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Orthologous genes in OrthoFinder**

Species Gene Description
 sly-u.5   101260976   ATP-dependent DNA helicase Q-like 4A 
 sly-r.6   101260976   ATP-dependent DNA helicase Q-like 4A 
 ath-u.5   RECQ4A   DNA helicase (RECQl4A) 
 ath-u.5   RECQ4B   RECQ helicase L4B 
 gma-u.5   100817867   ATP-dependent DNA helicase Q-like 4A 
 gma-u.5   100800006   ATP-dependent DNA helicase Q-like 4A 
 vvi-u.5   100245652   ATP-dependent DNA helicase Q-like 4A 
 mtr-u.5   11419769   ATP-dependent DNA helicase Q-like 4A 
 osa-u.5   4335888   ATP-dependent DNA helicase Q-like 4A 
 zma-u.5   100274706   ATP-dependent DNA helicase Q-like 4A 

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Top 50 coexpressed genes to 101260976 (sly-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 101260976 (sly-u.5 coexpression data)

CoexMap"101260976"


slyLOC101260976 | Entrez gene ID : 101260976      
Species sly ath gma vvi mtr osa zma sbi nta bra cre hvu cit bdi ppo sot tae bna ghi
Paralog 2 2 2 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG sly03440 [list] [network] Homologous recombination (60 genes)
sly03460 [list] [network] Fanconi anemia pathway (41 genes)
GO BP
GO:0000724 [list] [network] double-strand break repair via homologous recombination  (68 genes)  IEA  
GO:0006260 [list] [network] DNA replication  (107 genes)  IEA  
GO CC
GO:0005694 [list] [network] chromosome  (384 genes)  IEA  
GO:0005634 [list] [network] nucleus  (2947 genes)  IEA  
GO:0005737 [list] [network] cytoplasm  (5127 genes)  IEA  
GO MF
GO:0009378 [list] [network] four-way junction helicase activity  (8 genes)  IEA  
GO:0043138 [list] [network] 3'-5' DNA helicase activity  (13 genes)  IEA  
GO:0005524 [list] [network] ATP binding  (1916 genes)  IEA  
GO:0003676 [list] [network] nucleic acid binding  (4457 genes)  IEA  
Protein XP_004231337.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 7,  cyto_nucl 4,  vacu 1  (predict for XP_004231337.1)
Subcellular
localization
TargetP
other 7  (predict for XP_004231337.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

sly-u.5
for
101260976

.
sly-r.6
for
101260976

.
ath-u.5
for
RECQ4A

.
ath-u.5
for
RECQ4B

.
gma-u.5
for
100817867

.
gma-u.5
for
100800006

.
vvi-u.5
for
100245652

.
mtr-u.5
for
11419769

.
osa-u.5
for
4335888

.
zma-u.5
for
100274706

.


Ortholog ID: 7026
Species ath ath gma gma sly osa zma bra vvi mtr tae tae hvu ghi ghi bna bna cre sbi sot cit bdi nta nta
Symbol RECQ4A RECQ4B LOC100800006 LOC100817867 LOC101260976 LOC4335888 LOC100274706 LOC103838471 LOC100245652 LOC11419769 LOC123053342 LOC123045493 LOC123426758 LOC107919835 LOC107894237 LOC106451717 LOC106362128 CHLRE_04g219750v5 LOC8057544 LOC102601604 LOC102610752 LOC100841605 LOC107765327 LOC107821048
Function* DNA helicase (RECQl4A) RECQ helicase L4B ATP-dependent DNA helicase Q-like 4A ATP-dependent DNA helicase Q-like 4A ATP-dependent DNA helicase Q-like 4A ATP-dependent DNA helicase Q-like 4A ATP-dependent DNA helicase Q-like 4A ATP-dependent DNA helicase Q-like 4B ATP-dependent DNA helicase Q-like 4A ATP-dependent DNA helicase Q-like 4A ATP-dependent DNA helicase Q-like 4A ATP-dependent DNA helicase Q-like 4A ATP-dependent DNA helicase Q-like 4A ATP-dependent DNA helicase Q-like 4A ATP-dependent DNA helicase Q-like 4A ATP-dependent DNA helicase Q-like 4A ATP-dependent DNA helicase Q-like 4A uncharacterized protein ATP-dependent DNA helicase Q-like 4A ATP-dependent DNA helicase Q-like 4A ATP-dependent DNA helicase Q-like 4A ATP-dependent DNA helicase Q-like 4A ATP-dependent DNA helicase Q-like 4A ATP-dependent DNA helicase Q-like 4A
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03440 Homologous recombination 2
ath03460 Fanconi anemia pathway 2
ath04814 Motor proteins 2
ath00270 Cysteine and methionine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04814 Motor proteins 2
ath03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03460 Fanconi anemia pathway 4
gma03030 DNA replication 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03460 Fanconi anemia pathway 5
gma03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03440 Homologous recombination 3
sly03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03460 Fanconi anemia pathway 2
osa03030 DNA replication 2
osa04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04075 Plant hormone signal transduction 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03030 DNA replication 5
vvi03420 Nucleotide excision repair 3
vvi03410 Base excision repair 2
vvi03430 Mismatch repair 2
vvi03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04814 Motor proteins 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03030 DNA replication 11
tae03440 Homologous recombination 7
tae03410 Base excision repair 5
tae03420 Nucleotide excision repair 5
tae03460 Fanconi anemia pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03030 DNA replication 11
tae03440 Homologous recombination 3
tae03460 Fanconi anemia pathway 3
tae03410 Base excision repair 2
tae03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03460 Fanconi anemia pathway 4
ghi04814 Motor proteins 2
ghi03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03460 Fanconi anemia pathway 3
ghi04814 Motor proteins 2
ghi03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03440 Homologous recombination 4
bna03460 Fanconi anemia pathway 4
bna00240 Pyrimidine metabolism 2
bna01232 Nucleotide metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03440 Homologous recombination 4
bna03460 Fanconi anemia pathway 4
bna00240 Pyrimidine metabolism 2
bna01232 Nucleotide metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03440 Homologous recombination 3
sot03430 Mismatch repair 2
sot03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03030 DNA replication 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03082 ATP-dependent chromatin remodeling 3
bdi03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03440 Homologous recombination 5
nta03460 Fanconi anemia pathway 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03460 Fanconi anemia pathway 4
nta03440 Homologous recombination 3
nta00010 Glycolysis / Gluconeogenesis 2
nta00710 Carbon fixation by Calvin cycle 2
nta01200 Carbon metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 837636 842384 100800006 100817867 101260976 4335888 100274706 103838471 100245652 11419769 123053342 123045493 123426758 107919835 107894237 106451717 106362128 5717851 8057544 102601604 102610752 100841605 107765327 107821048
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