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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.9   SPCH   basic helix-loop-helix (bHLH) DNA-binding superfamily protein 
 ath-u.5   SPCH   basic helix-loop-helix (bHLH) DNA-binding superfamily protein 
 ath-r.7   SPCH   basic helix-loop-helix (bHLH) DNA-binding superfamily protein 
 ath-e.2   SPCH   basic helix-loop-helix (bHLH) DNA-binding superfamily protein 
 ath-m.4.bio   SPCH   basic helix-loop-helix (bHLH) DNA-binding superfamily protein 
 ath-m.4.hor   SPCH   basic helix-loop-helix (bHLH) DNA-binding superfamily protein 
 ath-m.4.lig   SPCH   basic helix-loop-helix (bHLH) DNA-binding superfamily protein 
 ath-m.4.str   SPCH   basic helix-loop-helix (bHLH) DNA-binding superfamily protein 
 ath-m.4.tis   SPCH   basic helix-loop-helix (bHLH) DNA-binding superfamily protein 
 bra-r.6   103844802   transcription factor SPEECHLESS 
 bra-r.6   103852045   transcription factor SPEECHLESS 
 ghi-r.1   107947261   transcription factor SPEECHLESS 
 ghi-r.1   107942308   transcription factor SPEECHLESS 
 gma-u.5   SPCH2   transcription factor SPEECHLESS-like 
 sly-u.5   101256653   transcription factor SPEECHLESS 
 nta-r.1   107784398   transcription factor SPEECHLESS-like 
 nta-r.1   107765572   transcription factor SPEECHLESS-like 

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Top 50 coexpressed genes to SPCH (ath-m.9 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to SPCH (ath-m.9 coexpression data)

CoexMap"835402"


athSPCH | Entrez gene ID : 835402      
Species ath bra ghi gma sly nta hvu sot bdi vvi osa tae bna ppo zma cre mtr sbi cit
Paralog 9 2 2 1 1 2 0 0 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ath04016 [list] [network] MAPK signaling pathway - plant (146 genes)
GO BP
GO:0090547 [list] [network] response to low humidity  (4 genes)  IEP  
GO:2000038 [list] [network] regulation of stomatal complex development  (21 genes)  IMP  
GO:0047484 [list] [network] regulation of response to osmotic stress  (53 genes)  IMP  
GO:0010374 [list] [network] stomatal complex development  (68 genes)  IMP  
GO:0006970 [list] [network] response to osmotic stress  (578 genes)  IEP  
GO:0006355 [list] [network] regulation of DNA-templated transcription  (1618 genes)  TAS  
GO CC
GO:0005634 [list] [network] nucleus  (10367 genes)  IDA ISM  
GO:0005737 [list] [network] cytoplasm  (14000 genes)  ISM  
GO MF
GO:0001216 [list] [network] DNA-binding transcription activator activity  (45 genes)  IDA  
GO:0046983 [list] [network] protein dimerization activity  (446 genes)  IEA  
GO:0003700 [list] [network] DNA-binding transcription factor activity  (1620 genes)  IEA ISS  
GO:0005515 [list] [network] protein binding  (5363 genes)  IPI  
Protein NP_001331493.1 [sequence] [blastp]
NP_200133.2 [sequence] [blastp]
Subcellular
localization
wolf
nucl 7,  cyto_nucl 4,  cyto 1  (predict for NP_001331493.1)
nucl 6,  cyto_nucl 4,  cyto 1,  chlo 1,  pero 1,  cysk 1  (predict for NP_200133.2)
Subcellular
localization
TargetP
other 7  (predict for NP_001331493.1)
other 7  (predict for NP_200133.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.9
for
SPCH
ath-u.5
for
SPCH
ath-r.7
for
SPCH
ath-e.2
for
SPCH
ath-m.4.bio
for
SPCH
ath-m.4.hor
for
SPCH
ath-m.4.lig
for
SPCH
ath-m.4.str
for
SPCH
ath-m.4.tis
for
SPCH
bra-r.6
for
103844802
bra-r.6
for
103852045
ghi-r.1
for
107947261
ghi-r.1
for
107942308
gma-u.5
for
SPCH2
sly-u.5
for
101256653
nta-r.1
for
107784398
nta-r.1
for
107765572


Ortholog ID: 5184
Species ath bra bra ghi ghi gma gma sly nta nta
Symbol SPCH LOC103844802 LOC103852045 LOC107947261 LOC107942308 SPCH2 SPCH1 LOC101256653 LOC107784398 LOC107765572
Function* basic helix-loop-helix (bHLH) DNA-binding superfamily protein transcription factor SPEECHLESS transcription factor SPEECHLESS transcription factor SPEECHLESS transcription factor SPEECHLESS transcription factor SPEECHLESS-like transcription factor SPEECHLESS transcription factor SPEECHLESS transcription factor SPEECHLESS-like transcription factor SPEECHLESS-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04016 MAPK signaling pathway - plant 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04016 MAPK signaling pathway - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04016 MAPK signaling pathway - plant 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04016 MAPK signaling pathway - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04016 MAPK signaling pathway - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04016 MAPK signaling pathway - plant 3
gma00073 Cutin, suberine and wax biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04016 MAPK signaling pathway - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04016 MAPK signaling pathway - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04016 MAPK signaling pathway - plant 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 835402 103844802 103852045 107947261 107942308 100808130 100777437 101256653 107784398 107765572
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