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Orthologous genes in OrthoFinder**

Species Gene Description
 ghi-r.1   107888489   pentatricopeptide repeat-containing protein At4g18975, chloroplastic 
 ath-u.5   AT1G04590   PPR containing-like protein 
 gma-u.5   100795658   pentatricopeptide repeat-containing protein At4g18975, chloroplastic-like 
 vvi-u.5   100261749   pentatricopeptide repeat-containing protein At4g18975, chloroplastic 
 ppo-u.5   7486528   pentatricopeptide repeat-containing protein At4g21190 
 ppo-u.5   7454958   pentatricopeptide repeat-containing protein At4g21190 
 mtr-u.5   11443120   pentatricopeptide repeat-containing protein At4g18975, chloroplastic 
 sly-u.5   101255983   uncharacterized LOC101255983 
 osa-u.5   4349641   pentatricopeptide repeat-containing protein At4g18975, chloroplastic 
 osa-u.5   4351365   pentatricopeptide repeat-containing protein At4g18975, chloroplastic 
 zma-u.5   100273688   uncharacterized LOC100273688 

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Top 50 coexpressed genes to 107888489 (ghi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 107888489 (ghi-r.1 coexpression data)

CoexMap"107888489"


ghiLOC107888489 | Entrez gene ID : 107888489    
Species ghi ath gma vvi ppo mtr sly osa zma bdi hvu bra cit bna sbi sot nta cre tae
Paralog 1 1 1 1 2 1 1 2 1 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO MF
GO:0005515 [list] [network] protein binding  (10797 genes)  IEA  
Protein XP_016668107.1 [sequence] [blastp]
XP_040933521.1 [sequence] [blastp]
Subcellular
localization
wolf
mito 8,  cyto_mito 4,  nucl 1,  cyto 1,  cyto_nucl 1  (predict for XP_016668107.1)
mito 4,  chlo 4,  cyto_mito 3  (predict for XP_040933521.1)
Subcellular
localization
TargetP
mito 8  (predict for XP_016668107.1)
mito 8  (predict for XP_040933521.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ghi-r.1
for
107888489
ath-u.5
for
AT1G04590
gma-u.5
for
100795658
vvi-u.5
for
100261749
ppo-u.5
for
7486528
ppo-u.5
for
7454958
mtr-u.5
for
11443120
sly-u.5
for
101255983
osa-u.5
for
4349641
osa-u.5
for
4351365
zma-u.5
for
100273688


Ortholog ID: 9235
Species ghi ath bra bra bna bna cit gma vvi ppo ppo mtr sly sot nta nta osa osa zma tae tae hvu sbi bdi
Symbol LOC107888489 AT1G04590 LOC103843643 LOC103844239 LOC106402950 LOC106370999 LOC102629182 LOC100795658 LOC100261749 LOC7486528 LOC7454958 LOC11443120 LOC101255983 LOC102581648 LOC107821726 LOC107786659 LOC4351365 LOC4349641 LOC100273688 LOC123086423 LOC123091573 LOC123448105 LOC8067146 LOC100827608
Function* pentatricopeptide repeat-containing protein At4g18975, chloroplastic PPR containing-like protein pentatricopeptide repeat-containing protein At4g21190 pentatricopeptide repeat-containing protein At4g21190 pentatricopeptide repeat-containing protein At4g21190-like pentatricopeptide repeat-containing protein At4g21190 pentatricopeptide repeat-containing protein At4g18975, chloroplastic pentatricopeptide repeat-containing protein At4g18975, chloroplastic-like pentatricopeptide repeat-containing protein At4g18975, chloroplastic pentatricopeptide repeat-containing protein At4g21190 pentatricopeptide repeat-containing protein At4g21190 pentatricopeptide repeat-containing protein At4g18975, chloroplastic uncharacterized LOC101255983 pentatricopeptide repeat-containing protein At4g21190 pentatricopeptide repeat-containing protein At4g21190-like pentatricopeptide repeat-containing protein At4g18975, chloroplastic pentatricopeptide repeat-containing protein At4g18975, chloroplastic pentatricopeptide repeat-containing protein At4g18975, chloroplastic uncharacterized LOC100273688 pentatricopeptide repeat-containing protein At4g18975, chloroplastic pentatricopeptide repeat-containing protein At4g18975, chloroplastic pentatricopeptide repeat-containing protein At4g18975, chloroplastic pentatricopeptide repeat-containing protein At4g18975, chloroplastic pentatricopeptide repeat-containing protein At4g18975, chloroplastic
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03020 RNA polymerase 3
ath03420 Nucleotide excision repair 3
ath03040 Spliceosome 2
ath04146 Peroxisome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03018 RNA degradation 3
bra03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03008 Ribosome biogenesis in eukaryotes 2
gma03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03008 Ribosome biogenesis in eukaryotes 4
vvi03050 Proteasome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 5
ppo03013 Nucleocytoplasmic transport 2
ppo03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03013 Nucleocytoplasmic transport 2
ppo04120 Ubiquitin mediated proteolysis 2
ppo03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04144 Endocytosis 2
tae03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 3
tae04120 Ubiquitin mediated proteolysis 2
tae03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00970 Aminoacyl-tRNA biosynthesis 4
sbi03050 Proteasome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03008 Ribosome biogenesis in eukaryotes 2
bdi03410 Base excision repair 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 107888489 839484 103843643 103844239 106402950 106370999 102629182 100795658 100261749 7486528 7454958 11443120 101255983 102581648 107821726 107786659 4351365 4349641 100273688 123086423 123091573 123448105 8067146 100827608
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