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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.9   PAPS1   poly(A) polymerase 1 
 ath-u.5   PAPS1   poly(A) polymerase 1 
 ath-r.7   PAPS1   poly(A) polymerase 1 
 ath-e.2   PAPS1   poly(A) polymerase 1 
 ath-m.4.bio   PAPS1   poly(A) polymerase 1 
 ath-m.4.hor   PAPS1   poly(A) polymerase 1 
 ath-m.4.lig   PAPS1   poly(A) polymerase 1 
 ath-m.4.str   PAPS1   poly(A) polymerase 1 
 ath-m.4.tis   PAPS1   poly(A) polymerase 1 
 ath-u.5   PAPS2   poly(A) polymerase 2 
 ath-u.5   nPAP   nuclear poly(a) polymerase 
 bra-r.6   103835928   nuclear poly(A) polymerase 1 
 bra-r.6   103842726   nuclear poly(A) polymerase 1 
 bna-r.1   125578563   nuclear poly(A) polymerase 1-like 
 bna-r.1   125591720   nuclear poly(A) polymerase 1-like 
 ghi-r.1   107890837   nuclear poly(A) polymerase 1 
 ghi-r.1   107929924   nuclear poly(A) polymerase 4 
 ghi-r.1   107898378   nuclear poly(A) polymerase 1 
 cit-r.1   102622420   nuclear poly(A) polymerase 1-like 
 cit-r.1   102621281   nuclear poly(A) polymerase 4-like 
 cit-r.1   102613009   nuclear poly(A) polymerase 4-like 
 gma-u.5   100783237   nuclear poly(A) polymerase 4 
 gma-u.5   100798218   nuclear poly(A) polymerase 4 
 gma-u.5   100802620   nuclear poly(A) polymerase 4 
 vvi-u.5   100252483   nuclear poly(A) polymerase 1 
 vvi-u.5   100268087   nuclear poly(A) polymerase 1 
 ppo-u.5   7463733   nuclear poly(A) polymerase 4 
 ppo-u.5   7462286   nuclear poly(A) polymerase 4 
 ppo-u.5   7453892   nuclear poly(A) polymerase 1 
 mtr-u.5   25490147   nuclear poly(A) polymerase 4 
 mtr-u.5   11434036   nuclear poly(A) polymerase 4 
 mtr-u.5   11414390   nuclear poly(A) polymerase 1 
 sly-u.5   101266027   nuclear poly(A) polymerase 1 
 sly-u.5   101247241   nuclear poly(A) polymerase 4-like 
 sly-u.5   101268462   nuclear poly(A) polymerase 4 
 sot-r.1   102594846   nuclear poly(A) polymerase 1 
 sot-r.1   102597372   nuclear poly(A) polymerase 4 
 sot-r.1   102600244   nuclear poly(A) polymerase 4-like 
 nta-r.1   107762435   nuclear poly(A) polymerase 1 
 nta-r.1   107766494   nuclear poly(A) polymerase 4 
 nta-r.1   107778577   nuclear poly(A) polymerase 4-like 
 osa-u.5   9268632   nuclear poly(A) polymerase 4 
 osa-u.5   4328790   nuclear poly(A) polymerase 4 
 osa-u.5   4340886   nuclear poly(A) polymerase 1 
 zma-u.5   100280371   Nuclear poly(A) polymerase 2 
 zma-u.5   100382126   uncharacterized LOC100382126 
 tae-r.2   123086936   nuclear poly(A) polymerase 1 
 tae-r.2   123144415   nuclear poly(A) polymerase 4 
 tae-r.2   123091042   nuclear poly(A) polymerase 1 
 hvu-r.1   123447712   nuclear poly(A) polymerase 1-like 
 hvu-r.1   123404828   nuclear poly(A) polymerase 4-like 
 hvu-r.1   123410067   nuclear poly(A) polymerase 4-like 
 sbi-r.1   8056755   nuclear poly(A) polymerase 1 
 sbi-r.1   8061974   nuclear poly(A) polymerase 4 
 sbi-r.1   8085547   nuclear poly(A) polymerase 4 
 bdi-r.1   100827786   nuclear poly(A) polymerase 1 
 bdi-r.1   100844248   nuclear poly(A) polymerase 4 
 bdi-r.1   100823067   nuclear poly(A) polymerase 4 
 cre-r.1   CHLRE_10g433750v5   uncharacterized protein 

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Top 50 coexpressed genes to PAPS1 (ath-m.9 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to PAPS1 (ath-m.9 coexpression data)

CoexMap"838378"


athPAPS1 | Entrez gene ID : 838378      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 11 2 2 3 3 3 2 3 3 3 3 3 3 2 3 3 3 3 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ath03015 [list] [network] mRNA surveillance pathway (119 genes)
GO BP
GO:0048451 [list] [network] petal formation  (4 genes)  IMP  
GO:0045824 [list] [network] negative regulation of innate immune response  (24 genes)  IMP  
GO:0031123 [list] [network] RNA 3'-end processing  (25 genes)  IEA  
GO:0008285 [list] [network] negative regulation of cell population proliferation  (42 genes)  IMP  
GO:0048366 [list] [network] leaf development  (371 genes)  IMP  
GO:0009908 [list] [network] flower development  (378 genes)  IMP  
GO CC
GO:0005634 [list] [network] nucleus  (10367 genes)  IDA ISM  
GO MF
GO:0005515 [list] [network] protein binding  (5363 genes)  IPI  
Protein NP_173240.2 [sequence] [blastp]
NP_973855.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 8,  cyto 1  (predict for NP_173240.2)
nucl 9  (predict for NP_973855.1)
Subcellular
localization
TargetP
other 7  (predict for NP_173240.2)
other 9  (predict for NP_973855.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.9
for
PAPS1
ath-u.5
for
PAPS1
ath-r.7
for
PAPS1
ath-e.2
for
PAPS1
ath-m.4.bio
for
PAPS1
ath-m.4.hor
for
PAPS1
ath-m.4.lig
for
PAPS1
ath-m.4.str
for
PAPS1
ath-m.4.tis
for
PAPS1
ath-u.5
for
PAPS2
ath-u.5
for
nPAP
bra-r.6
for
103835928
bra-r.6
for
103842726
bna-r.1
for
125578563
bna-r.1
for
125591720
ghi-r.1
for
107890837
ghi-r.1
for
107929924
ghi-r.1
for
107898378
cit-r.1
for
102622420
cit-r.1
for
102621281
cit-r.1
for
102613009
gma-u.5
for
100783237
gma-u.5
for
100798218
gma-u.5
for
100802620
vvi-u.5
for
100252483
vvi-u.5
for
100268087
ppo-u.5
for
7463733
ppo-u.5
for
7462286
ppo-u.5
for
7453892
mtr-u.5
for
25490147
mtr-u.5
for
11434036
mtr-u.5
for
11414390
sly-u.5
for
101266027
sly-u.5
for
101247241
sly-u.5
for
101268462
sot-r.1
for
102594846
sot-r.1
for
102597372
sot-r.1
for
102600244
nta-r.1
for
107762435
nta-r.1
for
107766494
nta-r.1
for
107778577
osa-u.5
for
9268632
osa-u.5
for
4328790
osa-u.5
for
4340886
zma-u.5
for
100280371
zma-u.5
for
100382126
tae-r.2
for
123086936
tae-r.2
for
123144415
tae-r.2
for
123091042
hvu-r.1
for
123447712
hvu-r.1
for
123404828
hvu-r.1
for
123410067
sbi-r.1
for
8056755
sbi-r.1
for
8061974
sbi-r.1
for
8085547
bdi-r.1
for
100827786
bdi-r.1
for
100844248
bdi-r.1
for
100823067
cre-r.1
for
CHLRE_10g433750v5


Ortholog ID: 1121
Species ath ath ath bra bra bra bna bna ghi ghi ghi cit cit cit gma gma gma vvi vvi ppo ppo ppo mtr mtr mtr sly sly sly sot sot sot nta nta nta osa osa osa zma zma tae tae tae hvu hvu hvu sbi sbi sbi bdi bdi bdi cre
Symbol PAPS1 PAPS2 nPAP LOC103835928 LOC103850374 LOC103864694 LOC106365247 LOC106369039 LOC107898378 LOC107951394 LOC107891713 LOC102622420 LOC102621281 LOC102613009 LOC100798218 LOC100802620 LOC100816915 LOC100268087 LOC100263460 LOC7463733 LOC7462286 LOC7453892 LOC11434036 LOC11414390 LOC11422260 LOC101266027 LOC101247241 LOC101268462 LOC102594846 LOC102597372 LOC102600244 LOC107762435 LOC107778577 LOC107787916 LOC9268632 LOC4328790 LOC4340886 LOC100280371 LOC100274689 LOC123086936 LOC123091042 LOC123137056 LOC123447712 LOC123404828 LOC123410067 LOC8056755 LOC8061974 LOC8085547 LOC100827786 LOC100844248 LOC100823067 CHLRE_10g433750v5
Function* poly(A) polymerase 1 poly(A) polymerase 2 nuclear poly(a) polymerase nuclear poly(A) polymerase 1 nuclear poly(A) polymerase 4 nuclear poly(A) polymerase 2 nuclear poly(A) polymerase 4 nuclear poly(A) polymerase 1 nuclear poly(A) polymerase 1 nuclear poly(A) polymerase 4 nuclear poly(A) polymerase 4 nuclear poly(A) polymerase 1-like nuclear poly(A) polymerase 4-like nuclear poly(A) polymerase 4-like nuclear poly(A) polymerase 4 nuclear poly(A) polymerase 4 nuclear poly(A) polymerase 1 nuclear poly(A) polymerase 1 nuclear poly(A) polymerase 4 nuclear poly(A) polymerase 4 nuclear poly(A) polymerase 4 nuclear poly(A) polymerase 1 nuclear poly(A) polymerase 4 nuclear poly(A) polymerase 1 nuclear poly(A) polymerase 1 nuclear poly(A) polymerase 1 nuclear poly(A) polymerase 4-like nuclear poly(A) polymerase 4 nuclear poly(A) polymerase 1 nuclear poly(A) polymerase 4 nuclear poly(A) polymerase 4-like nuclear poly(A) polymerase 1 nuclear poly(A) polymerase 4-like nuclear poly(A) polymerase 4 nuclear poly(A) polymerase 4 nuclear poly(A) polymerase 4 nuclear poly(A) polymerase 1 Nuclear poly(A) polymerase 2 uncharacterized LOC100274689 nuclear poly(A) polymerase 1 nuclear poly(A) polymerase 1 nuclear poly(A) polymerase 4 nuclear poly(A) polymerase 1-like nuclear poly(A) polymerase 4-like nuclear poly(A) polymerase 4-like nuclear poly(A) polymerase 1 nuclear poly(A) polymerase 4 nuclear poly(A) polymerase 4 nuclear poly(A) polymerase 1 nuclear poly(A) polymerase 4 nuclear poly(A) polymerase 4 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 3
ath04626 Plant-pathogen interaction 2
ath03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 3
ath03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03015 mRNA surveillance pathway 3
bra03083 Polycomb repressive complex 2
bra03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 3
bra03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 5
bna03015 mRNA surveillance pathway 4
bna04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03015 mRNA surveillance pathway 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03015 mRNA surveillance pathway 7
ghi00730 Thiamine metabolism 2
ghi00900 Terpenoid backbone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03015 mRNA surveillance pathway 7
ghi00730 Thiamine metabolism 2
ghi00900 Terpenoid backbone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03015 mRNA surveillance pathway 2
cit03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03015 mRNA surveillance pathway 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 2
gma03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03015 mRNA surveillance pathway 2
vvi03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03015 mRNA surveillance pathway 2
ppo03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03040 Spliceosome 9
mtr03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03013 Nucleocytoplasmic transport 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04136 Autophagy - other 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 4
sly03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03018 RNA degradation 2
sly03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04120 Ubiquitin mediated proteolysis 2
sot04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04144 Endocytosis 2
sot03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03015 mRNA surveillance pathway 4
nta03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03015 mRNA surveillance pathway 5
zma03013 Nucleocytoplasmic transport 3
zma03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04141 Protein processing in endoplasmic reticulum 3
tae03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03013 Nucleocytoplasmic transport 4
sbi03015 mRNA surveillance pathway 3
sbi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03013 Nucleocytoplasmic transport 3
bdi03015 mRNA surveillance pathway 2
bdi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03040 Spliceosome 4
bdi03015 mRNA surveillance pathway 2
bdi02010 ABC transporters 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre04141 Protein processing in endoplasmic reticulum 8
cre03040 Spliceosome 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 838378 817127 829421 103835928 103850374 103864694 106365247 106369039 107898378 107951394 107891713 102622420 102621281 102613009 100798218 100802620 100816915 100268087 100263460 7463733 7462286 7453892 11434036 11414390 11422260 101266027 101247241 101268462 102594846 102597372 102600244 107762435 107778577 107787916 9268632 4328790 4340886 100280371 100274689 123086936 123091042 123137056 123447712 123404828 123410067 8056755 8061974 8085547 100827786 100844248 100823067 5728026
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