ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
ath-m.9	NF-YC9	nuclear factor Y, subunit C9
ath-u.5	NF-YC9	nuclear factor Y, subunit C9
ath-r.7	NF-YC9	nuclear factor Y, subunit C9
ath-e.2	NF-YC9	nuclear factor Y, subunit C9
ath-m.4.bio	NF-YC9	nuclear factor Y, subunit C9
ath-m.4.hor	NF-YC9	nuclear factor Y, subunit C9
ath-m.4.lig	NF-YC9	nuclear factor Y, subunit C9
ath-m.4.str	NF-YC9	nuclear factor Y, subunit C9
ath-m.4.tis	NF-YC9	nuclear factor Y, subunit C9
ath-u.5	NF-YC1	nuclear factor Y, subunit C1
ath-u.5	NF-YC4	nuclear factor Y, subunit C4
ath-u.5	NF-YC3	nuclear factor Y, subunit C3
bra-r.6	103843367	nuclear transcription factor Y subunit C-9
bra-r.6	103871634	nuclear transcription factor Y subunit C-9
bra-r.6	103873128	nuclear transcription factor Y subunit C-1
bna-r.1	125610291	nuclear transcription factor Y subunit C-1-like
bna-r.1	106345689	nuclear transcription factor Y subunit C-9
bna-r.1	106346297	nuclear transcription factor Y subunit C-9
ghi-r.1	121203061	nuclear transcription factor Y subunit C-2
ghi-r.1	107894416	nuclear transcription factor Y subunit C-9
cit-r.1	102609372	nuclear transcription factor Y subunit C-9
cit-r.1	102617055	nuclear transcription factor Y subunit C-1
cit-r.1	102628121	nuclear transcription factor Y subunit C-2
gma-u.5	NF-YC03	nuclear factor Y transcription factor family protein
gma-u.5	NF-YC14	nuclear factor Y transcription factor
gma-u.5	NF-YC07	nuclear factor Y transcription factor family protein
vvi-u.5	100243367	nuclear transcription factor Y subunit C-2
vvi-u.5	100266507	nuclear transcription factor Y subunit C-3
vvi-u.5	100258035	nuclear transcription factor Y subunit C-9
ppo-u.5	7454724	nuclear transcription factor Y subunit C-1
ppo-u.5	7473301	nuclear transcription factor Y subunit C-3
ppo-u.5	7492093	nuclear transcription factor Y subunit C-2
mtr-u.5	120578221	nuclear transcription factor Y subunit C-2
mtr-u.5	11429780	nuclear transcription factor Y subunit C-3
mtr-u.5	11429705	nuclear transcription factor Y subunit C-1
sly-u.5	101247122	nuclear transcription factor Y subunit C-1
sly-u.5	CIP2a	CONSTANS interacting protein 2a
sly-u.5	CIP2b	CONSTANS interacting protein 2b
sot-r.1	102587685	nuclear transcription factor Y subunit C-9-like
sot-r.1	102597101	nuclear transcription factor Y subunit C-1-like
sot-r.1	102603380	nuclear transcription factor Y subunit C-1-like
nta-r.1	107765408	nuclear transcription factor Y subunit C-1
nta-r.1	107797519	nuclear transcription factor Y subunit C-1
nta-r.1	107801701	nuclear transcription factor Y subunit C-9-like
osa-u.5	9266204	nuclear transcription factor Y subunit C-2-like
osa-u.5	4328444	nuclear transcription factor Y subunit C-4-like
osa-u.5	4341785	nuclear transcription factor Y subunit C-4-like
zma-u.5	100277570	Nuclear transcription factor Y subunit C-9
zma-u.5	100281601	nuclear transcription factor Y subunit C-1
zma-u.5	100282924	uncharacterized LOC100282924
tae-r.2	123098047	nuclear transcription factor Y subunit C-2
tae-r.2	123104106	nuclear transcription factor Y subunit C-6
tae-r.2	123136650	nuclear transcription factor Y subunit C-4
hvu-r.1	123408918	nuclear transcription factor Y subunit C-6-like
hvu-r.1	123401541	nuclear transcription factor Y subunit C-4-like
hvu-r.1	123399206	nuclear transcription factor Y subunit C-6-like
sbi-r.1	8067022	nuclear transcription factor Y subunit C-6
sbi-r.1	110431645	nuclear transcription factor Y subunit C-2-like
sbi-r.1	8071112	nuclear transcription factor Y subunit C-4
bdi-r.1	100832359	nuclear transcription factor Y subunit C-6
bdi-r.1	100836803	nuclear transcription factor Y subunit C-2
bdi-r.1	100838294	nuclear transcription factor Y subunit C-4
cre-r.1	CHLRE_12g556400v5	uncharacterized protein

Top 50 coexpressed genes to NF-YC9 (ath-m.9 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to NF-YC9 (ath-m.9 coexpression data)

CoexMap"837417"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO:2000306 [list] [network] positive regulation of photomorphogenesis	(8 genes)	IMP
GO:0009740 [list] [network] gibberellic acid mediated signaling pathway	(41 genes)	IGI
GO:0010029 [list] [network] regulation of seed germination	(105 genes)	IGI
GO:0009738 [list] [network] abscisic acid-activated signaling pathway	(111 genes)	IGI

GO CC

GO:0005576 [list] [network] extracellular region	(3158 genes)	HDA
GO:0005634 [list] [network] nucleus	(10367 genes)	HDA ISM
GO:0005737 [list] [network] cytoplasm	(14000 genes)	HDA

GO MF

GO:0000976 [list] [network] transcription cis-regulatory region binding	(716 genes)	IPI
GO:0043565 [list] [network] sequence-specific DNA binding	(875 genes)	IDA
GO:0003700 [list] [network] DNA-binding transcription factor activity	(1620 genes)	ISS
GO:0005515 [list] [network] protein binding	(5363 genes)	IPI

Protein

NP_172371.1 [sequence] [blastp]
NP_849619.1 [sequence] [blastp]
NP_973796.1 [sequence] [blastp]
NP_973797.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 7, mito 1, cyto 1, plas 1, chlo_mito 1, cyto_mito 1, cyto_plas 1	(predict for NP_172371.1)
nucl 7, mito 1, cyto 1, plas 1, chlo_mito 1, cyto_mito 1, cyto_plas 1	(predict for NP_849619.1)
nucl 7, mito 1, cyto 1, plas 1, chlo_mito 1, cyto_mito 1, cyto_plas 1	(predict for NP_973796.1)
nucl 7, mito 1, cyto 1, plas 1, chlo_mito 1, cyto_mito 1, cyto_plas 1	(predict for NP_973797.1)

Subcellular
localization
TargetP

other 9	(predict for NP_172371.1)
other 9	(predict for NP_849619.1)
other 9	(predict for NP_973796.1)
other 9	(predict for NP_973797.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target				Condition-specific^*					Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ath-m.9 for NF-YC9	ath-u.5 for NF-YC9	ath-r.7 for NF-YC9	ath-e.2 for NF-YC9	ath-m.4.bio for NF-YC9	ath-m.4.hor for NF-YC9	ath-m.4.lig for NF-YC9	ath-m.4.str for NF-YC9	ath-m.4.tis for NF-YC9	ath-u.5 for NF-YC1	ath-u.5 for NF-YC4	ath-u.5 for NF-YC3	bra-r.6 for 103843367	bra-r.6 for 103871634	bra-r.6 for 103873128	bna-r.1 for 125610291	bna-r.1 for 106345689	bna-r.1 for 106346297	ghi-r.1 for 121203061	ghi-r.1 for 107894416	cit-r.1 for 102609372	cit-r.1 for 102617055	cit-r.1 for 102628121	gma-u.5 for NF-YC03	gma-u.5 for NF-YC14	gma-u.5 for NF-YC07	vvi-u.5 for 100243367	vvi-u.5 for 100266507	vvi-u.5 for 100258035	ppo-u.5 for 7454724	ppo-u.5 for 7473301	ppo-u.5 for 7492093	mtr-u.5 for 120578221	mtr-u.5 for 11429780	mtr-u.5 for 11429705	sly-u.5 for 101247122	sly-u.5 for CIP2a	sly-u.5 for CIP2b	sot-r.1 for 102587685	sot-r.1 for 102597101	sot-r.1 for 102603380	nta-r.1 for 107765408	nta-r.1 for 107797519	nta-r.1 for 107801701	osa-u.5 for 9266204	osa-u.5 for 4328444	osa-u.5 for 4341785	zma-u.5 for 100277570	zma-u.5 for 100281601	zma-u.5 for 100282924	tae-r.2 for 123098047	tae-r.2 for 123104106	tae-r.2 for 123136650	hvu-r.1 for 123408918	hvu-r.1 for 123401541	hvu-r.1 for 123399206	sbi-r.1 for 8067022	sbi-r.1 for 110431645	sbi-r.1 for 8071112	bdi-r.1 for 100832359	bdi-r.1 for 100836803	bdi-r.1 for 100838294	cre-r.1 for CHLRE_12g556400v5

Ortholog

Ortholog ID: 623

Species

ath

bra

bna

ghi

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

NF-YC9

NF-YC4

NF-YC07

NF-YC06

NF-YC04

CIP2a

CIP2b

Function^*

nuclear factor Y, subunit C9

nuclear factor Y, subunit C4

nuclear transcription factor Y subunit C-9