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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.9   FANCM   DEAD/DEAH box RNA helicase family protein 
 ath-u.5   FANCM   DEAD/DEAH box RNA helicase family protein 
 ath-r.7   FANCM   DEAD/DEAH box RNA helicase family protein 
 ath-e.2   FANCM   DEAD/DEAH box RNA helicase family protein 
 ath-m.4.bio   FANCM   DEAD/DEAH box RNA helicase family protein 
 ath-m.4.hor   FANCM   DEAD/DEAH box RNA helicase family protein 
 ath-m.4.lig   FANCM   DEAD/DEAH box RNA helicase family protein 
 ath-m.4.str   FANCM   DEAD/DEAH box RNA helicase family protein 
 ath-m.4.tis   FANCM   DEAD/DEAH box RNA helicase family protein 
 bra-r.6   103868821   DEAD-box ATP-dependent RNA helicase FANCM 
 bna-r.1   106451832   DEAD-box ATP-dependent RNA helicase FANCM 
 bna-r.1   106423789   DEAD-box ATP-dependent RNA helicase FANCM 
 ghi-r.1   107948805   DEAD-box ATP-dependent RNA helicase FANCM 
 ghi-r.1   107895100   DEAD-box ATP-dependent RNA helicase FANCM 
 cit-r.1   102619291   DEAD-box ATP-dependent RNA helicase FANCM 
 gma-u.5   100820078   DEAD-box ATP-dependent RNA helicase FANCM 
 vvi-u.5   100254868   DEAD-box ATP-dependent RNA helicase FANCM 
 ppo-u.5   7494449   DEAD-box ATP-dependent RNA helicase FANCM 
 mtr-u.5   25485169   DEAD-box ATP-dependent RNA helicase FANCM 
 sly-u.5   101256834   DEAD-box ATP-dependent RNA helicase FANCM 
 sot-r.1   102601608   uncharacterized LOC102601608 
 nta-r.1   107824176   DEAD-box ATP-dependent RNA helicase FANCM 
 nta-r.1   107817060   DEAD-box ATP-dependent RNA helicase FANCM 
 osa-u.5   9272231   DEAD-box ATP-dependent RNA helicase FANCM 
 zma-u.5   103654570   DEAD/DEAH box RNA helicase family protein 
 tae-r.2   123091290   DEAD-box ATP-dependent RNA helicase FANCM 
 tae-r.2   123086669   DEAD-box ATP-dependent RNA helicase FANCM 
 tae-r.2   123096268   DEAD-box ATP-dependent RNA helicase FANCM 
 hvu-r.1   123447944   DEAD-box ATP-dependent RNA helicase FANCM 
 sbi-r.1   8079734   DEAD-box ATP-dependent RNA helicase FANCM 
 bdi-r.1   100835661   DEAD-box ATP-dependent RNA helicase FANCM 
 cre-r.1   CHLRE_03g208833v5   uncharacterized protein 

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Top 50 coexpressed genes to FANCM (ath-m.9 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to FANCM (ath-m.9 coexpression data)

CoexMap"840448"


athFANCM | Entrez gene ID : 840448      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 9 1 2 2 1 1 1 1 1 1 1 2 1 1 3 1 1 1 1
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ath03460 [list] [network] Fanconi anemia pathway (46 genes)
GO BP
GO:0045128 [list] [network] negative regulation of reciprocal meiotic recombination  (4 genes)  IGI IMP  
GO:0000724 [list] [network] double-strand break repair via homologous recombination  (43 genes)  IDA IMP  
GO:0051321 [list] [network] meiotic cell cycle  (135 genes)  IMP  
GO CC
GO:0005634 [list] [network] nucleus  (10367 genes)  ISM  
GO MF
Protein NP_001185141.1 [sequence] [blastp]
NP_001319152.1 [sequence] [blastp]
NP_001320963.1 [sequence] [blastp]
NP_001320964.1 [sequence] [blastp]
NP_001320965.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 5,  nucl 3,  cysk 1,  nucl_plas 1  (predict for NP_001185141.1)
cyto 7,  nucl 1,  cysk 1,  cysk_nucl 1  (predict for NP_001319152.1)
cyto 6,  nucl 3,  cyto_pero 3,  cyto_E.R. 3,  cyto_plas 3  (predict for NP_001320963.1)
cyto 6,  nucl 3,  cyto_pero 3,  cyto_E.R. 3,  cyto_plas 3  (predict for NP_001320964.1)
cyto 5,  nucl 3,  cysk 1,  nucl_plas 1  (predict for NP_001320965.1)
Subcellular
localization
TargetP
other 7,  chlo 3  (predict for NP_001185141.1)
other 7,  chlo 3  (predict for NP_001319152.1)
other 7,  chlo 3  (predict for NP_001320963.1)
other 7,  chlo 3  (predict for NP_001320964.1)
other 7,  chlo 3  (predict for NP_001320965.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.9
for
FANCM
ath-u.5
for
FANCM
ath-r.7
for
FANCM
ath-e.2
for
FANCM
ath-m.4.bio
for
FANCM
ath-m.4.hor
for
FANCM
ath-m.4.lig
for
FANCM
ath-m.4.str
for
FANCM
ath-m.4.tis
for
FANCM
bra-r.6
for
103868821
bna-r.1
for
106451832
bna-r.1
for
106423789
ghi-r.1
for
107948805
ghi-r.1
for
107895100
cit-r.1
for
102619291
gma-u.5
for
100820078
vvi-u.5
for
100254868
ppo-u.5
for
7494449
mtr-u.5
for
25485169
sly-u.5
for
101256834
sot-r.1
for
102601608
nta-r.1
for
107824176
nta-r.1
for
107817060
osa-u.5
for
9272231
zma-u.5
for
103654570
tae-r.2
for
123091290
tae-r.2
for
123086669
tae-r.2
for
123096268
hvu-r.1
for
123447944
sbi-r.1
for
8079734
bdi-r.1
for
100835661
cre-r.1
for
CHLRE_03g208833v5


Ortholog ID: 10502
Species ath bra bna bna ghi ghi cit gma vvi ppo mtr sly sot nta nta osa zma tae tae tae hvu sbi bdi cre
Symbol FANCM LOC103868821 LOC106451832 LOC106423789 LOC107948805 LOC107895100 LOC102619291 LOC100820078 LOC100254868 LOC7494449 LOC25485169 LOC101256834 LOC102601608 LOC107824176 LOC107817060 LOC9272231 LOC103654570 LOC123091290 LOC123086669 LOC123096268 LOC123447944 LOC8079734 LOC100835661 CHLRE_03g208833v5
Function* DEAD/DEAH box RNA helicase family protein DEAD-box ATP-dependent RNA helicase FANCM DEAD-box ATP-dependent RNA helicase FANCM DEAD-box ATP-dependent RNA helicase FANCM DEAD-box ATP-dependent RNA helicase FANCM DEAD-box ATP-dependent RNA helicase FANCM DEAD-box ATP-dependent RNA helicase FANCM DEAD-box ATP-dependent RNA helicase FANCM DEAD-box ATP-dependent RNA helicase FANCM DEAD-box ATP-dependent RNA helicase FANCM DEAD-box ATP-dependent RNA helicase FANCM DEAD-box ATP-dependent RNA helicase FANCM uncharacterized LOC102601608 DEAD-box ATP-dependent RNA helicase FANCM DEAD-box ATP-dependent RNA helicase FANCM DEAD-box ATP-dependent RNA helicase FANCM DEAD/DEAH box RNA helicase family protein DEAD-box ATP-dependent RNA helicase FANCM DEAD-box ATP-dependent RNA helicase FANCM DEAD-box ATP-dependent RNA helicase FANCM DEAD-box ATP-dependent RNA helicase FANCM DEAD-box ATP-dependent RNA helicase FANCM DEAD-box ATP-dependent RNA helicase FANCM uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03030 DNA replication 4
ath03460 Fanconi anemia pathway 3
ath03440 Homologous recombination 3
ath03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03460 Fanconi anemia pathway 3
bra03440 Homologous recombination 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03460 Fanconi anemia pathway 2
ghi03018 RNA degradation 2
ghi00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03460 Fanconi anemia pathway 2
ghi03018 RNA degradation 2
ghi00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03460 Fanconi anemia pathway 5
gma03030 DNA replication 4
gma03440 Homologous recombination 3
gma03430 Mismatch repair 3
gma03410 Base excision repair 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03440 Homologous recombination 3
vvi03015 mRNA surveillance pathway 3
vvi03460 Fanconi anemia pathway 2
vvi04814 Motor proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03013 Nucleocytoplasmic transport 5
sly03460 Fanconi anemia pathway 3
sly03430 Mismatch repair 2
sly04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03460 Fanconi anemia pathway 2
sot03430 Mismatch repair 2
sot00270 Cysteine and methionine metabolism 2
sot03440 Homologous recombination 2
sot03030 DNA replication 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04814 Motor proteins 2
nta03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03460 Fanconi anemia pathway 2
nta03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04814 Motor proteins 4
osa03460 Fanconi anemia pathway 3
osa03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03082 ATP-dependent chromatin remodeling 3
zma03013 Nucleocytoplasmic transport 2
zma03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03460 Fanconi anemia pathway 5
tae04814 Motor proteins 4
tae03440 Homologous recombination 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03440 Homologous recombination 6
tae03460 Fanconi anemia pathway 6
tae04814 Motor proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03460 Fanconi anemia pathway 5
tae04814 Motor proteins 3
tae03440 Homologous recombination 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03460 Fanconi anemia pathway 2
sbi03015 mRNA surveillance pathway 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 840448 103868821 106451832 106423789 107948805 107895100 102619291 100820078 100254868 7494449 25485169 101256834 102601608 107824176 107817060 9272231 103654570 123091290 123086669 123096268 123447944 8079734 100835661 5725008
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