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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.9   AT5G55580   Mitochondrial transcription termination factor family protein 
 ath-u.5   AT5G55580   Mitochondrial transcription termination factor family protein 
 ath-r.7   AT5G55580   Mitochondrial transcription termination factor family protein 
 ath-e.2   AT5G55580   Mitochondrial transcription termination factor family protein 
 ath-m.4.bio   AT5G55580   Mitochondrial transcription termination factor family protein 
 ath-m.4.hor   AT5G55580   Mitochondrial transcription termination factor family protein 
 ath-m.4.lig   AT5G55580   Mitochondrial transcription termination factor family protein 
 ath-m.4.str   AT5G55580   Mitochondrial transcription termination factor family protein 
 ath-m.4.tis   AT5G55580   Mitochondrial transcription termination factor family protein 
 bra-r.6   103856978   transcription termination factor MTERF9, chloroplastic 
 bna-r.1   106345981   transcription termination factor MTERF9, chloroplastic 
 bna-r.1   125600739   transcription termination factor MTERF9, chloroplastic 
 ghi-r.1   107958650   transcription termination factor MTERF9, chloroplastic 
 ghi-r.1   107894379   transcription termination factor MTERF9, chloroplastic 
 cit-r.1   102620715   transcription termination factor MTERF9, chloroplastic 
 gma-u.5   102660933   transcription termination factor MTERF9, chloroplastic 
 gma-u.5   100809638   transcription termination factor MTERF9, chloroplastic 
 vvi-u.5   100260706   transcription termination factor MTERF9, chloroplastic 
 ppo-u.5   7485086   transcription termination factor MTERF9, chloroplastic 
 mtr-u.5   11425995   transcription termination factor MTERF9, chloroplastic 
 sly-u.5   101267870   transcription termination factor MTERF9, chloroplastic 
 sot-r.1   102594087   uncharacterized LOC102594087 
 nta-r.1   107829319   transcription termination factor MTERF9, chloroplastic 
 nta-r.1   107784380   transcription termination factor MTERF9, chloroplastic 
 osa-u.5   4343734   transcription termination factor MTERF9, chloroplastic 
 zma-u.5   100285943   uncharacterized LOC100285943 
 tae-r.2   123044419   transcription termination factor MTERF9, chloroplastic 
 tae-r.2   123052281   transcription termination factor MTERF9, chloroplastic 
 tae-r.2   123188126   transcription termination factor MTERF9, chloroplastic 
 hvu-r.1   123425552   transcription termination factor MTERF9, chloroplastic 
 sbi-r.1   8058361   transcription termination factor MTERF9, chloroplastic 
 bdi-r.1   100843823   transcription termination factor MTERF9, chloroplastic 

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Top 50 coexpressed genes to AT5G55580 (ath-m.9 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to AT5G55580 (ath-m.9 coexpression data)

CoexMap"835652"


athAT5G55580 | Entrez gene ID : 835652      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 9 1 2 2 1 2 1 1 1 1 1 2 1 1 3 1 1 1 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:1904821 [list] [network] chloroplast disassembly  (4 genes)  IMP  
GO:0010343 [list] [network] singlet oxygen-mediated programmed cell death  (5 genes)  IMP  
GO:0009658 [list] [network] chloroplast organization  (197 genes)  IMP  
GO:0009651 [list] [network] response to salt stress  (473 genes)  IMP  
GO:0048364 [list] [network] root development  (600 genes)  IMP  
GO:0048367 [list] [network] shoot system development  (800 genes)  IMP  
GO:0006355 [list] [network] regulation of DNA-templated transcription  (1618 genes)  IEA IEP  
GO CC
GO:0005739 [list] [network] mitochondrion  (4244 genes)  ISM  
GO:0009507 [list] [network] chloroplast  (5014 genes)  IDA ISM  
GO MF
GO:0003690 [list] [network] double-stranded DNA binding  (800 genes)  IEA  
Protein NP_001330153.1 [sequence] [blastp]
NP_001330154.1 [sequence] [blastp]
NP_200369.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 6,  chlo 1,  nucl 1,  extr 1,  pero 1,  chlo_mito 1,  cysk_nucl 1,  nucl_plas 1  (predict for NP_001330153.1)
nucl 7,  cyto 3  (predict for NP_001330154.1)
cyto 8,  chlo 1,  nucl 1,  pero 1  (predict for NP_200369.1)
Subcellular
localization
TargetP
chlo 3  (predict for NP_001330153.1)
other 8  (predict for NP_001330154.1)
chlo 3  (predict for NP_200369.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.9
for
AT5G55580
ath-u.5
for
AT5G55580
ath-r.7
for
AT5G55580
ath-e.2
for
AT5G55580
ath-m.4.bio
for
AT5G55580
ath-m.4.hor
for
AT5G55580
ath-m.4.lig
for
AT5G55580
ath-m.4.str
for
AT5G55580
ath-m.4.tis
for
AT5G55580
bra-r.6
for
103856978
bna-r.1
for
106345981
bna-r.1
for
125600739
ghi-r.1
for
107958650
ghi-r.1
for
107894379
cit-r.1
for
102620715
gma-u.5
for
102660933
gma-u.5
for
100809638
vvi-u.5
for
100260706
ppo-u.5
for
7485086
mtr-u.5
for
11425995
sly-u.5
for
101267870
sot-r.1
for
102594087
nta-r.1
for
107829319
nta-r.1
for
107784380
osa-u.5
for
4343734
zma-u.5
for
100285943
tae-r.2
for
123044419
tae-r.2
for
123052281
tae-r.2
for
123188126
hvu-r.1
for
123425552
sbi-r.1
for
8058361
bdi-r.1
for
100843823


Ortholog ID: 11000
Species ath bra bna bna ghi ghi cit gma gma vvi ppo mtr sly sot nta nta osa zma tae tae tae hvu sbi bdi
Symbol AT5G55580 LOC103856978 LOC106345981 LOC125600739 LOC107958650 LOC107894379 LOC102620715 LOC102660933 LOC100809638 LOC100260706 LOC7485086 LOC11425995 LOC101267870 LOC102594087 LOC107829319 LOC107784380 LOC4343734 LOC100285943 LOC123044419 LOC123052281 LOC123188126 LOC123425552 LOC8058361 LOC100843823
Function* Mitochondrial transcription termination factor family protein transcription termination factor MTERF9, chloroplastic transcription termination factor MTERF9, chloroplastic transcription termination factor MTERF9, chloroplastic transcription termination factor MTERF9, chloroplastic transcription termination factor MTERF9, chloroplastic transcription termination factor MTERF9, chloroplastic transcription termination factor MTERF9, chloroplastic transcription termination factor MTERF9, chloroplastic transcription termination factor MTERF9, chloroplastic transcription termination factor MTERF9, chloroplastic transcription termination factor MTERF9, chloroplastic transcription termination factor MTERF9, chloroplastic uncharacterized LOC102594087 transcription termination factor MTERF9, chloroplastic transcription termination factor MTERF9, chloroplastic transcription termination factor MTERF9, chloroplastic uncharacterized LOC100285943 transcription termination factor MTERF9, chloroplastic transcription termination factor MTERF9, chloroplastic transcription termination factor MTERF9, chloroplastic transcription termination factor MTERF9, chloroplastic transcription termination factor MTERF9, chloroplastic transcription termination factor MTERF9, chloroplastic
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03018 RNA degradation 2
ghi03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03008 Ribosome biogenesis in eukaryotes 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04626 Plant-pathogen interaction 3
gma00220 Arginine biosynthesis 2
gma00330 Arginine and proline metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00500 Starch and sucrose metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 835652 103856978 106345981 125600739 107958650 107894379 102620715 102660933 100809638 100260706 7485086 11425995 101267870 102594087 107829319 107784380 4343734 100285943 123044419 123052281 123188126 123425552 8058361 100843823
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