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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.9   AT1G06960   RNA-binding (RRM/RBD/RNP motifs) family protein 
 ath-u.5   AT1G06960   RNA-binding (RRM/RBD/RNP motifs) family protein 
 ath-r.7   AT1G06960   RNA-binding (RRM/RBD/RNP motifs) family protein 
 ath-e.2   AT1G06960   RNA-binding (RRM/RBD/RNP motifs) family protein 
 ath-m.4.bio   AT1G06960   RNA-binding (RRM/RBD/RNP motifs) family protein 
 ath-m.4.hor   AT1G06960   RNA-binding (RRM/RBD/RNP motifs) family protein 
 ath-m.4.lig   AT1G06960   RNA-binding (RRM/RBD/RNP motifs) family protein 
 ath-m.4.str   AT1G06960   RNA-binding (RRM/RBD/RNP motifs) family protein 
 ath-m.4.tis   AT1G06960   RNA-binding (RRM/RBD/RNP motifs) family protein 
 ath-u.5   U2B''   U2 small nuclear ribonucleoprotein B 
 bra-r.6   103867968   U2 small nuclear ribonucleoprotein B'' 
 bna-r.1   106452320   U2 small nuclear ribonucleoprotein B'' 
 bna-r.1   106424909   U2 small nuclear ribonucleoprotein B'' 
 bna-r.1   125603918   U2 small nuclear ribonucleoprotein B''-like 
 ghi-r.1   107935079   U2 small nuclear ribonucleoprotein B'' 2 
 ghi-r.1   107927120   U2 small nuclear ribonucleoprotein B'' 2 
 cit-r.1   102621915   U2 small nuclear ribonucleoprotein B'' 2 
 gma-u.5   100805822   U2 small nuclear ribonucleoprotein B''-like 
 gma-u.5   100499914   uncharacterized LOC100499914 
 vvi-u.5   100248478   U2 small nuclear ribonucleoprotein B'' 2 
 ppo-u.5   18104685   U2 small nuclear ribonucleoprotein B'' 2 
 ppo-u.5   112325212   U2 small nuclear ribonucleoprotein B'' 2 
 mtr-u.5   25483670   U2 small nuclear ribonucleoprotein B'' 2 
 mtr-u.5   11416715   U2 small nuclear ribonucleoprotein B'' 2 
 sly-u.5   101249376   U2 small nuclear ribonucleoprotein B'' 
 sot-r.1   102600261   U2 small nuclear ribonucleoprotein B''-like 
 nta-r.1   107829271   U2 small nuclear ribonucleoprotein B''-like 
 nta-r.1   107774892   U2 small nuclear ribonucleoprotein B'' 
 osa-u.5   4332557   U2 small nuclear ribonucleoprotein B''-like 
 zma-u.5   100383254   U2 small nuclear ribonucleoprotein B'' 
 zma-u.5   100283511   spliceosomal protein 
 tae-r.2   123097730   U2 small nuclear ribonucleoprotein B'' 
 tae-r.2   123092404   U2 small nuclear ribonucleoprotein B'' 
 tae-r.2   123085623   U2 small nuclear ribonucleoprotein B'' 
 hvu-r.1   123448868   U2 small nuclear ribonucleoprotein B''-like 
 sbi-r.1   8081113   U2 small nuclear ribonucleoprotein B'' 
 bdi-r.1   100845326   U2 small nuclear ribonucleoprotein B'' 
 cre-r.1   CHLRE_13g566700v5   uncharacterized protein 

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Top 50 coexpressed genes to AT1G06960 (ath-m.9 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to AT1G06960 (ath-m.9 coexpression data)

CoexMap"837206"


athAT1G06960 | Entrez gene ID : 837206      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 10 1 3 2 1 2 1 2 2 1 1 2 1 2 3 1 1 1 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ath03040 [list] [network] Spliceosome (243 genes)
GO BP
GO:0009631 [list] [network] cold acclimation  (60 genes)  IMP  
GO CC
GO:0005686 [list] [network] U2 snRNP  (8 genes)  IDA  
GO:0015030 [list] [network] Cajal body  (12 genes)  IDA  
GO:0005654 [list] [network] nucleoplasm  (262 genes)  ISS  
GO:0005730 [list] [network] nucleolus  (394 genes)  ISS  
GO:0005634 [list] [network] nucleus  (10367 genes)  ISM  
GO MF
Protein NP_001077472.1 [sequence] [blastp]
NP_001318937.1 [sequence] [blastp]
NP_001321351.1 [sequence] [blastp]
NP_001321352.1 [sequence] [blastp]
NP_001321353.1 [sequence] [blastp]
NP_850936.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 9,  mito 1  (predict for NP_001077472.1)
nucl 5,  cyto 3,  extr 1,  cyto_pero 1,  cyto_E.R. 1,  cyto_plas 1  (predict for NP_001318937.1)
nucl 6,  cyto 1,  chlo 1,  plas 1,  extr 1,  cysk 1,  cyto_pero 1,  cysk_plas 1,  cyto_E.R. 1  (predict for NP_001321351.1)
nucl 4,  cyto 4,  cyto_nucl 4  (predict for NP_001321352.1)
chlo 9,  mito 1  (predict for NP_001321353.1)
nucl 6,  cyto 3  (predict for NP_850936.1)
Subcellular
localization
TargetP
mito 8  (predict for NP_001077472.1)
other 9  (predict for NP_001318937.1)
other 9  (predict for NP_001321351.1)
other 6,  mito 4  (predict for NP_001321352.1)
mito 8  (predict for NP_001321353.1)
other 9  (predict for NP_850936.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.9
for
AT1G06960
ath-u.5
for
AT1G06960
ath-r.7
for
AT1G06960
ath-e.2
for
AT1G06960
ath-m.4.bio
for
AT1G06960
ath-m.4.hor
for
AT1G06960
ath-m.4.lig
for
AT1G06960
ath-m.4.str
for
AT1G06960
ath-m.4.tis
for
AT1G06960
ath-u.5
for
U2B''
bra-r.6
for
103867968
bna-r.1
for
106452320
bna-r.1
for
106424909
bna-r.1
for
125603918
ghi-r.1
for
107935079
ghi-r.1
for
107927120
cit-r.1
for
102621915
gma-u.5
for
100805822
gma-u.5
for
100499914
vvi-u.5
for
100248478
ppo-u.5
for
18104685
ppo-u.5
for
112325212
mtr-u.5
for
25483670
mtr-u.5
for
11416715
sly-u.5
for
101249376
sot-r.1
for
102600261
nta-r.1
for
107829271
nta-r.1
for
107774892
osa-u.5
for
4332557
zma-u.5
for
100383254
zma-u.5
for
100283511
tae-r.2
for
123097730
tae-r.2
for
123092404
tae-r.2
for
123085623
hvu-r.1
for
123448868
sbi-r.1
for
8081113
bdi-r.1
for
100845326
cre-r.1
for
CHLRE_13g566700v5


Ortholog ID: 7166
Species ath ath bra bna bna bna ghi ghi cit gma gma vvi ppo ppo mtr mtr sly sot nta nta osa zma zma tae tae tae hvu sbi bdi cre
Symbol AT1G06960 U2B'' LOC103867968 LOC106452320 LOC106424909 LOC125603918 LOC107935079 LOC107927120 LOC102621915 LOC100805822 LOC100499914 LOC100248478 LOC18104685 LOC112325212 LOC25483670 LOC11416715 LOC101249376 LOC102600261 LOC107829271 LOC107774892 LOC4332557 LOC100383254 LOC100283511 LOC123097730 LOC123092404 LOC123085623 LOC123448868 LOC8081113 LOC100845326 CHLRE_13g566700v5
Function* RNA-binding (RRM/RBD/RNP motifs) family protein U2 small nuclear ribonucleoprotein B U2 small nuclear ribonucleoprotein B'' U2 small nuclear ribonucleoprotein B'' U2 small nuclear ribonucleoprotein B'' U2 small nuclear ribonucleoprotein B''-like U2 small nuclear ribonucleoprotein B'' 2 U2 small nuclear ribonucleoprotein B'' 2 U2 small nuclear ribonucleoprotein B'' 2 U2 small nuclear ribonucleoprotein B''-like uncharacterized LOC100499914 U2 small nuclear ribonucleoprotein B'' 2 U2 small nuclear ribonucleoprotein B'' 2 U2 small nuclear ribonucleoprotein B'' 2 U2 small nuclear ribonucleoprotein B'' 2 U2 small nuclear ribonucleoprotein B'' 2 U2 small nuclear ribonucleoprotein B'' U2 small nuclear ribonucleoprotein B''-like U2 small nuclear ribonucleoprotein B''-like U2 small nuclear ribonucleoprotein B'' U2 small nuclear ribonucleoprotein B''-like U2 small nuclear ribonucleoprotein B'' spliceosomal protein U2 small nuclear ribonucleoprotein B'' U2 small nuclear ribonucleoprotein B'' U2 small nuclear ribonucleoprotein B'' U2 small nuclear ribonucleoprotein B''-like U2 small nuclear ribonucleoprotein B'' U2 small nuclear ribonucleoprotein B'' uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03060 Protein export 2
ath03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03010 Ribosome 4
ath03040 Spliceosome 3
ath03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 18
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03010 Ribosome 15
bna03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03010 Ribosome 15
bna03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03010 Ribosome 9
bna03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 6
ghi03020 RNA polymerase 2
ghi03420 Nucleotide excision repair 2
ghi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 6
ghi03020 RNA polymerase 2
ghi03420 Nucleotide excision repair 2
ghi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03010 Ribosome 7
cit03040 Spliceosome 3
cit03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 9
gma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 10
gma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 6
ppo03050 Proteasome 5
ppo03040 Spliceosome 3
ppo03018 RNA degradation 2
ppo00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 6
ppo03082 ATP-dependent chromatin remodeling 2
ppo03008 Ribosome biogenesis in eukaryotes 2
ppo03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 11
mtr03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 15
mtr03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 17
sly03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 4
sot03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 10
nta03030 DNA replication 3
nta03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 7
nta03010 Ribosome 4
nta03013 Nucleocytoplasmic transport 3
nta03015 mRNA surveillance pathway 3
nta03030 DNA replication 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03010 Ribosome 8
osa03040 Spliceosome 5
osa03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 6
zma03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 3
zma03022 Basal transcription factors 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 7
tae03040 Spliceosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 15
tae03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 6
tae03010 Ribosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03040 Spliceosome 2
hvu00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 14
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03010 Ribosome 6
bdi03050 Proteasome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03040 Spliceosome 15
cre03013 Nucleocytoplasmic transport 4
cre03015 mRNA surveillance pathway 4
cre03018 RNA degradation 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 837206 817576 103867968 106452320 106424909 125603918 107935079 107927120 102621915 100805822 100499914 100248478 18104685 112325212 25483670 11416715 101249376 102600261 107829271 107774892 4332557 100383254 100283511 123097730 123092404 123085623 123448868 8081113 100845326 5719062
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