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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.9   SPA4   SPA1-related 4 
 ath-u.5   SPA4   SPA1-related 4 
 ath-r.7   SPA4   SPA1-related 4 
 ath-e.2   SPA4   SPA1-related 4 
 ath-m.4.bio   SPA4   SPA1-related 4 
 ath-m.4.hor   SPA4   SPA1-related 4 
 ath-m.4.lig   SPA4   SPA1-related 4 
 ath-m.4.str   SPA4   SPA1-related 4 
 ath-m.4.tis   SPA4   SPA1-related 4 
 ath-u.5   SPA3   SPA1-related 3 
 bra-r.6   103869936   protein SPA1-RELATED 3 
 bra-r.6   103868459   protein SPA1-RELATED 4 
 bra-r.6   103840863   protein SPA1-RELATED 3 
 bna-r.1   106410825   protein SPA1-RELATED 4-like 
 bna-r.1   106405808   protein SPA1-RELATED 3 
 bna-r.1   106349428   protein SPA1-RELATED 3 
 ghi-r.1   107889384   protein SPA1-RELATED 3 
 ghi-r.1   107902594   protein SPA1-RELATED 3 
 ghi-r.1   121223434   protein SPA1-RELATED 3-like 
 cit-r.1   102627009   protein SPA1-RELATED 3 
 gma-u.5   100784064   protein SPA1-RELATED 3 
 gma-u.5   100811457   protein SPA1-RELATED 3 
 gma-u.5   100813635   protein SPA1-RELATED 3 
 vvi-u.5   100258898   protein SPA1-RELATED 3 
 vvi-u.5   100253988   protein SPA1-RELATED 4 
 ppo-u.5   18095578   protein SPA1-RELATED 3 
 ppo-u.5   7460821   protein SPA1-RELATED 3 
 mtr-u.5   11411033   protein SPA1-RELATED 3 
 sly-u.5   101256107   protein SPA1-RELATED 4-like 
 sly-u.5   101249991   protein SPA1-RELATED 4-like 
 sot-r.1   102587101   protein SPA1-RELATED 4-like 
 sot-r.1   102590416   protein SPA1-RELATED 4-like 
 nta-r.1   107759187   protein SPA1-RELATED 3 
 nta-r.1   107768013   protein SPA1-RELATED 4 
 nta-r.1   107827325   protein SPA1-RELATED 3 
 osa-u.5   4324727   protein SPA1-RELATED 4 
 zma-u.5   103636244   protein SPA1-RELATED 4 
 zma-u.5   103651250   protein SPA1-RELATED 4 
 tae-r.2   123079128   protein SPA1-RELATED 3 
 tae-r.2   123062017   protein SPA1-RELATED 4 
 tae-r.2   123070723   protein SPA1-RELATED 3 
 hvu-r.1   123444323   protein SPA1-RELATED 4-like 
 sbi-r.1   8059209   protein SPA1-RELATED 4 
 bdi-r.1   100833269   protein SPA1-RELATED 4 

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Top 50 coexpressed genes to SPA4 (ath-m.9 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to SPA4 (ath-m.9 coexpression data)

CoexMap"841743"


athSPA4 | Entrez gene ID : 841743      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 10 3 3 3 1 3 2 2 1 2 2 3 1 2 3 1 1 1 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ath04712 [list] [network] Circadian rhythm - plant (43 genes)
GO BP
GO:0009640 [list] [network] photomorphogenesis  (77 genes)  IEA  
GO:0009637 [list] [network] response to blue light  (94 genes)  IMP  
GO CC
GO:0080008 [list] [network] Cul4-RING E3 ubiquitin ligase complex  (121 genes)  ISS  
GO:0009507 [list] [network] chloroplast  (5014 genes)  ISM  
GO:0005634 [list] [network] nucleus  (10367 genes)  ISM  
GO MF
GO:0005524 [list] [network] ATP binding  (321 genes)  IEA  
GO:0042802 [list] [network] identical protein binding  (414 genes)  IPI  
GO:0004672 [list] [network] protein kinase activity  (737 genes)  IEA  
GO:0005515 [list] [network] protein binding  (5363 genes)  IPI  
Protein NP_001321532.1 [sequence] [blastp]
NP_001321533.1 [sequence] [blastp]
NP_001321534.1 [sequence] [blastp]
NP_175717.1 [sequence] [blastp]
NP_849802.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 4,  nucl 4,  plas 1,  cysk 1,  cysk_plas 1  (predict for NP_001321532.1)
nucl 3,  chlo 2,  cyto_nucl 2,  cysk_nucl 2,  cyto 1,  cysk 1  (predict for NP_001321533.1)
nucl 6,  plas 1,  golg_plas 1,  chlo 1,  cyto 1,  cysk 1  (predict for NP_001321534.1)
nucl 3,  chlo 2,  cyto_nucl 2,  cysk_nucl 2,  cyto 1,  cysk 1  (predict for NP_175717.1)
nucl 3,  chlo 2,  cyto_nucl 2,  cysk_nucl 2,  cyto 1,  cysk 1  (predict for NP_849802.1)
Subcellular
localization
TargetP
mito 3  (predict for NP_001321532.1)
other 6,  chlo 3  (predict for NP_001321533.1)
other 6,  chlo 3  (predict for NP_001321534.1)
other 6,  chlo 3  (predict for NP_175717.1)
other 6,  chlo 3  (predict for NP_849802.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.9
for
SPA4
ath-u.5
for
SPA4
ath-r.7
for
SPA4
ath-e.2
for
SPA4
ath-m.4.bio
for
SPA4
ath-m.4.hor
for
SPA4
ath-m.4.lig
for
SPA4
ath-m.4.str
for
SPA4
ath-m.4.tis
for
SPA4
ath-u.5
for
SPA3
bra-r.6
for
103869936
bra-r.6
for
103868459
bra-r.6
for
103840863
bna-r.1
for
106410825
bna-r.1
for
106405808
bna-r.1
for
106349428
ghi-r.1
for
107889384
ghi-r.1
for
107902594
ghi-r.1
for
121223434
cit-r.1
for
102627009
gma-u.5
for
100784064
gma-u.5
for
100811457
gma-u.5
for
100813635
vvi-u.5
for
100258898
vvi-u.5
for
100253988
ppo-u.5
for
18095578
ppo-u.5
for
7460821
mtr-u.5
for
11411033
sly-u.5
for
101256107
sly-u.5
for
101249991
sot-r.1
for
102587101
sot-r.1
for
102590416
nta-r.1
for
107759187
nta-r.1
for
107768013
nta-r.1
for
107827325
osa-u.5
for
4324727
zma-u.5
for
103636244
zma-u.5
for
103651250
tae-r.2
for
123079128
tae-r.2
for
123062017
tae-r.2
for
123070723
hvu-r.1
for
123444323
sbi-r.1
for
8059209
bdi-r.1
for
100833269


Ortholog ID: 4906
Species ath ath bra bra bra bna bna bna ghi ghi ghi cit gma gma gma vvi vvi ppo ppo mtr sly sly sot sot nta nta nta osa zma zma tae tae tae hvu sbi bdi
Symbol SPA4 SPA3 LOC103869936 LOC103868459 LOC103840863 LOC106410825 LOC106349428 LOC106400599 LOC107889384 LOC107902594 LOC121223434 LOC102627009 LOC100784064 LOC100811457 LOC100813635 LOC100258898 LOC100253988 LOC18095578 LOC7460821 LOC11411033 LOC101256107 LOC101249991 LOC102587101 LOC102590416 LOC107759187 LOC107768013 LOC107827325 LOC4324727 LOC103636244 LOC103651250 LOC123079128 LOC123062017 LOC123070723 LOC123444323 LOC8059209 LOC100833269
Function* SPA1-related 4 SPA1-related 3 protein SPA1-RELATED 3 protein SPA1-RELATED 4 protein SPA1-RELATED 3 protein SPA1-RELATED 4-like protein SPA1-RELATED 3 protein SPA1-RELATED 3-like protein SPA1-RELATED 3 protein SPA1-RELATED 3 protein SPA1-RELATED 3-like protein SPA1-RELATED 3 protein SPA1-RELATED 3 protein SPA1-RELATED 3 protein SPA1-RELATED 3 protein SPA1-RELATED 3 protein SPA1-RELATED 4 protein SPA1-RELATED 3 protein SPA1-RELATED 3 protein SPA1-RELATED 3 protein SPA1-RELATED 4-like protein SPA1-RELATED 4-like protein SPA1-RELATED 4-like protein SPA1-RELATED 4-like protein SPA1-RELATED 3 protein SPA1-RELATED 4 protein SPA1-RELATED 3 protein SPA1-RELATED 4 protein SPA1-RELATED 4 protein SPA1-RELATED 4 protein SPA1-RELATED 3 protein SPA1-RELATED 4 protein SPA1-RELATED 3 protein SPA1-RELATED 4-like protein SPA1-RELATED 4 protein SPA1-RELATED 4
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04712 Circadian rhythm - plant 4
ath00900 Terpenoid backbone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04712 Circadian rhythm - plant 5
ath04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00906 Carotenoid biosynthesis 2
bra04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00380 Tryptophan metabolism 2
bra00460 Cyanoamino acid metabolism 2
bra00910 Nitrogen metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04712 Circadian rhythm - plant 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04712 Circadian rhythm - plant 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04712 Circadian rhythm - plant 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04712 Circadian rhythm - plant 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04712 Circadian rhythm - plant 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04712 Circadian rhythm - plant 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04712 Circadian rhythm - plant 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00040 Pentose and glucuronate interconversions 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04712 Circadian rhythm - plant 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00860 Porphyrin metabolism 2
vvi01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04712 Circadian rhythm - plant 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04075 Plant hormone signal transduction 2
sly04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04712 Circadian rhythm - plant 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04712 Circadian rhythm - plant 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04712 Circadian rhythm - plant 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04712 Circadian rhythm - plant 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04712 Circadian rhythm - plant 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04712 Circadian rhythm - plant 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04712 Circadian rhythm - plant 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04712 Circadian rhythm - plant 5
tae00073 Cutin, suberine and wax biosynthesis 3
tae00561 Glycerolipid metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04712 Circadian rhythm - plant 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00010 Glycolysis / Gluconeogenesis 2
hvu01200 Carbon metabolism 2
hvu03420 Nucleotide excision repair 2
hvu00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04712 Circadian rhythm - plant 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04712 Circadian rhythm - plant 4
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 841743 820767 103869936 103868459 103840863 106410825 106349428 106400599 107889384 107902594 121223434 102627009 100784064 100811457 100813635 100258898 100253988 18095578 7460821 11411033 101256107 101249991 102587101 102590416 107759187 107768013 107827325 4324727 103636244 103651250 123079128 123062017 123070723 123444323 8059209 100833269
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