ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
ath-m.9	BAM1	Leucine-rich receptor-like protein kinase family protein
ath-u.5	BAM1	Leucine-rich receptor-like protein kinase family protein
ath-r.7	BAM1	Leucine-rich receptor-like protein kinase family protein
ath-e.2	BAM1	Leucine-rich receptor-like protein kinase family protein
ath-m.4.bio	BAM1	Leucine-rich receptor-like protein kinase family protein
ath-m.4.hor	BAM1	Leucine-rich receptor-like protein kinase family protein
ath-m.4.lig	BAM1	Leucine-rich receptor-like protein kinase family protein
ath-m.4.str	BAM1	Leucine-rich receptor-like protein kinase family protein
ath-m.4.tis	BAM1	Leucine-rich receptor-like protein kinase family protein
ath-u.5	BAM2	Leucine-rich receptor-like protein kinase family protein
ath-u.5	BAM3	Leucine-rich receptor-like protein kinase family protein
ath-u.5	CLV1	Leucine-rich receptor-like protein kinase family protein
bra-r.6	103858059	leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3
bra-r.6	103860625	leucine-rich repeat receptor-like serine/threonine-protein kinase BAM2
bna-r.1	111215042	leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3
bna-r.1	106421176	leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3
bna-r.1	125596580	leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3
ghi-r.1	107945188	leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3
ghi-r.1	107922516	leucine-rich repeat receptor-like serine/threonine-protein kinase BAM2
ghi-r.1	107898926	leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1
cit-r.1	102608073	leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1
cit-r.1	102610563	receptor protein kinase CLAVATA1
cit-r.1	102612034	leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1
gma-u.5	100803075	CLE-related protein RLK3
gma-u.5	100815103	leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3
gma-u.5	100816158	leucine-rich repeat receptor-like kinase
vvi-u.5	100855393	leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1
vvi-u.5	100258232	leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3
vvi-u.5	100260741	receptor protein kinase CLAVATA1
ppo-u.5	7491457	leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3
ppo-u.5	7493980	receptor protein kinase CLAVATA1
mtr-u.5	11424811	leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1
mtr-u.5	11408427	leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1
mtr-u.5	25490539	leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3
sly-u.5	101248733	leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1-like
sly-u.5	101267452	leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3
sly-u.5	CLV1	receptor protein kinase CLAVATA1
sot-r.1	102585300	leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3
sot-r.1	102580156	leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1
sot-r.1	102583999	leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1
nta-r.1	107765200	uncharacterized LOC107765200
nta-r.1	107765397	leucine-rich repeat receptor-like kinase protein HAR1
nta-r.1	107771837	uncharacterized LOC107771837
osa-u.5	4334273	leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1
osa-u.5	9268663	leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1
osa-u.5	9266544	leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3
zma-u.5	103644083	leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1
zma-u.5	100279272	uncharacterized LOC100279272
zma-u.5	100272700	putative leucine-rich repeat receptor-like protein kinase family protein
tae-r.2	123044977	leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1
tae-r.2	123165411	leucine-rich repeat receptor-like kinase protein FLORAL ORGAN NUMBER1
tae-r.2	123096229	leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1
hvu-r.1	123452447	leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1
hvu-r.1	123449238	leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1
hvu-r.1	123447854	leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1
sbi-r.1	8084179	leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1
sbi-r.1	110431654	leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1
sbi-r.1	8071559	leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1
bdi-r.1	104581833	leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1
bdi-r.1	100823805	leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1
bdi-r.1	100827326	leucine-rich repeat receptor-like kinase protein FLORAL ORGAN NUMBER1

Top 50 coexpressed genes to BAM1 (ath-m.9 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to BAM1 (ath-m.9 coexpression data)

CoexMap"836699"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO:0010480 [list] [network] microsporocyte differentiation	(2 genes)	IGI
GO:0009934 [list] [network] regulation of meristem structural organization	(22 genes)	IGI
GO:0010075 [list] [network] regulation of meristem growth	(75 genes)	IGI
GO:0048653 [list] [network] anther development	(81 genes)	IGI
GO:0048437 [list] [network] floral organ development	(274 genes)	IGI
GO:0048229 [list] [network] gametophyte development	(505 genes)	IGI

GO CC

GO:0005886 [list] [network] plasma membrane

(2598 genes)

HDA ISM

GO MF

GO:0033612 [list] [network] receptor serine/threonine kinase binding	(72 genes)	IPI
GO:0042802 [list] [network] identical protein binding	(414 genes)	IPI
GO:0016301 [list] [network] kinase activity	(1055 genes)	ISS
GO:0005515 [list] [network] protein binding	(5363 genes)	IPI

Protein

NP_001190624.1 [sequence] [blastp]
NP_201371.1 [sequence] [blastp]

Subcellular
localization
wolf

plas 7, E.R. 1, chlo 1, pero 1, E.R._vacu 1, cyto_E.R. 1	(predict for NP_001190624.1)
plas 7, E.R. 1, chlo 1, pero 1, E.R._vacu 1, cyto_E.R. 1	(predict for NP_201371.1)

Subcellular
localization
TargetP

scret 2	(predict for NP_001190624.1)
scret 2	(predict for NP_201371.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target				Condition-specific^*					Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ath-m.9 for BAM1	ath-u.5 for BAM1	ath-r.7 for BAM1	ath-e.2 for BAM1	ath-m.4.bio for BAM1	ath-m.4.hor for BAM1	ath-m.4.lig for BAM1	ath-m.4.str for BAM1	ath-m.4.tis for BAM1	ath-u.5 for BAM2	ath-u.5 for BAM3	ath-u.5 for CLV1	bra-r.6 for 103858059	bra-r.6 for 103860625	bna-r.1 for 111215042	bna-r.1 for 106421176	bna-r.1 for 125596580	ghi-r.1 for 107945188	ghi-r.1 for 107922516	ghi-r.1 for 107898926	cit-r.1 for 102608073	cit-r.1 for 102610563	cit-r.1 for 102612034	gma-u.5 for 100803075	gma-u.5 for 100815103	gma-u.5 for 100816158	vvi-u.5 for 100855393	vvi-u.5 for 100258232	vvi-u.5 for 100260741	ppo-u.5 for 7491457	ppo-u.5 for 7493980	mtr-u.5 for 11424811	mtr-u.5 for 11408427	mtr-u.5 for 25490539	sly-u.5 for 101248733	sly-u.5 for 101267452	sly-u.5 for CLV1	sot-r.1 for 102585300	sot-r.1 for 102580156	sot-r.1 for 102583999	nta-r.1 for 107765200	nta-r.1 for 107765397	nta-r.1 for 107771837	osa-u.5 for 4334273	osa-u.5 for 9268663	osa-u.5 for 9266544	zma-u.5 for 103644083	zma-u.5 for 100279272	zma-u.5 for 100272700	tae-r.2 for 123044977	tae-r.2 for 123165411	tae-r.2 for 123096229	hvu-r.1 for 123452447	hvu-r.1 for 123449238	hvu-r.1 for 123447854	sbi-r.1 for 8084179	sbi-r.1 for 110431654	sbi-r.1 for 8071559	bdi-r.1 for 104581833	bdi-r.1 for 100823805	bdi-r.1 for 100827326

Ortholog

Ortholog ID: 450

Species

ath

bra

bna

ghi

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

Symbol

BAM1

BAM2

BAM3

RLK3

RLK1

Function^*

Leucine-rich receptor-like protein kinase family protein

leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3

leucine-rich repeat receptor-like serine/threonine-protein kinase BAM2

leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3