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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.9   RECQ4B   RECQ helicase L4B 
 ath-u.5   RECQ4B   RECQ helicase L4B 
 ath-r.7   RECQ4B   RECQ helicase L4B 
 ath-e.2   RECQ4B   RECQ helicase L4B 
 ath-m.4.bio   RECQ4B   RECQ helicase L4B 
 ath-m.4.hor   RECQ4B   RECQ helicase L4B 
 ath-m.4.lig   RECQ4B   RECQ helicase L4B 
 ath-m.4.str   RECQ4B   RECQ helicase L4B 
 ath-m.4.tis   RECQ4B   RECQ helicase L4B 
 ath-u.5   RECQ4A   DNA helicase (RECQl4A) 
 bra-r.6   103843270   ATP-dependent DNA helicase Q-like 4A 
 bra-r.6   103838471   ATP-dependent DNA helicase Q-like 4B 
 bna-r.1   106420196   ATP-dependent DNA helicase Q-like 4A 
 bna-r.1   106362128   ATP-dependent DNA helicase Q-like 4A 
 bna-r.1   106402633   ATP-dependent DNA helicase Q-like 4B 
 ghi-r.1   107919835   ATP-dependent DNA helicase Q-like 4A 
 ghi-r.1   107894237   ATP-dependent DNA helicase Q-like 4A 
 cit-r.1   102610752   ATP-dependent DNA helicase Q-like 4A 
 gma-u.5   100817867   ATP-dependent DNA helicase Q-like 4A 
 gma-u.5   100800006   ATP-dependent DNA helicase Q-like 4A 
 vvi-u.5   100245652   ATP-dependent DNA helicase Q-like 4A 
 mtr-u.5   11419769   ATP-dependent DNA helicase Q-like 4A 
 sly-u.5   101260976   ATP-dependent DNA helicase Q-like 4A 
 sot-r.1   102601604   ATP-dependent DNA helicase Q-like 4A 
 nta-r.1   107821048   ATP-dependent DNA helicase Q-like 4A 
 nta-r.1   107765327   ATP-dependent DNA helicase Q-like 4A 
 osa-u.5   4335888   ATP-dependent DNA helicase Q-like 4A 
 zma-u.5   100274706   ATP-dependent DNA helicase Q-like 4A 
 tae-r.2   123189243   ATP-dependent DNA helicase Q-like 4A 
 tae-r.2   123053342   ATP-dependent DNA helicase Q-like 4A 
 tae-r.2   123045493   ATP-dependent DNA helicase Q-like 4A 
 hvu-r.1   123426758   ATP-dependent DNA helicase Q-like 4A 
 sbi-r.1   8057544   ATP-dependent DNA helicase Q-like 4A 
 bdi-r.1   100841605   ATP-dependent DNA helicase Q-like 4A 
 cre-r.1   CHLRE_04g219750v5   uncharacterized protein 

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Top 50 coexpressed genes to RECQ4B (ath-m.9 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to RECQ4B (ath-m.9 coexpression data)

CoexMap"842384"


athRECQ4B | Entrez gene ID : 842384    
Species ath bra bna ghi cit gma vvi mtr sly sot nta osa zma tae hvu sbi bdi cre ppo
Paralog 10 2 3 2 1 2 1 1 1 1 2 1 1 3 1 1 1 1 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ath03440 [list] [network] Homologous recombination (60 genes)
ath03460 [list] [network] Fanconi anemia pathway (46 genes)
GO BP
GO:0070417 [list] [network] cellular response to cold  (38 genes)  IEP  
GO:0006310 [list] [network] DNA recombination  (113 genes)  IMP  
GO CC
GO:0005634 [list] [network] nucleus  (10367 genes)  ISM  
GO MF
Protein NP_176289.7 [sequence] [blastp]
Subcellular
localization
wolf
nucl 6,  chlo 2,  plas 1  (predict for NP_176289.7)
Subcellular
localization
TargetP
chlo 3  (predict for NP_176289.7)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.9
for
RECQ4B
ath-u.5
for
RECQ4B
ath-r.7
for
RECQ4B
ath-e.2
for
RECQ4B
ath-m.4.bio
for
RECQ4B
ath-m.4.hor
for
RECQ4B
ath-m.4.lig
for
RECQ4B
ath-m.4.str
for
RECQ4B
ath-m.4.tis
for
RECQ4B
ath-u.5
for
RECQ4A
bra-r.6
for
103843270
bra-r.6
for
103838471
bna-r.1
for
106420196
bna-r.1
for
106362128
bna-r.1
for
106402633
ghi-r.1
for
107919835
ghi-r.1
for
107894237
cit-r.1
for
102610752
gma-u.5
for
100817867
gma-u.5
for
100800006
vvi-u.5
for
100245652
mtr-u.5
for
11419769
sly-u.5
for
101260976
sot-r.1
for
102601604
nta-r.1
for
107821048
nta-r.1
for
107765327
osa-u.5
for
4335888
zma-u.5
for
100274706
tae-r.2
for
123189243
tae-r.2
for
123053342
tae-r.2
for
123045493
hvu-r.1
for
123426758
sbi-r.1
for
8057544
bdi-r.1
for
100841605
cre-r.1
for
CHLRE_04g219750v5


Ortholog ID: 7026
Species ath ath bra bra bna bna bna ghi ghi cit gma gma vvi mtr sly sot nta nta osa zma tae tae tae hvu sbi bdi cre
Symbol RECQ4B RECQ4A LOC103843270 LOC103838471 LOC106362128 LOC106447917 LOC106451717 LOC107919835 LOC107894237 LOC102610752 LOC100817867 LOC100800006 LOC100245652 LOC11419769 LOC101260976 LOC102601604 LOC107821048 LOC107765327 LOC4335888 LOC100274706 LOC123189243 LOC123053342 LOC123045493 LOC123426758 LOC8057544 LOC100841605 CHLRE_04g219750v5
Function* RECQ helicase L4B DNA helicase (RECQl4A) ATP-dependent DNA helicase Q-like 4A ATP-dependent DNA helicase Q-like 4B ATP-dependent DNA helicase Q-like 4A ATP-dependent DNA helicase Q-like 4B ATP-dependent DNA helicase Q-like 4A ATP-dependent DNA helicase Q-like 4A ATP-dependent DNA helicase Q-like 4A ATP-dependent DNA helicase Q-like 4A ATP-dependent DNA helicase Q-like 4A ATP-dependent DNA helicase Q-like 4A ATP-dependent DNA helicase Q-like 4A ATP-dependent DNA helicase Q-like 4A ATP-dependent DNA helicase Q-like 4A ATP-dependent DNA helicase Q-like 4A ATP-dependent DNA helicase Q-like 4A ATP-dependent DNA helicase Q-like 4A ATP-dependent DNA helicase Q-like 4A ATP-dependent DNA helicase Q-like 4A ATP-dependent DNA helicase Q-like 4A ATP-dependent DNA helicase Q-like 4A ATP-dependent DNA helicase Q-like 4A ATP-dependent DNA helicase Q-like 4A ATP-dependent DNA helicase Q-like 4A ATP-dependent DNA helicase Q-like 4A uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04814 Motor proteins 2
ath03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03440 Homologous recombination 2
ath03460 Fanconi anemia pathway 2
ath04814 Motor proteins 2
ath00270 Cysteine and methionine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03440 Homologous recombination 4
bna03460 Fanconi anemia pathway 4
bna00240 Pyrimidine metabolism 2
bna01232 Nucleotide metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03440 Homologous recombination 4
bna03460 Fanconi anemia pathway 4
bna00240 Pyrimidine metabolism 2
bna01232 Nucleotide metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03460 Fanconi anemia pathway 4
ghi04814 Motor proteins 2
ghi03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03460 Fanconi anemia pathway 3
ghi04814 Motor proteins 2
ghi03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03030 DNA replication 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03460 Fanconi anemia pathway 5
gma03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03460 Fanconi anemia pathway 4
gma03030 DNA replication 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03030 DNA replication 5
vvi03420 Nucleotide excision repair 3
vvi03410 Base excision repair 2
vvi03430 Mismatch repair 2
vvi03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04814 Motor proteins 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03440 Homologous recombination 3
sly03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03440 Homologous recombination 3
sot03430 Mismatch repair 2
sot03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03460 Fanconi anemia pathway 4
nta03440 Homologous recombination 3
nta00010 Glycolysis / Gluconeogenesis 2
nta00710 Carbon fixation by Calvin cycle 2
nta01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03440 Homologous recombination 5
nta03460 Fanconi anemia pathway 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03460 Fanconi anemia pathway 2
osa03030 DNA replication 2
osa04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04075 Plant hormone signal transduction 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03030 DNA replication 10
tae03440 Homologous recombination 3
tae03460 Fanconi anemia pathway 3
tae03410 Base excision repair 2
tae03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03030 DNA replication 11
tae03440 Homologous recombination 7
tae03410 Base excision repair 5
tae03420 Nucleotide excision repair 5
tae03460 Fanconi anemia pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03030 DNA replication 11
tae03440 Homologous recombination 3
tae03460 Fanconi anemia pathway 3
tae03410 Base excision repair 2
tae03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03082 ATP-dependent chromatin remodeling 3
bdi03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03440 Homologous recombination 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 842384 837636 103843270 103838471 106362128 106447917 106451717 107919835 107894237 102610752 100817867 100800006 100245652 11419769 101260976 102601604 107821048 107765327 4335888 100274706 123189243 123053342 123045493 123426758 8057544 100841605 5717851
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