ath-e.2   AT5G46420   16S rRNA processing protein RimM family 
 ath-m.4.bio   AT5G46420   16S rRNA processing protein RimM family 
 ath-m.4.hor   AT5G46420   16S rRNA processing protein RimM family 
 ath-m.4.lig   AT5G46420   16S rRNA processing protein RimM family 
 ath-m.4.str   AT5G46420   16S rRNA processing protein RimM family 
 ath-m.4.tis   AT5G46420   16S rRNA processing protein RimM family 
 bra-r.6   103827733   uncharacterized LOC103827733 
 bna-r.1   BNAC07G19140D   uncharacterized BNAC07G19140D 
 bna-r.1   BNAA06G35980D   uncharacterized BNAA06G35980D 
 ghi-r.1   107935918   uncharacterized LOC107935918 
 ghi-r.1   107913147   uncharacterized LOC107913147 
 cit-r.1   102610521   uncharacterized LOC102610521 
 gma-u.5   100802788   uncharacterized LOC100802788 
 gma-u.5   100800702   uncharacterized LOC100800702 
 vvi-u.5   100251997   uncharacterized LOC100251997 
 ppo-u.5   18095282   uncharacterized LOC18095282 
 mtr-u.5   11418018   uncharacterized LOC11418018 
 sly-u.5   101255162   uncharacterized LOC101255162 
 sot-r.1   102604214   uncharacterized LOC102604214 
 nta-r.1   107774356   uncharacterized LOC107774356 
 nta-r.1   107825588   uncharacterized LOC107825588 
 osa-u.5   4339632   uncharacterized LOC4339632 
 zma-u.5   100501868   16S rRNA processing protein RimM family 
 zma-u.5   103637156   ribosome maturation factor RimM 
 tae-r.2   123146266   uncharacterized LOC123146266 
 tae-r.2   123068590   uncharacterized LOC123068590 
 tae-r.2   123183148   uncharacterized LOC123183148 
 hvu-r.1   123450581   uncharacterized LOC123450581 
 sbi-r.1   8074605   uncharacterized LOC8074605 
 bdi-r.1   100844980   uncharacterized LOC100844980 
 cre-r.1   CHLRE_03g191950v5   uncharacterized protein 

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Top 50 coexpressed genes to AT5G46420 (ath-m.9 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to AT5G46420 (ath-m.9 coexpression data)

CoexMap"834685"


athAT5G46420 | Entrez gene ID : 834685      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 9 1 2 2 1 2 1 1 1 1 1 2 1 2 3 1 1 1 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO:0005840 [list] [network] ribosome  (328 genes)  IEA  
GO:0009507 [list] [network] chloroplast  (5014 genes)  HDA ISM  
GO MF
GO:0003729 [list] [network] mRNA binding  (1514 genes)  IDA  
Protein NP_568663.2 [sequence] [blastp]
Subcellular
localization
wolf
chlo 7,  nucl 2  (predict for NP_568663.2)
Subcellular
localization
TargetP
chlo 9  (predict for NP_568663.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.9
for
AT5G46420
ath-u.5
for
AT5G46420
ath-r.7
for
AT5G46420
ath-e.2
for
AT5G46420
ath-m.4.bio
for
AT5G46420
ath-m.4.hor
for
AT5G46420
ath-m.4.lig
for
AT5G46420
ath-m.4.str
for
AT5G46420
ath-m.4.tis
for
AT5G46420
bra-r.6
for
103827733
bna-r.1
for
BNAC07G19140D
bna-r.1
for
BNAA06G35980D
ghi-r.1
for
107935918
ghi-r.1
for
107913147
cit-r.1
for
102610521
gma-u.5
for
100802788
gma-u.5
for
100800702
vvi-u.5
for
100251997
ppo-u.5
for
18095282
mtr-u.5
for
11418018
sly-u.5
for
101255162
sot-r.1
for
102604214
nta-r.1
for
107774356
nta-r.1
for
107825588
osa-u.5
for
4339632
zma-u.5
for
100501868
zma-u.5
for
103637156
tae-r.2
for
123146266
tae-r.2
for
123068590
tae-r.2
for
123183148
hvu-r.1
for
123450581
sbi-r.1
for
8074605
bdi-r.1
for
100844980
cre-r.1
for
CHLRE_03g191950v5


Ortholog ID: 9722
Species ath bra bna bna ghi ghi cit gma gma vvi ppo mtr sly sot nta nta osa zma zma tae tae tae hvu sbi bdi cre
Symbol AT5G46420 LOC103827733 BNAC07G19140D BNAA06G35980D LOC107935918 LOC107913147 LOC102610521 LOC100802788 LOC100800702 LOC100251997 LOC18095282 LOC11418018 LOC101255162 LOC102604214 LOC107774356 LOC107825588 LOC4339632 LOC100501868 LOC103637156 LOC123146266 LOC123068590 LOC123183148 LOC123450581 LOC8074605 LOC100844980 CHLRE_03g191950v5
Function* 16S rRNA processing protein RimM family uncharacterized LOC103827733 uncharacterized BNAC07G19140D uncharacterized BNAA06G35980D uncharacterized LOC107935918 uncharacterized LOC107913147 uncharacterized LOC102610521 uncharacterized LOC100802788 uncharacterized LOC100800702 uncharacterized LOC100251997 uncharacterized LOC18095282 uncharacterized LOC11418018 uncharacterized LOC101255162 uncharacterized LOC102604214 uncharacterized LOC107774356 uncharacterized LOC107825588 uncharacterized LOC4339632 16S rRNA processing protein RimM family ribosome maturation factor RimM uncharacterized LOC123146266 uncharacterized LOC123068590 uncharacterized LOC123183148 uncharacterized LOC123450581 uncharacterized LOC8074605 uncharacterized LOC100844980 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00970 Aminoacyl-tRNA biosynthesis 3
bra03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00620 Pyruvate metabolism 2
bna00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03060 Protein export 2
cit00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04141 Protein processing in endoplasmic reticulum 3
gma03040 Spliceosome 2
gma04144 Endocytosis 2
gma03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03060 Protein export 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 2
vvi00860 Porphyrin metabolism 2
vvi01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00970 Aminoacyl-tRNA biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 2
mtr00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03018 RNA degradation 4
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 834685 103827733 106410350 106400664 107935918 107913147 102610521 100802788 100800702 100251997 18095282 11418018 101255162 102604214 107774356 107825588 4339632 100501868 103637156 123146266 123068590 123183148 123450581 8074605 100844980 5718676
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