ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
ath-m.9	AT1G11020	RING/FYVE/PHD zinc finger superfamily protein
ath-u.5	AT1G11020	RING/FYVE/PHD zinc finger superfamily protein
ath-r.7	AT1G11020	RING/FYVE/PHD zinc finger superfamily protein
ath-e.2	AT1G11020	RING/FYVE/PHD zinc finger superfamily protein
ath-m.4.bio	AT1G11020	RING/FYVE/PHD zinc finger superfamily protein
ath-m.4.hor	AT1G11020	RING/FYVE/PHD zinc finger superfamily protein
ath-m.4.lig	AT1G11020	RING/FYVE/PHD zinc finger superfamily protein
ath-m.4.str	AT1G11020	RING/FYVE/PHD zinc finger superfamily protein
ath-m.4.tis	AT1G11020	RING/FYVE/PHD zinc finger superfamily protein
ath-u.5	AT2G22120	RING/FYVE/PHD zinc finger superfamily protein
ath-u.5	AT1G50440	RING/FYVE/PHD zinc finger superfamily protein
bra-r.6	103843275	E3 ubiquitin-protein ligase MARCH1
bra-r.6	103842479	uncharacterized LOC103842479
bra-r.6	103868623	E3 ubiquitin-protein ligase MARCH2
bna-r.1	106420606	uncharacterized LOC106420606
bna-r.1	106420210	uncharacterized LOC106420210
bna-r.1	BNAC08G35350D	uncharacterized BNAC08G35350D
ghi-r.1	107932063	uncharacterized LOC107932063
ghi-r.1	107886474	uncharacterized LOC107886474
ghi-r.1	107902050	E3 ubiquitin-protein ligase MARCHF8
cit-r.1	102616516	uncharacterized LOC102616516
cit-r.1	102611287	hypothetical protein
cit-r.1	102620013	uncharacterized LOC102620013
gma-u.5	100791777	uncharacterized LOC100791777
gma-u.5	100782178	C4HC3-type ring finger domain-containing protein
gma-u.5	100789593	E3 ubiquitin-protein ligase MARCH1-like
vvi-u.5	100251272	uncharacterized LOC100251272
vvi-u.5	100266317	uncharacterized LOC100266317
vvi-u.5	100254401	uncharacterized LOC100254401
ppo-u.5	18100967	uncharacterized LOC18100967
ppo-u.5	7484686	uncharacterized LOC7484686
mtr-u.5	11418111	uncharacterized LOC11418111
mtr-u.5	11442838	uncharacterized LOC11442838
mtr-u.5	25488027	E3 ubiquitin-protein ligase MARCHF2
sly-u.5	101263685	uncharacterized LOC101263685
sly-u.5	101258247	uncharacterized LOC101258247
sly-u.5	101246707	uncharacterized LOC101246707
sot-r.1	102603806	E3 ubiquitin-protein ligase MARCH8
sot-r.1	102603834	uncharacterized LOC102603834
sot-r.1	107062139	uncharacterized LOC107062139
nta-r.1	107784149	uncharacterized LOC107784149
nta-r.1	107785357	uncharacterized LOC107785357
nta-r.1	107786019	uncharacterized LOC107786019
osa-u.5	4350877	uncharacterized LOC4350877
osa-u.5	4327736	uncharacterized LOC4327736
osa-u.5	4328203	uncharacterized LOC4328203
zma-u.5	100285184	zinc finger, C3HC4 type family protein
zma-u.5	100282791	uncharacterized LOC100282791
zma-u.5	100282293	uncharacterized LOC100282293
tae-r.2	123092121	uncharacterized LOC123092121
tae-r.2	123086050	uncharacterized LOC123086050
tae-r.2	123097251	uncharacterized LOC123097251
hvu-r.1	123448506	uncharacterized LOC123448506
hvu-r.1	123408768	uncharacterized LOC123408768
hvu-r.1	123406022	uncharacterized LOC123406022
sbi-r.1	8074378	uncharacterized LOC8074378
sbi-r.1	8060005	uncharacterized LOC8060005
bdi-r.1	100840561	uncharacterized LOC100840561
bdi-r.1	100827595	uncharacterized LOC100827595
bdi-r.1	100823188	E3 ubiquitin-protein ligase MARCH9
cre-r.1	CHLRE_12g517800v5	uncharacterized protein
cre-r.1	CHLRE_12g517850v5	uncharacterized protein

Top 50 coexpressed genes to AT1G11020 (ath-m.9 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to AT1G11020 (ath-m.9 coexpression data)

CoexMap"837644"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO CC

GO:0005737 [list] [network] cytoplasm

(14000 genes)

ISM

GO MF

GO:0008270 [list] [network] zinc ion binding

(391 genes)

IEA

Protein

NP_563883.1 [sequence] [blastp]

Subcellular
localization
wolf

plas 4, E.R. 4, E.R._plas 4

(predict for NP_563883.1)

Subcellular
localization
TargetP

other 6, chlo 3

(predict for NP_563883.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target				Condition-specific^*					Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ath-m.9 for AT1G11020	ath-u.5 for AT1G11020	ath-r.7 for AT1G11020	ath-e.2 for AT1G11020	ath-m.4.bio for AT1G11020	ath-m.4.hor for AT1G11020	ath-m.4.lig for AT1G11020	ath-m.4.str for AT1G11020	ath-m.4.tis for AT1G11020	ath-u.5 for AT2G22120	ath-u.5 for AT1G50440	bra-r.6 for 103843275	bra-r.6 for 103842479	bra-r.6 for 103868623	bna-r.1 for 106420606	bna-r.1 for 106420210	bna-r.1 for BNAC08G35350D	ghi-r.1 for 107932063	ghi-r.1 for 107886474	ghi-r.1 for 107902050	cit-r.1 for 102616516	cit-r.1 for 102611287	cit-r.1 for 102620013	gma-u.5 for 100791777	gma-u.5 for 100782178	gma-u.5 for 100789593	vvi-u.5 for 100251272	vvi-u.5 for 100266317	vvi-u.5 for 100254401	ppo-u.5 for 18100967	ppo-u.5 for 7484686	mtr-u.5 for 11418111	mtr-u.5 for 11442838	mtr-u.5 for 25488027	sly-u.5 for 101263685	sly-u.5 for 101258247	sly-u.5 for 101246707	sot-r.1 for 102603806	sot-r.1 for 102603834	sot-r.1 for 107062139	nta-r.1 for 107784149	nta-r.1 for 107785357	nta-r.1 for 107786019	osa-u.5 for 4350877	osa-u.5 for 4327736	osa-u.5 for 4328203	zma-u.5 for 100285184	zma-u.5 for 100282791	zma-u.5 for 100282293	tae-r.2 for 123092121	tae-r.2 for 123086050	tae-r.2 for 123097251	hvu-r.1 for 123448506	hvu-r.1 for 123408768	hvu-r.1 for 123406022	sbi-r.1 for 8074378	sbi-r.1 for 8060005	bdi-r.1 for 100840561	bdi-r.1 for 100827595	bdi-r.1 for 100823188	cre-r.1 for CHLRE_12g517800v5	cre-r.1 for CHLRE_12g517850v5

Ortholog

Ortholog ID: 947

Species

ath

bra

bna

ghi

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

Function^*

RING/FYVE/PHD zinc finger superfamily protein

E3 ubiquitin-protein ligase MARCH1

uncharacterized LOC103842479

uncharacterized LOC103868064

uncharacterized BNAC08G35350D

E3 ubiquitin-protein ligase MARCHF2

uncharacterized LOC106362436

E3 ubiquitin-protein ligase MARCHF8

uncharacterized LOC107911492

E3 ubiquitin-protein ligase MARCHF8

uncharacterized LOC102616516

hypothetical protein

uncharacterized LOC102620013

C4HC3-type ring finger domain-containing protein

E3 ubiquitin-protein ligase MARCH1-like

C4HC3-type ring finger domain-containing protein

uncharacterized LOC100251272

uncharacterized LOC100266317

uncharacterized LOC100254401

uncharacterized LOC7484686

uncharacterized LOC7486324

uncharacterized LOC7490849

uncharacterized LOC11418111

uncharacterized LOC11442838

E3 ubiquitin-protein ligase MARCHF2

uncharacterized LOC101263685

uncharacterized LOC101258247

uncharacterized LOC101249644

E3 ubiquitin-protein ligase MARCH8

uncharacterized LOC102603834

uncharacterized LOC107062139

uncharacterized LOC107786019

uncharacterized LOC107789319

uncharacterized LOC107805455

uncharacterized LOC4327736

uncharacterized LOC4328203

uncharacterized LOC4345452

zinc finger, C3HC4 type family protein

uncharacterized LOC103651597

uncharacterized LOC123163216

uncharacterized LOC123154189

uncharacterized LOC123136093

uncharacterized LOC123448506

uncharacterized LOC123408768

uncharacterized LOC123406022

uncharacterized LOC8060005

uncharacterized LOC8054370

uncharacterized LOC100840561

uncharacterized LOC100827595

E3 ubiquitin-protein ligase MARCH9

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath00510	N-Glycan biosynthesis	3
ath00513	Various types of N-glycan biosynthesis	3
ath04141	Protein processing in endoplasmic reticulum	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03015	mRNA surveillance pathway	2
ath04382	Cornified envelope formation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04120	Ubiquitin mediated proteolysis	3
bra04141	Protein processing in endoplasmic reticulum	3
bra03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00190	Oxidative phosphorylation	2
bna04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04120	Ubiquitin mediated proteolysis	2
ghi00480	Glutathione metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00190	Oxidative phosphorylation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit04141	Protein processing in endoplasmic reticulum	3
cit04120	Ubiquitin mediated proteolysis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit00071	Fatty acid degradation	2
cit01212	Fatty acid metabolism	2
cit04146	Peroxisome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03010	Ribosome	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04141	Protein processing in endoplasmic reticulum	3
vvi04145	Phagosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi00520	Amino sugar and nucleotide sugar metabolism	2
vvi01250	Biosynthesis of nucleotide sugars	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04382	Cornified envelope formation	3
ppo04120	Ubiquitin mediated proteolysis	2
ppo00600	Sphingolipid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04142	Lysosome	3
ppo00190	Oxidative phosphorylation	2
ppo04145	Phagosome	2
ppo04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04130	SNARE interactions in vesicular transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04144	Endocytosis	4
mtr04130	SNARE interactions in vesicular transport	2
mtr03083	Polycomb repressive complex	2
mtr04120	Ubiquitin mediated proteolysis	2
mtr04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03020	RNA polymerase	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04142	Lysosome	3
sly00600	Sphingolipid metabolism	2
sly00511	Other glycan degradation	2
sly00531	Glycosaminoglycan degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03010	Ribosome	20

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03022	Basal transcription factors	2
nta04122	Sulfur relay system	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03050	Proteasome	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa02010	ABC transporters	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma01200	Carbon metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04626	Plant-pathogen interaction	2
zma03083	Polycomb repressive complex	2
zma04120	Ubiquitin mediated proteolysis	2
zma04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04144	Endocytosis	4
tae04626	Plant-pathogen interaction	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04626	Plant-pathogen interaction	3
tae04144	Endocytosis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu04142	Lysosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu04141	Protein processing in endoplasmic reticulum	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04141	Protein processing in endoplasmic reticulum	2
sbi04712	Circadian rhythm - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi00190	Oxidative phosphorylation	4
bdi00020	Citrate cycle (TCA cycle)	2
bdi01200	Carbon metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre04144	Endocytosis	6
cre03250	Viral life cycle - HIV-1	2
cre03272	Virion - Hepatitis viruses	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre00230	Purine metabolism	4

Expression

Expression pattern

Entrez Gene ID^*

837644

816746

841466

103843275

103842479

103868064

106416193

106368829

106362436

107902050

107911492

107934050

102616516

102611287

102620013

100782178

100789593

100818950

100251272

100266317

100254401

7484686

7486324

7490849

11418111

11442838

25488027

101263685

101258247

101249644

102603806

102603834

107062139

107786019

107789319

107805455

4327736

4328203

4345452

100285184

100216849

103651597

123163216

123154189

123136093

123448506

123408768

123406022

8060005

8054370

100840561

100827595

100823188

5722635

5722634

The preparation time of this page was 0.2 [sec].


Species	ath	bra	bna	ghi	cit	gma	vvi	ppo	mtr	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	11	3	3	3	3	3	3	2	3	3	3	3	3	3	3	3	2	3	2

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to AT1G11020 (ath-m.9 coexpression data)

Top 50 enrichment test to AT1G11020 (ath-m.9 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**