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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.9   SRD2   snRNA activating complex family protein 
 ath-u.5   SRD2   snRNA activating complex family protein 
 ath-r.7   SRD2   snRNA activating complex family protein 
 ath-e.2   SRD2   snRNA activating complex family protein 
 ath-m.4.bio   SRD2   snRNA activating complex family protein 
 ath-m.4.hor   SRD2   snRNA activating complex family protein 
 ath-m.4.lig   SRD2   snRNA activating complex family protein 
 ath-m.4.str   SRD2   snRNA activating complex family protein 
 ath-m.4.tis   SRD2   snRNA activating complex family protein 
 bra-r.6   103835310   snRNA-activating protein complex subunit 
 bna-r.1   106361672   snRNA-activating protein complex subunit-like 
 bna-r.1   106389633   snRNA-activating protein complex subunit 
 ghi-r.1   107903963   snRNA-activating protein complex subunit 
 ghi-r.1   107956983   snRNA-activating protein complex subunit 
 cit-r.1   102627990   snRNA-activating protein complex subunit 
 gma-u.5   100802470   snRNA-activating protein complex subunit 
 vvi-u.5   100854109   snRNA-activating protein complex subunit 
 ppo-u.5   7474040   snRNA-activating protein complex subunit 
 mtr-u.5   25494348   snRNA-activating protein complex subunit 
 mtr-u.5   25483006   snRNA-activating protein complex subunit 
 mtr-u.5   25501133   snRNA-activating protein complex subunit 
 sly-u.5   101248718   snRNA-activating protein complex subunit 
 sot-r.1   102584468   snRNA-activating protein complex subunit 
 nta-r.1   107814064   snRNA-activating protein complex subunit-like 
 nta-r.1   107785074   snRNA-activating protein complex subunit-like 
 osa-u.5   4324317   snRNA-activating protein complex subunit 
 zma-u.5   100275588   uncharacterized LOC100275588 
 tae-r.2   123071913   snRNA-activating protein complex subunit 
 tae-r.2   123063017   snRNA-activating protein complex subunit 
 tae-r.2   123080229   snRNA-activating protein complex subunit 
 hvu-r.1   123445175   snRNA-activating protein complex subunit 
 sbi-r.1   8078716   snRNA-activating protein complex subunit 
 bdi-r.1   100840721   snRNA-activating protein complex subunit 
 cre-r.1   CHLRE_15g636650v5   uncharacterized protein 

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Top 50 coexpressed genes to SRD2 (ath-m.9 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to SRD2 (ath-m.9 coexpression data)

CoexMap"839756"


athSRD2 | Entrez gene ID : 839756      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 9 1 2 2 1 1 1 1 3 1 1 2 1 1 3 1 1 1 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0009301 [list] [network] snRNA transcription  (1 genes)  IMP  
GO:0060184 [list] [network] cell cycle switching  (1 genes)  IMP  
GO:0043697 [list] [network] cell dedifferentiation  (2 genes)  IMP  
GO:0009945 [list] [network] radial axis specification  (3 genes)  IMP  
GO:0009942 [list] [network] longitudinal axis specification  (9 genes)  IMP  
GO:0010014 [list] [network] meristem initiation  (36 genes)  IMP  
GO:0010311 [list] [network] lateral root formation  (61 genes)  IMP  
GO:0009926 [list] [network] auxin polar transport  (72 genes)  IMP  
GO:0071368 [list] [network] cellular response to cytokinin stimulus  (72 genes)  IEP  
GO:0071365 [list] [network] cellular response to auxin stimulus  (93 genes)  IEP  
GO:1905392 [list] [network] plant organ morphogenesis  (480 genes)  IMP  
GO CC
GO:0005634 [list] [network] nucleus  (10367 genes)  IDA ISM  
GO MF
Protein NP_001117373.2 [sequence] [blastp]
NP_001321583.1 [sequence] [blastp]
NP_174178.2 [sequence] [blastp]
Subcellular
localization
wolf
nucl 9  (predict for NP_001117373.2)
nucl 9  (predict for NP_001321583.1)
nucl 8,  cyto 1  (predict for NP_174178.2)
Subcellular
localization
TargetP
other 7  (predict for NP_001117373.2)
other 8  (predict for NP_001321583.1)
other 7  (predict for NP_174178.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.9
for
SRD2
ath-u.5
for
SRD2
ath-r.7
for
SRD2
ath-e.2
for
SRD2
ath-m.4.bio
for
SRD2
ath-m.4.hor
for
SRD2
ath-m.4.lig
for
SRD2
ath-m.4.str
for
SRD2
ath-m.4.tis
for
SRD2
bra-r.6
for
103835310
bna-r.1
for
106361672
bna-r.1
for
106389633
ghi-r.1
for
107903963
ghi-r.1
for
107956983
cit-r.1
for
102627990
gma-u.5
for
100802470
vvi-u.5
for
100854109
ppo-u.5
for
7474040
mtr-u.5
for
25494348
mtr-u.5
for
25483006
mtr-u.5
for
25501133
sly-u.5
for
101248718
sot-r.1
for
102584468
nta-r.1
for
107814064
nta-r.1
for
107785074
osa-u.5
for
4324317
zma-u.5
for
100275588
tae-r.2
for
123071913
tae-r.2
for
123063017
tae-r.2
for
123080229
hvu-r.1
for
123445175
sbi-r.1
for
8078716
bdi-r.1
for
100840721
cre-r.1
for
CHLRE_15g636650v5


Ortholog ID: 9813
Species ath bra bna bna ghi ghi cit gma vvi ppo mtr mtr mtr sly sot nta nta osa zma tae tae tae hvu sbi bdi cre
Symbol SRD2 LOC103835310 LOC106361672 LOC106389633 LOC107903963 LOC107956983 LOC102627990 LOC100802470 LOC100854109 LOC7474040 LOC25494348 LOC25483006 LOC25501133 LOC101248718 LOC102584468 LOC107814064 LOC107785074 LOC4324317 LOC100275588 LOC123071913 LOC123063017 LOC123080229 LOC123445175 LOC8078716 LOC100840721 CHLRE_15g636650v5
Function* snRNA activating complex family protein snRNA-activating protein complex subunit snRNA-activating protein complex subunit-like snRNA-activating protein complex subunit snRNA-activating protein complex subunit snRNA-activating protein complex subunit snRNA-activating protein complex subunit snRNA-activating protein complex subunit snRNA-activating protein complex subunit snRNA-activating protein complex subunit snRNA-activating protein complex subunit snRNA-activating protein complex subunit snRNA-activating protein complex subunit snRNA-activating protein complex subunit snRNA-activating protein complex subunit snRNA-activating protein complex subunit-like snRNA-activating protein complex subunit-like snRNA-activating protein complex subunit uncharacterized LOC100275588 snRNA-activating protein complex subunit snRNA-activating protein complex subunit snRNA-activating protein complex subunit snRNA-activating protein complex subunit snRNA-activating protein complex subunit snRNA-activating protein complex subunit uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04130 SNARE interactions in vesicular transport 6
bna04120 Ubiquitin mediated proteolysis 2
bna00410 beta-Alanine metabolism 2
bna00640 Propanoate metabolism 2
bna04146 Peroxisome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04130 SNARE interactions in vesicular transport 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00511 Other glycan degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00790 Folate biosynthesis 2
mtr01240 Biosynthesis of cofactors 2
mtr04122 Sulfur relay system 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00790 Folate biosynthesis 2
mtr01240 Biosynthesis of cofactors 2
mtr04122 Sulfur relay system 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00790 Folate biosynthesis 2
mtr01240 Biosynthesis of cofactors 2
mtr04122 Sulfur relay system 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04122 Sulfur relay system 2
sot00770 Pantothenate and CoA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04120 Ubiquitin mediated proteolysis 2
nta04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03018 RNA degradation 2
nta00510 N-Glycan biosynthesis 2
nta00513 Various types of N-glycan biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 3
tae03018 RNA degradation 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 839756 103835310 106361672 106389633 107903963 107956983 102627990 100802470 100854109 7474040 25494348 25483006 25501133 101248718 102584468 107814064 107785074 4324317 100275588 123071913 123063017 123080229 123445175 8078716 100840721 5726184
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