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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.9   AT1G04590   PPR containing-like protein 
 ath-u.5   AT1G04590   PPR containing-like protein 
 ath-r.7   AT1G04590   PPR containing-like protein 
 ath-e.2   AT1G04590   PPR containing-like protein 
 ath-m.4.bio   AT1G04590   PPR containing-like protein 
 ath-m.4.hor   AT1G04590   PPR containing-like protein 
 ath-m.4.lig   AT1G04590   PPR containing-like protein 
 ath-m.4.str   AT1G04590   PPR containing-like protein 
 ath-m.4.tis   AT1G04590   PPR containing-like protein 
 bra-r.6   103844239   pentatricopeptide repeat-containing protein At4g21190 
 bra-r.6   103843643   pentatricopeptide repeat-containing protein At4g21190 
 bna-r.1   106369238   pentatricopeptide repeat-containing protein At4g21190 
 bna-r.1   106370999   pentatricopeptide repeat-containing protein At4g21190 
 bna-r.1   106402950   pentatricopeptide repeat-containing protein At4g21190-like 
 ghi-r.1   107888489   pentatricopeptide repeat-containing protein At4g18975, chloroplastic 
 cit-r.1   102629182   pentatricopeptide repeat-containing protein At4g18975, chloroplastic 
 gma-u.5   100795658   pentatricopeptide repeat-containing protein At4g18975, chloroplastic-like 
 vvi-u.5   100261749   pentatricopeptide repeat-containing protein At4g18975, chloroplastic 
 ppo-u.5   7486528   pentatricopeptide repeat-containing protein At4g21190 
 ppo-u.5   7454958   pentatricopeptide repeat-containing protein At4g21190 
 mtr-u.5   11443120   pentatricopeptide repeat-containing protein At4g18975, chloroplastic 
 sly-u.5   101255983   uncharacterized LOC101255983 
 sot-r.1   102581648   pentatricopeptide repeat-containing protein At4g21190 
 nta-r.1   107786659   pentatricopeptide repeat-containing protein At4g18975, chloroplastic 
 nta-r.1   107821726   pentatricopeptide repeat-containing protein At4g21190-like 
 osa-u.5   4349641   pentatricopeptide repeat-containing protein At4g18975, chloroplastic 
 osa-u.5   4351365   pentatricopeptide repeat-containing protein At4g18975, chloroplastic 
 zma-u.5   100273688   uncharacterized LOC100273688 
 tae-r.2   123096527   pentatricopeptide repeat-containing protein At4g18975, chloroplastic 
 tae-r.2   123091573   pentatricopeptide repeat-containing protein At4g18975, chloroplastic 
 tae-r.2   123086423   pentatricopeptide repeat-containing protein At4g18975, chloroplastic 
 hvu-r.1   123448105   pentatricopeptide repeat-containing protein At4g18975, chloroplastic 
 sbi-r.1   8067146   pentatricopeptide repeat-containing protein At4g18975, chloroplastic 
 bdi-r.1   100827608   pentatricopeptide repeat-containing protein At4g18975, chloroplastic 

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Top 50 coexpressed genes to AT1G04590 (ath-m.9 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to AT1G04590 (ath-m.9 coexpression data)

CoexMap"839484"


athAT1G04590 | Entrez gene ID : 839484      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 9 2 3 1 1 1 1 2 1 1 1 2 2 1 3 1 1 1 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO:0009507 [list] [network] chloroplast  (5014 genes)  ISM  
GO MF
Protein NP_563712.1 [sequence] [blastp]
NP_849590.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 6,  mito 3  (predict for NP_563712.1)
chlo 7,  mito 3  (predict for NP_849590.1)
Subcellular
localization
TargetP
mito 6  (predict for NP_563712.1)
mito 6  (predict for NP_849590.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.9
for
AT1G04590
ath-u.5
for
AT1G04590
ath-r.7
for
AT1G04590
ath-e.2
for
AT1G04590
ath-m.4.bio
for
AT1G04590
ath-m.4.hor
for
AT1G04590
ath-m.4.lig
for
AT1G04590
ath-m.4.str
for
AT1G04590
ath-m.4.tis
for
AT1G04590
bra-r.6
for
103844239
bra-r.6
for
103843643
bna-r.1
for
106369238
bna-r.1
for
106370999
bna-r.1
for
106402950
ghi-r.1
for
107888489
cit-r.1
for
102629182
gma-u.5
for
100795658
vvi-u.5
for
100261749
ppo-u.5
for
7486528
ppo-u.5
for
7454958
mtr-u.5
for
11443120
sly-u.5
for
101255983
sot-r.1
for
102581648
nta-r.1
for
107786659
nta-r.1
for
107821726
osa-u.5
for
4349641
osa-u.5
for
4351365
zma-u.5
for
100273688
tae-r.2
for
123096527
tae-r.2
for
123091573
tae-r.2
for
123086423
hvu-r.1
for
123448105
sbi-r.1
for
8067146
bdi-r.1
for
100827608


Ortholog ID: 9235
Species ath bra bra bna bna bna ghi cit gma vvi ppo ppo mtr sly sot nta nta osa osa zma tae tae tae hvu sbi bdi
Symbol AT1G04590 LOC103844239 LOC103843643 LOC106369238 LOC106370999 LOC106402950 LOC107888489 LOC102629182 LOC100795658 LOC100261749 LOC7486528 LOC7454958 LOC11443120 LOC101255983 LOC102581648 LOC107786659 LOC107821726 LOC4349641 LOC4351365 LOC100273688 LOC123096527 LOC123091573 LOC123086423 LOC123448105 LOC8067146 LOC100827608
Function* PPR containing-like protein pentatricopeptide repeat-containing protein At4g21190 pentatricopeptide repeat-containing protein At4g21190 pentatricopeptide repeat-containing protein At4g21190 pentatricopeptide repeat-containing protein At4g21190 pentatricopeptide repeat-containing protein At4g21190-like pentatricopeptide repeat-containing protein At4g18975, chloroplastic pentatricopeptide repeat-containing protein At4g18975, chloroplastic pentatricopeptide repeat-containing protein At4g18975, chloroplastic-like pentatricopeptide repeat-containing protein At4g18975, chloroplastic pentatricopeptide repeat-containing protein At4g21190 pentatricopeptide repeat-containing protein At4g21190 pentatricopeptide repeat-containing protein At4g18975, chloroplastic uncharacterized LOC101255983 pentatricopeptide repeat-containing protein At4g21190 pentatricopeptide repeat-containing protein At4g18975, chloroplastic pentatricopeptide repeat-containing protein At4g21190-like pentatricopeptide repeat-containing protein At4g18975, chloroplastic pentatricopeptide repeat-containing protein At4g18975, chloroplastic uncharacterized LOC100273688 pentatricopeptide repeat-containing protein At4g18975, chloroplastic pentatricopeptide repeat-containing protein At4g18975, chloroplastic pentatricopeptide repeat-containing protein At4g18975, chloroplastic pentatricopeptide repeat-containing protein At4g18975, chloroplastic pentatricopeptide repeat-containing protein At4g18975, chloroplastic pentatricopeptide repeat-containing protein At4g18975, chloroplastic
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03020 RNA polymerase 3
ath03420 Nucleotide excision repair 3
ath03040 Spliceosome 2
ath04146 Peroxisome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03018 RNA degradation 3
bra03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03008 Ribosome biogenesis in eukaryotes 2
gma03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03008 Ribosome biogenesis in eukaryotes 4
vvi03050 Proteasome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 5
ppo03013 Nucleocytoplasmic transport 2
ppo03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03013 Nucleocytoplasmic transport 2
ppo04120 Ubiquitin mediated proteolysis 2
ppo03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 3
tae04120 Ubiquitin mediated proteolysis 2
tae03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04144 Endocytosis 2
tae03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00970 Aminoacyl-tRNA biosynthesis 4
sbi03050 Proteasome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03008 Ribosome biogenesis in eukaryotes 2
bdi03410 Base excision repair 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 839484 103844239 103843643 106369238 106370999 106402950 107888489 102629182 100795658 100261749 7486528 7454958 11443120 101255983 102581648 107786659 107821726 4349641 4351365 100273688 123096527 123091573 123086423 123448105 8067146 100827608
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