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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.9   SPI   BEACH-DOMAIN HOMOLOG A1 
 ath-u.5   SPI   BEACH-DOMAIN HOMOLOG A1 
 ath-r.7   SPI   BEACH-DOMAIN HOMOLOG A1 
 ath-e.2   SPI   BEACH-DOMAIN HOMOLOG A1 
 ath-m.4.bio   SPI   BEACH-DOMAIN HOMOLOG A1 
 ath-m.4.hor   SPI   BEACH-DOMAIN HOMOLOG A1 
 ath-m.4.lig   SPI   BEACH-DOMAIN HOMOLOG A1 
 ath-m.4.str   SPI   BEACH-DOMAIN HOMOLOG A1 
 ath-m.4.tis   SPI   BEACH-DOMAIN HOMOLOG A1 
 ath-u.5   AT4G02660   Beige/BEACH and WD40 domain-containing protein 
 bra-r.6   103858751   BEACH domain-containing protein A2 
 bra-r.6   103844534   protein SPIRRIG 
 bra-r.6   103843709   protein SPIRRIG 
 bna-r.1   111201409   protein SPIRRIG 
 bna-r.1   106438686   BEACH domain-containing protein A2-like 
 bna-r.1   106388598   BEACH domain-containing protein A2 
 ghi-r.1   107923613   protein SPIRRIG 
 ghi-r.1   107961023   protein SPIRRIG 
 ghi-r.1   107940230   protein SPIRRIG 
 cit-r.1   102618053   protein SPIRRIG 
 gma-u.5   100793711   protein SPIRRIG 
 gma-u.5   100784514   protein SPIRRIG 
 vvi-u.5   100264735   protein SPIRRIG 
 ppo-u.5   18099653   protein SPIRRIG 
 ppo-u.5   18096150   protein SPIRRIG 
 mtr-u.5   11431269   protein SPIRRIG 
 sly-u.5   101267054   protein SPIRRIG 
 sot-r.1   102603400   protein SPIRRIG 
 nta-r.1   107759541   protein SPIRRIG-like 
 nta-r.1   107815976   protein SPIRRIG-like 
 osa-u.5   9267157   protein SPIRRIG 
 zma-u.5   100381565   uncharacterized LOC100381565 
 tae-r.2   123122794   protein SPIRRIG 
 tae-r.2   123113282   protein SPIRRIG 
 tae-r.2   123104991   protein SPIRRIG 
 hvu-r.1   123452184   protein SPIRRIG 
 sbi-r.1   8085954   protein SPIRRIG 
 bdi-r.1   100830980   protein SPIRRIG 
 bdi-r.1   100827833   MICAL-like protein 1 

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Top 50 coexpressed genes to SPI (ath-m.9 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to SPI (ath-m.9 coexpression data)

CoexMap"839323"


athSPI | Entrez gene ID : 839323      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 10 3 3 3 1 2 1 2 1 1 1 2 1 1 3 1 1 2 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:1902892 [list] [network] positive regulation of root hair elongation  (1 genes)  IMP  
GO:1904580 [list] [network] regulation of intracellular mRNA localization  (1 genes)  IMP  
GO:0033962 [list] [network] P-body assembly  (2 genes)  IMP  
GO:1903335 [list] [network] regulation of vacuolar transport  (2 genes)  IGI  
GO:0080001 [list] [network] mucilage extrusion from seed coat  (14 genes)  IGI  
GO:0071472 [list] [network] cellular response to salt stress  (42 genes)  IMP  
GO:0009825 [list] [network] multidimensional cell growth  (43 genes)  IMP  
GO:0007033 [list] [network] vacuole organization  (45 genes)  IMP  
GO:0010090 [list] [network] trichome morphogenesis  (66 genes)  IMP  
GO CC
GO:0035619 [list] [network] root hair tip  (9 genes)  IDA  
GO:0000932 [list] [network] P-body  (34 genes)  IDA  
GO:0005768 [list] [network] endosome  (359 genes)  IPI  
GO:0005634 [list] [network] nucleus  (10367 genes)  ISM  
GO:0005737 [list] [network] cytoplasm  (14000 genes)  IDA  
GO MF
GO:0005515 [list] [network] protein binding  (5363 genes)  IPI  
Protein NP_001322128.1 [sequence] [blastp]
NP_001322129.1 [sequence] [blastp]
NP_001322130.1 [sequence] [blastp]
NP_171805.1 [sequence] [blastp]
Subcellular
localization
wolf
plas 6,  nucl 3,  golg_plas 3,  cysk_plas 3,  cyto_plas 3  (predict for NP_001322128.1)
plas 6,  nucl 3,  golg_plas 3,  cysk_plas 3,  cyto_plas 3  (predict for NP_001322129.1)
plas 6,  nucl 3,  golg_plas 3,  cysk_plas 3,  cyto_plas 3  (predict for NP_001322130.1)
plas 6,  nucl 3,  golg_plas 3,  cysk_plas 3,  cyto_plas 3  (predict for NP_171805.1)
Subcellular
localization
TargetP
chlo 6  (predict for NP_001322128.1)
chlo 6  (predict for NP_001322129.1)
chlo 7  (predict for NP_001322130.1)
chlo 7  (predict for NP_171805.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.9
for
SPI
ath-u.5
for
SPI
ath-r.7
for
SPI
ath-e.2
for
SPI
ath-m.4.bio
for
SPI
ath-m.4.hor
for
SPI
ath-m.4.lig
for
SPI
ath-m.4.str
for
SPI
ath-m.4.tis
for
SPI
ath-u.5
for
AT4G02660
bra-r.6
for
103858751
bra-r.6
for
103844534
bra-r.6
for
103843709
bna-r.1
for
111201409
bna-r.1
for
106438686
bna-r.1
for
106388598
ghi-r.1
for
107923613
ghi-r.1
for
107961023
ghi-r.1
for
107940230
cit-r.1
for
102618053
gma-u.5
for
100793711
gma-u.5
for
100784514
vvi-u.5
for
100264735
ppo-u.5
for
18099653
ppo-u.5
for
18096150
mtr-u.5
for
11431269
sly-u.5
for
101267054
sot-r.1
for
102603400
nta-r.1
for
107759541
nta-r.1
for
107815976
osa-u.5
for
9267157
zma-u.5
for
100381565
tae-r.2
for
123122794
tae-r.2
for
123113282
tae-r.2
for
123104991
hvu-r.1
for
123452184
sbi-r.1
for
8085954
bdi-r.1
for
100830980
bdi-r.1
for
100827833


Ortholog ID: 5804
Species ath ath bra bra bra bna bna bna ghi ghi ghi cit gma gma vvi ppo ppo mtr sly sot nta nta osa zma tae tae tae hvu sbi bdi bdi
Symbol SPI AT4G02660 LOC103858751 LOC103844534 LOC103843709 LOC106438686 LOC106388598 LOC106369283 LOC107923613 LOC107940230 LOC107923612 LOC102618053 LOC100793711 LOC100784514 LOC100264735 LOC18099653 LOC18096150 LOC11431269 LOC101267054 LOC102603400 LOC107759541 LOC107815976 LOC9267157 LOC100381565 LOC123122794 LOC123113282 LOC123104991 LOC123452184 LOC8085954 LOC100830980 LOC100827833
Function* BEACH-DOMAIN HOMOLOG A1 Beige/BEACH and WD40 domain-containing protein BEACH domain-containing protein A2 protein SPIRRIG protein SPIRRIG BEACH domain-containing protein A2-like BEACH domain-containing protein A2 protein SPIRRIG protein SPIRRIG protein SPIRRIG protein SPIRRIG protein SPIRRIG protein SPIRRIG protein SPIRRIG protein SPIRRIG protein SPIRRIG protein SPIRRIG protein SPIRRIG protein SPIRRIG protein SPIRRIG protein SPIRRIG-like protein SPIRRIG-like protein SPIRRIG uncharacterized LOC100381565 protein SPIRRIG protein SPIRRIG protein SPIRRIG protein SPIRRIG protein SPIRRIG protein SPIRRIG MICAL-like protein 1
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04120 Ubiquitin mediated proteolysis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04814 Motor proteins 2
ath03013 Nucleocytoplasmic transport 2
ath03460 Fanconi anemia pathway 2
ath03082 ATP-dependent chromatin remodeling 2
ath03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04141 Protein processing in endoplasmic reticulum 3
bra00510 N-Glycan biosynthesis 2
bra00513 Various types of N-glycan biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04142 Lysosome 2
bra04144 Endocytosis 2
bra04148 Efferocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00310 Lysine degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04814 Motor proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04814 Motor proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04814 Motor proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04142 Lysosome 4
cit04144 Endocytosis 3
cit00562 Inositol phosphate metabolism 2
cit04070 Phosphatidylinositol signaling system 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04120 Ubiquitin mediated proteolysis 3
gma00562 Inositol phosphate metabolism 2
gma04070 Phosphatidylinositol signaling system 2
gma04145 Phagosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04120 Ubiquitin mediated proteolysis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04120 Ubiquitin mediated proteolysis 2
ppo00562 Inositol phosphate metabolism 2
ppo04070 Phosphatidylinositol signaling system 2
ppo04142 Lysosome 2
ppo04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04120 Ubiquitin mediated proteolysis 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04120 Ubiquitin mediated proteolysis 3
sly03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04120 Ubiquitin mediated proteolysis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04144 Endocytosis 2
nta04517 IgSF CAM signaling 2
nta05100 Bacterial invasion of epithelial cells 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04144 Endocytosis 2
nta04517 IgSF CAM signaling 2
nta05100 Bacterial invasion of epithelial cells 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04814 Motor proteins 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04120 Ubiquitin mediated proteolysis 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04120 Ubiquitin mediated proteolysis 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04120 Ubiquitin mediated proteolysis 5
tae00562 Inositol phosphate metabolism 3
tae04070 Phosphatidylinositol signaling system 3
tae04145 Phagosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04120 Ubiquitin mediated proteolysis 2
bdi03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04144 Endocytosis 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 839323 828210 103858751 103844534 103843709 106438686 106388598 106369283 107923613 107940230 107923612 102618053 100793711 100784514 100264735 18099653 18096150 11431269 101267054 102603400 107759541 107815976 9267157 100381565 123122794 123113282 123104991 123452184 8085954 100830980 100827833
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