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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.9   TOP1BETA   DNA topoisomerase 1 beta 
 ath-u.5   TOP1BETA   DNA topoisomerase 1 beta 
 ath-r.7   TOP1BETA   DNA topoisomerase 1 beta 
 ath-e.2   TOP1BETA   DNA topoisomerase 1 beta 
 ath-m.4.bio   TOP1BETA   DNA topoisomerase 1 beta 
 ath-m.4.hor   TOP1BETA   DNA topoisomerase 1 beta 
 ath-m.4.lig   TOP1BETA   DNA topoisomerase 1 beta 
 ath-m.4.str   TOP1BETA   DNA topoisomerase 1 beta 
 ath-m.4.tis   TOP1BETA   DNA topoisomerase 1 beta 
 ath-u.5   TOP1ALPHA   DNA topoisomerase I alpha 
 bra-r.6   103851889   DNA topoisomerase 1 alpha 
 bra-r.6   103844971   DNA topoisomerase 1 beta 
 bna-r.1   106371419   DNA topoisomerase 1 beta-like 
 bna-r.1   106429991   DNA topoisomerase 1 beta 
 ghi-r.1   107932759   DNA topoisomerase 1 alpha 
 ghi-r.1   121223388   DNA topoisomerase 1 beta 
 ghi-r.1   121209369   DNA topoisomerase 1 beta 
 cit-r.1   102630648   DNA topoisomerase 1 beta-like 
 gma-u.5   100799837   DNA topoisomerase 1 beta 
 gma-u.5   100779575   DNA topoisomerase 1 beta 
 vvi-u.5   100246144   DNA topoisomerase 1 alpha 
 vvi-u.5   100244754   DNA topoisomerase 1 alpha 
 ppo-u.5   7470821   DNA topoisomerase 1 beta 
 ppo-u.5   7483644   DNA topoisomerase 1 alpha 
 mtr-u.5   25482881   DNA topoisomerase 1 alpha 
 mtr-u.5   25480542   DNA topoisomerase 1 alpha 
 sly-u.5   101261043   DNA topoisomerase 1 alpha 
 sot-r.1   102586125   DNA topoisomerase 1-like 
 nta-r.1   107801727   DNA topoisomerase 1-like 
 nta-r.1   107830452   DNA topoisomerase 1 alpha 
 osa-u.5   4344685   DNA topoisomerase 1 beta 
 zma-u.5   100191474   topoisomerase I 
 tae-r.2   123147367   DNA topoisomerase 1 beta 
 tae-r.2   123159991   DNA topoisomerase 1 beta 
 hvu-r.1   123410275   DNA topoisomerase 1 beta-like 
 sbi-r.1   8076589   DNA topoisomerase 1 beta 
 bdi-r.1   100844188   DNA topoisomerase 1 beta 
 bdi-r.1   100822289   DNA topoisomerase 1 beta 
 cre-r.1   CHLRE_03g178600v5   uncharacterized protein 

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Top 50 coexpressed genes to TOP1BETA (ath-m.9 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to TOP1BETA (ath-m.9 coexpression data)

CoexMap"835624"


athTOP1BETA | Entrez gene ID : 835624      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 10 2 2 3 1 2 2 2 2 1 1 2 1 1 2 1 1 2 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0006265 [list] [network] DNA topological change  (9 genes)  IC  
GO CC
GO:0005634 [list] [network] nucleus  (10367 genes)  ISM  
GO MF
GO:0003917 [list] [network] DNA topoisomerase type I (single strand cut, ATP-independent) activity  (3 genes)  ISS  
Protein NP_200342.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 10  (predict for NP_200342.1)
Subcellular
localization
TargetP
other 9  (predict for NP_200342.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.9
for
TOP1BETA
ath-u.5
for
TOP1BETA
ath-r.7
for
TOP1BETA
ath-e.2
for
TOP1BETA
ath-m.4.bio
for
TOP1BETA
ath-m.4.hor
for
TOP1BETA
ath-m.4.lig
for
TOP1BETA
ath-m.4.str
for
TOP1BETA
ath-m.4.tis
for
TOP1BETA
ath-u.5
for
TOP1ALPHA
bra-r.6
for
103851889
bra-r.6
for
103844971
bna-r.1
for
106371419
bna-r.1
for
106429991
ghi-r.1
for
107932759
ghi-r.1
for
121223388
ghi-r.1
for
121209369
cit-r.1
for
102630648
gma-u.5
for
100799837
gma-u.5
for
100779575
vvi-u.5
for
100246144
vvi-u.5
for
100244754
ppo-u.5
for
7470821
ppo-u.5
for
7483644
mtr-u.5
for
25482881
mtr-u.5
for
25480542
sly-u.5
for
101261043
sot-r.1
for
102586125
nta-r.1
for
107801727
nta-r.1
for
107830452
osa-u.5
for
4344685
zma-u.5
for
100191474
tae-r.2
for
123147367
tae-r.2
for
123159991
hvu-r.1
for
123410275
sbi-r.1
for
8076589
bdi-r.1
for
100844188
bdi-r.1
for
100822289
cre-r.1
for
CHLRE_03g178600v5


Ortholog ID: 4632
Species ath ath bra bra bna bna ghi ghi ghi cit gma gma vvi vvi ppo ppo mtr mtr sly sot nta nta osa zma tae hvu sbi bdi bdi cre
Symbol TOP1BETA TOP1ALPHA LOC103851889 LOC103844971 LOC106371419 LOC106429991 LOC107932759 LOC121209369 LOC107903422 LOC102630648 LOC100799837 LOC100779575 LOC100246144 LOC100244754 LOC7470821 LOC7483644 LOC25482881 LOC25480542 LOC101261043 LOC102586125 LOC107801727 LOC107830452 LOC4344685 LOC100191474 LOC123167539 LOC123410275 LOC8076589 LOC100844188 LOC100822289 CHLRE_03g178600v5
Function* DNA topoisomerase 1 beta DNA topoisomerase I alpha DNA topoisomerase 1 alpha DNA topoisomerase 1 beta DNA topoisomerase 1 beta-like DNA topoisomerase 1 beta DNA topoisomerase 1 alpha DNA topoisomerase 1 beta DNA topoisomerase 1 alpha DNA topoisomerase 1 beta-like DNA topoisomerase 1 beta DNA topoisomerase 1 beta DNA topoisomerase 1 alpha DNA topoisomerase 1 alpha DNA topoisomerase 1 beta DNA topoisomerase 1 alpha DNA topoisomerase 1 alpha DNA topoisomerase 1 alpha DNA topoisomerase 1 alpha DNA topoisomerase 1-like DNA topoisomerase 1-like DNA topoisomerase 1 alpha DNA topoisomerase 1 beta topoisomerase I DNA topoisomerase 1 beta DNA topoisomerase 1 beta-like DNA topoisomerase 1 beta DNA topoisomerase 1 beta DNA topoisomerase 1 beta uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00511 Other glycan degradation 3
ghi00600 Sphingolipid metabolism 3
ghi04382 Cornified envelope formation 3
ghi03030 DNA replication 2
ghi03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
ghi01240 Biosynthesis of cofactors 2
ghi03030 DNA replication 2
ghi03420 Nucleotide excision repair 2
ghi03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00511 Other glycan degradation 3
ghi00600 Sphingolipid metabolism 3
ghi04382 Cornified envelope formation 3
ghi03030 DNA replication 2
ghi03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03022 Basal transcription factors 3
cit03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04120 Ubiquitin mediated proteolysis 2
gma04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03040 Spliceosome 3
vvi03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03008 Ribosome biogenesis in eukaryotes 3
mtr03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 3
sot03013 Nucleocytoplasmic transport 2
sot03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03018 RNA degradation 3
nta03008 Ribosome biogenesis in eukaryotes 2
nta04712 Circadian rhythm - plant 2
nta03420 Nucleotide excision repair 2
nta04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta01240 Biosynthesis of cofactors 3
nta03018 RNA degradation 3
nta00790 Folate biosynthesis 2
nta04981 Folate transport and metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 4
osa03022 Basal transcription factors 2
osa03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03013 Nucleocytoplasmic transport 2
zma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03013 Nucleocytoplasmic transport 2
bdi03040 Spliceosome 2
bdi00511 Other glycan degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03040 Spliceosome 4
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 835624 835623 103851889 103844971 106371419 106429991 107932759 121209369 107903422 102630648 100799837 100779575 100246144 100244754 7470821 7483644 25482881 25480542 101261043 102586125 107801727 107830452 4344685 100191474 123167539 123410275 8076589 100844188 100822289 5728813
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