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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.9   CCS   copper chaperone for SOD1 
 ath-u.5   CCS   copper chaperone for SOD1 
 ath-r.7   CCS   copper chaperone for SOD1 
 ath-e.2   CCS   copper chaperone for SOD1 
 ath-m.4.bio   CCS   copper chaperone for SOD1 
 ath-m.4.hor   CCS   copper chaperone for SOD1 
 ath-m.4.lig   CCS   copper chaperone for SOD1 
 ath-m.4.str   CCS   copper chaperone for SOD1 
 ath-m.4.tis   CCS   copper chaperone for SOD1 
 bra-r.6   103843124   copper chaperone for superoxide dismutase, chloroplastic/cytosolic 
 bra-r.6   103836158   copper chaperone for superoxide dismutase, chloroplastic/cytosolic 
 bna-r.1   106401698   copper chaperone for superoxide dismutase, chloroplastic/cytosolic 
 bna-r.1   106382386   copper chaperone for superoxide dismutase, chloroplastic/cytosolic-like 
 bna-r.1   106411727   copper chaperone for superoxide dismutase, chloroplastic/cytosolic 
 ghi-r.1   107930044   copper chaperone for superoxide dismutase, chloroplastic/cytosolic 
 ghi-r.1   107926973   copper chaperone for superoxide dismutase, chloroplastic/cytosolic 
 cit-r.1   102620720   copper chaperone for superoxide dismutase, chloroplastic/cytosolic 
 gma-u.5   CCS   Cu/Zn-superoxide dismutase copper chaperone 
 vvi-u.5   100263358   copper chaperone for superoxide dismutase, chloroplastic/cytosolic 
 ppo-u.5   18094427   copper chaperone for superoxide dismutase, chloroplastic/cytosolic 
 ppo-u.5   7465821   copper chaperone for superoxide dismutase, chloroplastic/cytosolic 
 mtr-u.5   11407925   copper chaperone for superoxide dismutase, chloroplastic/cytosolic 
 sly-u.5   CCS   copper chaperone for superoxide dismutase 
 sot-r.1   102598129   copper chaperone for superoxide dismutase, chloroplastic/cytosolic 
 nta-r.1   107800528   copper chaperone for superoxide dismutase, chloroplastic/cytosolic-like 
 nta-r.1   107828097   copper chaperone for superoxide dismutase, chloroplastic/cytosolic 
 osa-u.5   4336726   copper chaperone for superoxide dismutase, chloroplastic-like 
 zma-u.5   103641949   copper chaperone for superoxide dismutase, chloroplastic 
 zma-u.5   100283786   uncharacterized LOC100283786 
 tae-r.2   123190020   copper chaperone for superoxide dismutase, chloroplastic 
 tae-r.2   123054125   copper chaperone for superoxide dismutase, chloroplastic 
 tae-r.2   123046255   copper chaperone for superoxide dismutase, chloroplastic 
 hvu-r.1   123427455   copper chaperone for superoxide dismutase, chloroplastic 
 sbi-r.1   110436325   copper chaperone for superoxide dismutase, chloroplastic 
 bdi-r.1   100833344   copper chaperone for superoxide dismutase, chloroplastic 

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Top 50 coexpressed genes to CCS (ath-m.9 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CCS (ath-m.9 coexpression data)

CoexMap"837808"


athCCS | Entrez gene ID : 837808      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 9 2 3 2 1 1 1 2 1 1 1 2 1 2 3 1 1 1 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0006878 [list] [network] intracellular copper ion homeostasis  (7 genes)  TAS  
GO CC
GO:0009570 [list] [network] chloroplast stroma  (693 genes)  HDA  
GO:0009507 [list] [network] chloroplast  (5014 genes)  HDA IDA ISM  
GO:0005737 [list] [network] cytoplasm  (14000 genes)  ISM  
GO MF
GO:0016532 [list] [network] superoxide dismutase copper chaperone activity  (2 genes)  IGI IMP  
Protein NP_001031029.1 [sequence] [blastp]
NP_001031030.1 [sequence] [blastp]
NP_563910.2 [sequence] [blastp]
Subcellular
localization
wolf
cyto 4,  chlo 3,  mito 1,  pero 1  (predict for NP_001031029.1)
chlo 6,  cyto 3,  chlo_mito 3  (predict for NP_001031030.1)
chlo 9  (predict for NP_563910.2)
Subcellular
localization
TargetP
other 9  (predict for NP_001031029.1)
other 5,  mito 5  (predict for NP_001031030.1)
chlo 8  (predict for NP_563910.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.9
for
CCS
ath-u.5
for
CCS
ath-r.7
for
CCS
ath-e.2
for
CCS
ath-m.4.bio
for
CCS
ath-m.4.hor
for
CCS
ath-m.4.lig
for
CCS
ath-m.4.str
for
CCS
ath-m.4.tis
for
CCS
bra-r.6
for
103843124
bra-r.6
for
103836158
bna-r.1
for
106401698
bna-r.1
for
106382386
bna-r.1
for
106411727
ghi-r.1
for
107930044
ghi-r.1
for
107926973
cit-r.1
for
102620720
gma-u.5
for
CCS
vvi-u.5
for
100263358
ppo-u.5
for
18094427
ppo-u.5
for
7465821
mtr-u.5
for
11407925
sly-u.5
for
CCS
sot-r.1
for
102598129
nta-r.1
for
107800528
nta-r.1
for
107828097
osa-u.5
for
4336726
zma-u.5
for
103641949
zma-u.5
for
100283786
tae-r.2
for
123190020
tae-r.2
for
123054125
tae-r.2
for
123046255
hvu-r.1
for
123427455
sbi-r.1
for
110436325
bdi-r.1
for
100833344


Ortholog ID: 8691
Species ath bra bra bna bna bna ghi ghi cit gma vvi ppo ppo mtr sly sot nta nta osa zma zma tae tae tae hvu sbi bdi
Symbol CCS LOC103843124 LOC103836158 LOC106401698 LOC106382386 LOC106435985 LOC107930044 LOC107926973 LOC102620720 CCS LOC100263358 LOC18094427 LOC7465821 LOC11407925 CCS LOC102598129 LOC107800528 LOC107828097 LOC4336726 LOC103641949 LOC100283786 LOC123190020 LOC123054125 LOC123046255 LOC123427455 LOC110436325 LOC100833344
Function* copper chaperone for SOD1 copper chaperone for superoxide dismutase, chloroplastic/cytosolic copper chaperone for superoxide dismutase, chloroplastic/cytosolic copper chaperone for superoxide dismutase, chloroplastic/cytosolic copper chaperone for superoxide dismutase, chloroplastic/cytosolic-like copper chaperone for superoxide dismutase, chloroplastic/cytosolic copper chaperone for superoxide dismutase, chloroplastic/cytosolic copper chaperone for superoxide dismutase, chloroplastic/cytosolic copper chaperone for superoxide dismutase, chloroplastic/cytosolic Cu/Zn-superoxide dismutase copper chaperone copper chaperone for superoxide dismutase, chloroplastic/cytosolic copper chaperone for superoxide dismutase, chloroplastic/cytosolic copper chaperone for superoxide dismutase, chloroplastic/cytosolic copper chaperone for superoxide dismutase, chloroplastic/cytosolic copper chaperone for superoxide dismutase copper chaperone for superoxide dismutase, chloroplastic/cytosolic copper chaperone for superoxide dismutase, chloroplastic/cytosolic-like copper chaperone for superoxide dismutase, chloroplastic/cytosolic copper chaperone for superoxide dismutase, chloroplastic-like copper chaperone for superoxide dismutase, chloroplastic uncharacterized LOC100283786 copper chaperone for superoxide dismutase, chloroplastic copper chaperone for superoxide dismutase, chloroplastic copper chaperone for superoxide dismutase, chloroplastic copper chaperone for superoxide dismutase, chloroplastic copper chaperone for superoxide dismutase, chloroplastic copper chaperone for superoxide dismutase, chloroplastic
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04146 Peroxisome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04146 Peroxisome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04146 Peroxisome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00900 Terpenoid backbone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00900 Terpenoid backbone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00900 Terpenoid backbone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04146 Peroxisome 4
ghi00190 Oxidative phosphorylation 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04146 Peroxisome 4
ghi00190 Oxidative phosphorylation 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04141 Protein processing in endoplasmic reticulum 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04146 Peroxisome 5
gma00900 Terpenoid backbone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04146 Peroxisome 3
vvi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04146 Peroxisome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04146 Peroxisome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00190 Oxidative phosphorylation 7
mtr01200 Carbon metabolism 3
mtr03010 Ribosome 2
mtr00020 Citrate cycle (TCA cycle) 2
mtr00640 Propanoate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly01230 Biosynthesis of amino acids 3
sly00010 Glycolysis / Gluconeogenesis 2
sly00710 Carbon fixation by Calvin cycle 2
sly01200 Carbon metabolism 2
sly03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04146 Peroxisome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00480 Glutathione metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00480 Glutathione metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04146 Peroxisome 4
osa01230 Biosynthesis of amino acids 2
osa03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03010 Ribosome 6
zma04146 Peroxisome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04146 Peroxisome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04146 Peroxisome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04146 Peroxisome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00620 Pyruvate metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03040 Spliceosome 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 837808 103843124 103836158 106401698 106382386 106435985 107930044 107926973 102620720 547617 100263358 18094427 7465821 11407925 544169 102598129 107800528 107828097 4336726 103641949 100283786 123190020 123054125 123046255 123427455 110436325 100833344
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