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Orthologous genes in OrthoFinder**

Species Gene Description
 mtr-u.5   25494348   snRNA-activating protein complex subunit 
 mtr-r.5   25494348   snRNA-activating protein complex subunit 
 mtr-u.5   25483006   snRNA-activating protein complex subunit 
 mtr-u.5   25501133   snRNA-activating protein complex subunit 
 gma-u.5   100802470   snRNA-activating protein complex subunit 
 ppo-u.5   7474040   snRNA-activating protein complex subunit 
 ath-u.5   SRD2   snRNA activating complex family protein 
 vvi-u.5   100854109   snRNA-activating protein complex subunit 
 sly-u.5   101248718   snRNA-activating protein complex subunit 
 osa-u.5   4324317   snRNA-activating protein complex subunit 
 zma-u.5   100275588   uncharacterized LOC100275588 

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Top 50 coexpressed genes to 25494348 (mtr-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 25494348 (mtr-u.5 coexpression data)

CoexMap"25494348"


mtrLOC25494348 | Entrez gene ID : 25494348      
Species mtr gma ppo ath vvi sly osa zma sbi nta bra cre hvu cit bdi sot tae bna ghi
Paralog 4 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0042795 [list] [network] snRNA transcription by RNA polymerase II  (7 genes)  IEA  
GO:0042796 [list] [network] snRNA transcription by RNA polymerase III  (7 genes)  IEA  
GO CC
GO:0019185 [list] [network] snRNA-activating protein complex  (7 genes)  IEA  
GO MF
GO:0003681 [list] [network] bent DNA binding  (3 genes)  IEA  
GO:0001006 [list] [network] RNA polymerase III type 3 promoter sequence-specific DNA binding  (7 genes)  IEA  
GO:0001046 [list] [network] core promoter sequence-specific DNA binding  (10 genes)  IEA  
GO:0000978 [list] [network] RNA polymerase II cis-regulatory region sequence-specific DNA binding  (185 genes)  IEA  
Protein XP_039689552.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 6,  nucl 2,  mito 1,  pero 1  (predict for XP_039689552.1)
Subcellular
localization
TargetP
other 5  (predict for XP_039689552.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

mtr-u.5
for
25494348

.
mtr-r.5
for
25494348

.
mtr-u.5
for
25483006

.
mtr-u.5
for
25501133

.
gma-u.5
for
100802470

.
ppo-u.5
for
7474040

.
ath-u.5
for
SRD2

.
vvi-u.5
for
100854109

.
sly-u.5
for
101248718

.
osa-u.5
for
4324317

.
zma-u.5
for
100275588

.


Ortholog ID: 9813
Species ath gma sly osa zma bra vvi ppo mtr mtr tae tae hvu ghi ghi bna bna cre sbi sot cit bdi nta nta
Symbol SRD2 LOC100802470 LOC101248718 LOC4324317 LOC100275588 LOC103835310 LOC100854109 LOC7474040 LOC25494348 LOC25501133 LOC123080229 LOC123071913 LOC123445175 LOC107903963 LOC107956983 LOC106361672 LOC106389633 CHLRE_15g636650v5 LOC8078716 LOC102584468 LOC102627990 LOC100840721 LOC107785074 LOC107814064
Function* snRNA activating complex family protein snRNA-activating protein complex subunit snRNA-activating protein complex subunit snRNA-activating protein complex subunit uncharacterized LOC100275588 snRNA-activating protein complex subunit snRNA-activating protein complex subunit snRNA-activating protein complex subunit snRNA-activating protein complex subunit snRNA-activating protein complex subunit snRNA-activating protein complex subunit snRNA-activating protein complex subunit snRNA-activating protein complex subunit snRNA-activating protein complex subunit snRNA-activating protein complex subunit snRNA-activating protein complex subunit-like snRNA-activating protein complex subunit uncharacterized protein snRNA-activating protein complex subunit snRNA-activating protein complex subunit snRNA-activating protein complex subunit snRNA-activating protein complex subunit snRNA-activating protein complex subunit-like snRNA-activating protein complex subunit-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00511 Other glycan degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00790 Folate biosynthesis 2
mtr01240 Biosynthesis of cofactors 2
mtr04122 Sulfur relay system 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00790 Folate biosynthesis 2
mtr01240 Biosynthesis of cofactors 2
mtr04122 Sulfur relay system 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 3
tae03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04130 SNARE interactions in vesicular transport 6
bna04120 Ubiquitin mediated proteolysis 2
bna00410 beta-Alanine metabolism 2
bna00640 Propanoate metabolism 2
bna04146 Peroxisome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04130 SNARE interactions in vesicular transport 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04122 Sulfur relay system 2
sot00770 Pantothenate and CoA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03018 RNA degradation 2
nta00510 N-Glycan biosynthesis 2
nta00513 Various types of N-glycan biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04120 Ubiquitin mediated proteolysis 2
nta04141 Protein processing in endoplasmic reticulum 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 839756 100802470 101248718 4324317 100275588 103835310 100854109 7474040 25494348 25501133 123080229 123071913 123445175 107903963 107956983 106361672 106389633 5726184 8078716 102584468 102627990 100840721 107785074 107814064
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