ATTED-II : GeneCoexpression result

Species	Gene	Description
ath-m.9	TPR3	Tetratricopeptide repeat (TPR)-like superfamily protein
ath-u.5	TPR3	Tetratricopeptide repeat (TPR)-like superfamily protein
ath-r.7	TPR3	Tetratricopeptide repeat (TPR)-like superfamily protein
ath-e.2	TPR3	Tetratricopeptide repeat (TPR)-like superfamily protein
ath-m.4.bio	TPR3	Tetratricopeptide repeat (TPR)-like superfamily protein
ath-m.4.hor	TPR3	Tetratricopeptide repeat (TPR)-like superfamily protein
ath-m.4.lig	TPR3	Tetratricopeptide repeat (TPR)-like superfamily protein
ath-m.4.str	TPR3	Tetratricopeptide repeat (TPR)-like superfamily protein
ath-m.4.tis	TPR3	Tetratricopeptide repeat (TPR)-like superfamily protein
bra-r.6	103836589	stress-induced-phosphoprotein 1
bna-r.1	125577215	serine/threonine-protein phosphatase 5-like
bna-r.1	106401255	stress-induced-phosphoprotein 1
bna-r.1	125594482	serine/threonine-protein phosphatase 5-like
ghi-r.1	121232231	stress-induced-phosphoprotein 1
ghi-r.1	107933098	stress-induced-phosphoprotein 1
cit-r.1	102622720	uncharacterized LOC102622720
gma-u.5	100790717	tetratricopeptide repeat-containing protein
gma-u.5	100775252	RNA polymerase II-associated protein 3
vvi-u.5	100266608	uncharacterized LOC100266608
ppo-u.5	7474177	U-box domain-containing protein 70
ppo-u.5	7473424	serine/threonine-protein phosphatase T
mtr-u.5	25482962	U-box domain-containing protein 70
sly-u.5	101253624	uncharacterized LOC101253624
sot-r.1	102592737	stress-induced-phosphoprotein 1
nta-r.1	107828430	uncharacterized LOC107828430
nta-r.1	107811895	uncharacterized LOC107811895
osa-u.5	4352735	uncharacterized LOC4352735
zma-u.5	100194143	uncharacterized LOC100194143
tae-r.2	123102281	tetratricopeptide repeat protein 1
tae-r.2	123110460	serine/threonine-protein phosphatase 5
tae-r.2	123119463	RNA polymerase II-associated protein 3
hvu-r.1	123398822	RNA polymerase II-associated protein 3
hvu-r.1	123439753	uncharacterized LOC123439753
sbi-r.1	8076661	stress-induced-phosphoprotein 1
bdi-r.1	100845023	stress-induced-phosphoprotein 1
cre-r.1	CHLRE_02g106850v5	uncharacterized protein

Annotation

functional annotation

KEGG

GO BP

GO CC

GO:0005634 [list] [network] nucleus

(10367 genes)

ISM

GO MF

Protein

NP_171915.1 [sequence] [blastp]

Subcellular
localization
wolf

mito 5, nucl 3, nucl_plas 2, plas 1

(predict for NP_171915.1)

Subcellular
localization
TargetP

other 9

(predict for NP_171915.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target				Condition-specific^*					Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ath-m.9 for TPR3	ath-u.5 for TPR3	ath-r.7 for TPR3	ath-e.2 for TPR3	ath-m.4.bio for TPR3	ath-m.4.hor for TPR3	ath-m.4.lig for TPR3	ath-m.4.str for TPR3	ath-m.4.tis for TPR3	bra-r.6 for 103836589	bna-r.1 for 125577215	bna-r.1 for 106401255	bna-r.1 for 125594482	ghi-r.1 for 121232231	ghi-r.1 for 107933098	cit-r.1 for 102622720	gma-u.5 for 100790717	gma-u.5 for 100775252	vvi-u.5 for 100266608	ppo-u.5 for 7474177	ppo-u.5 for 7473424	mtr-u.5 for 25482962	sly-u.5 for 101253624	sot-r.1 for 102592737	nta-r.1 for 107828430	nta-r.1 for 107811895	osa-u.5 for 4352735	zma-u.5 for 100194143	tae-r.2 for 123102281	tae-r.2 for 123110460	tae-r.2 for 123119463	hvu-r.1 for 123398822	hvu-r.1 for 123439753	sbi-r.1 for 8076661	bdi-r.1 for 100845023	cre-r.1 for CHLRE_02g106850v5

Ortholog

Ortholog ID: 8715

Species

ath

bra

bna

ghi

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

TPR3

Function^*

Tetratricopeptide repeat (TPR)-like superfamily protein

stress-induced-phosphoprotein 1

serine/threonine-protein phosphatase 5-like

stress-induced-phosphoprotein 1

serine/threonine-protein phosphatase 5-like

stress-induced-phosphoprotein 1

uncharacterized LOC102622720

tetratricopeptide repeat-containing protein

RNA polymerase II-associated protein 3

uncharacterized LOC100266608

U-box domain-containing protein 70

serine/threonine-protein phosphatase T

U-box domain-containing protein 70

uncharacterized LOC101253624

stress-induced-phosphoprotein 1

uncharacterized LOC107828430

uncharacterized LOC107811895

uncharacterized LOC4352735

uncharacterized LOC100194143

tetratricopeptide repeat protein 1

serine/threonine-protein phosphatase 5

RNA polymerase II-associated protein 3

uncharacterized LOC123439753

stress-induced-phosphoprotein 1

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03010	Ribosome	2
ath03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03010	Ribosome	3
bra03013	Nucleocytoplasmic transport	2
bra03008	Ribosome biogenesis in eukaryotes	2
bra00230	Purine metabolism	2
bra01232	Nucleotide metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03050	Proteasome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03050	Proteasome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03050	Proteasome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03050	Proteasome	6
ghi03020	RNA polymerase	3
ghi03420	Nucleotide excision repair	3
ghi04075	Plant hormone signal transduction	2
ghi00600	Sphingolipid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03050	Proteasome	6
ghi03020	RNA polymerase	3
ghi03420	Nucleotide excision repair	3
ghi04075	Plant hormone signal transduction	2
ghi00600	Sphingolipid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit00030	Pentose phosphate pathway	2
cit00190	Oxidative phosphorylation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03040	Spliceosome	3
gma04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03008	Ribosome biogenesis in eukaryotes	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03010	Ribosome	15

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03010	Ribosome	3
ppo03015	mRNA surveillance pathway	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03010	Ribosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03010	Ribosome	5
mtr03008	Ribosome biogenesis in eukaryotes	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00010	Glycolysis / Gluconeogenesis	2
nta00030	Pentose phosphate pathway	2
nta00051	Fructose and mannose metabolism	2
nta04141	Protein processing in endoplasmic reticulum	2
nta00970	Aminoacyl-tRNA biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00010	Glycolysis / Gluconeogenesis	2
nta00030	Pentose phosphate pathway	2
nta00051	Fructose and mannose metabolism	2
nta00563	Glycosylphosphatidylinositol (GPI)-anchor biosynthesis	2
nta04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03010	Ribosome	13

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03010	Ribosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03008	Ribosome biogenesis in eukaryotes	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03008	Ribosome biogenesis in eukaryotes	7

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03008	Ribosome biogenesis in eukaryotes	7

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu00970	Aminoacyl-tRNA biosynthesis	3
hvu03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03008	Ribosome biogenesis in eukaryotes	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03008	Ribosome biogenesis in eukaryotes	3
bdi03018	RNA degradation	2
bdi00970	Aminoacyl-tRNA biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre03082	ATP-dependent chromatin remodeling	2

Expression

Expression pattern

Entrez Gene ID^*

839442

103836589

125577215

106401255

125594482

121232231

107933098

102622720

100790717

100775252

100266608

7474177

7473424

25482962

101253624

102592737

107828430

107811895

4352735

100194143

123102281

123110460

123119463

123398822

123439753

8076661

100845023

5725295

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to TPR3 (ath-m.9 coexpression data)

Top 50 enrichment test to TPR3 (ath-m.9 coexpression data)


Species	ath	bra	bna	ghi	cit	gma	vvi	ppo	mtr	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	9	1	3	2	1	2	1	2	1	1	1	2	1	1	3	2	1	1	1

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to TPR3 (ath-m.9 coexpression data)

Top 50 enrichment test to TPR3 (ath-m.9 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**