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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.9   PAO4   polyamine oxidase 4 
 ath-u.5   PAO4   polyamine oxidase 4 
 ath-r.7   PAO4   polyamine oxidase 4 
 ath-e.2   PAO4   polyamine oxidase 4 
 ath-m.4.bio   PAO4   polyamine oxidase 4 
 ath-m.4.hor   PAO4   polyamine oxidase 4 
 ath-m.4.lig   PAO4   polyamine oxidase 4 
 ath-m.4.str   PAO4   polyamine oxidase 4 
 ath-m.4.tis   PAO4   polyamine oxidase 4 
 ath-u.5   PAO2   polyamine oxidase 2 
 ath-u.5   PAO3   polyamine oxidase 3 
 bra-r.6   103858041   polyamine oxidase 2 
 bra-r.6   103866687   polyamine oxidase 2 
 bra-r.6   103852299   probable polyamine oxidase 4 
 bna-r.1   125606860   polyamine oxidase 2-like 
 bna-r.1   106441217   probable polyamine oxidase 4 
 bna-r.1   106428226   polyamine oxidase 3 
 ghi-r.1   107925953   polyamine oxidase 2 
 ghi-r.1   107916881   probable polyamine oxidase 4 
 ghi-r.1   107944271   probable polyamine oxidase 4 
 cit-r.1   102624788   probable polyamine oxidase 4 
 cit-r.1   102627867   polyamine oxidase 2-like 
 gma-u.5   100799631   polyamine oxidase 2 
 gma-u.5   100798561   polyamine oxidase 2 
 gma-u.5   100791090   probable polyamine oxidase 4 
 vvi-u.5   100245491   polyamine oxidase 2 
 vvi-u.5   100250153   probable polyamine oxidase 4 
 ppo-u.5   7464825   polyamine oxidase 2 
 ppo-u.5   7468334   probable polyamine oxidase 4 
 ppo-u.5   7468715   polyamine oxidase 2 
 mtr-u.5   11426561   probable polyamine oxidase 4 
 mtr-u.5   25490550   polyamine oxidase 2 
 mtr-u.5   11435419   polyamine oxidase 2 
 sly-u.5   101252005   polyamine oxidase 2-like 
 sly-u.5   101258232   probable polyamine oxidase 4 
 sly-u.5   101260014   polyamine oxidase 2 
 sot-r.1   102591553   probable polyamine oxidase 4 
 sot-r.1   102594410   probable polyamine oxidase 4 
 sot-r.1   102598184   probable polyamine oxidase 2 
 nta-r.1   107799822   polyamine oxidase 2 
 nta-r.1   107800087   polyamine oxidase 5 
 nta-r.1   107812697   putative polyamine oxidase 4 
 osa-u.5   4337360   polyamine oxidase 5-like 
 osa-u.5   4337359   probable polyamine oxidase 2 
 osa-u.5   4337046   polyamine oxidase 3-like 
 zma-u.5   101027113   lysine-specific histone demethylase 1 
 zma-u.5   100384522   uncharacterized LOC100384522 
 zma-u.5   103631209   polyamine oxidase 3 
 tae-r.2   123190982   polyamine oxidase 4 
 tae-r.2   123190477   polyamine oxidase 3 
 tae-r.2   123046773   polyamine oxidase 3 
 hvu-r.1   123428404   polyamine oxidase 5 
 hvu-r.1   123427789   polyamine oxidase 3 
 sbi-r.1   8082590   probable polyamine oxidase 4 
 sbi-r.1   8074727   probable polyamine oxidase 2 
 sbi-r.1   8082588   probable polyamine oxidase 2 
 bdi-r.1   100824039   probable polyamine oxidase 2 
 bdi-r.1   100840588   probable polyamine oxidase 4 
 bdi-r.1   100841193   probable polyamine oxidase 4 
 cre-r.1   CHLRE_10g447767v5   uncharacterized protein 

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Top 50 coexpressed genes to PAO4 (ath-m.9 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to PAO4 (ath-m.9 coexpression data)

CoexMap"842894"


athPAO4 | Entrez gene ID : 842894      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 11 3 3 3 2 3 2 3 3 3 3 3 3 3 3 2 3 3 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ath00330 [list] [network] Arginine and proline metabolism (54 genes)
ath00410 [list] [network] beta-Alanine metabolism (47 genes)
ath00770 [list] [network] Pantothenate and CoA biosynthesis (34 genes)
GO BP
GO:0006598 [list] [network] polyamine catabolic process  (6 genes)  IDA IMP  
GO CC
GO:0005777 [list] [network] peroxisome  (313 genes)  IDA  
GO MF
GO:0046592 [list] [network] polyamine oxidase activity  (5 genes)  IDA  
Protein NP_176759.1 [sequence] [blastp]
Subcellular
localization
wolf
E.R. 3,  chlo 2,  E.R._plas 2,  plas 1,  chlo_mito 1  (predict for NP_176759.1)
Subcellular
localization
TargetP
other 8,  chlo 3  (predict for NP_176759.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.9
for
PAO4
ath-u.5
for
PAO4
ath-r.7
for
PAO4
ath-e.2
for
PAO4
ath-m.4.bio
for
PAO4
ath-m.4.hor
for
PAO4
ath-m.4.lig
for
PAO4
ath-m.4.str
for
PAO4
ath-m.4.tis
for
PAO4
ath-u.5
for
PAO2
ath-u.5
for
PAO3
bra-r.6
for
103858041
bra-r.6
for
103866687
bra-r.6
for
103852299
bna-r.1
for
125606860
bna-r.1
for
106441217
bna-r.1
for
106428226
ghi-r.1
for
107925953
ghi-r.1
for
107916881
ghi-r.1
for
107944271
cit-r.1
for
102624788
cit-r.1
for
102627867
gma-u.5
for
100799631
gma-u.5
for
100798561
gma-u.5
for
100791090
vvi-u.5
for
100245491
vvi-u.5
for
100250153
ppo-u.5
for
7464825
ppo-u.5
for
7468334
ppo-u.5
for
7468715
mtr-u.5
for
11426561
mtr-u.5
for
25490550
mtr-u.5
for
11435419
sly-u.5
for
101252005
sly-u.5
for
101258232
sly-u.5
for
101260014
sot-r.1
for
102591553
sot-r.1
for
102594410
sot-r.1
for
102598184
nta-r.1
for
107799822
nta-r.1
for
107800087
nta-r.1
for
107812697
osa-u.5
for
4337360
osa-u.5
for
4337359
osa-u.5
for
4337046
zma-u.5
for
101027113
zma-u.5
for
100384522
zma-u.5
for
103631209
tae-r.2
for
123190982
tae-r.2
for
123190477
tae-r.2
for
123046773
hvu-r.1
for
123428404
hvu-r.1
for
123427789
sbi-r.1
for
8082590
sbi-r.1
for
8074727
sbi-r.1
for
8082588
bdi-r.1
for
100824039
bdi-r.1
for
100840588
bdi-r.1
for
100841193
cre-r.1
for
CHLRE_10g447767v5


Ortholog ID: 1306
Species ath ath ath bra bra bra bna bna bna ghi ghi ghi cit cit gma gma gma vvi vvi ppo ppo ppo mtr mtr mtr sly sly sly sot sot sot nta nta nta osa osa osa zma zma tae tae tae hvu hvu sbi sbi sbi bdi bdi bdi cre
Symbol PAO4 PAO2 PAO3 LOC103858041 LOC103866687 LOC103852299 LOC106441217 LOC106353169 LOC106381329 LOC107916881 LOC107944271 LOC107945473 LOC102624788 LOC102627867 LOC100799631 LOC100798561 LOC100791090 LOC100245491 LOC100250153 LOC7464825 LOC7468334 LOC18106497 LOC11426561 LOC25490550 LOC11435419 LOC101252005 LOC101260014 LOC101264170 LOC102591553 LOC102594410 LOC102598184 LOC107799822 LOC107800087 LOC107761719 LOC4337360 LOC4337359 LOC4337046 LOC101027113 LOC100384522 LOC123055128 LOC123054629 LOC123055127 LOC123428404 LOC123427789 LOC8082590 LOC8074727 LOC8082588 LOC100824039 LOC100840588 LOC100841193 CHLRE_10g447767v5
Function* polyamine oxidase 4 polyamine oxidase 2 polyamine oxidase 3 polyamine oxidase 2 polyamine oxidase 2 probable polyamine oxidase 4 probable polyamine oxidase 4 polyamine oxidase 3-like probable polyamine oxidase 4 probable polyamine oxidase 4 probable polyamine oxidase 4 polyamine oxidase 2 probable polyamine oxidase 4 polyamine oxidase 2-like polyamine oxidase 2 polyamine oxidase 2 probable polyamine oxidase 4 polyamine oxidase 2 probable polyamine oxidase 4 polyamine oxidase 2 probable polyamine oxidase 4 probable polyamine oxidase 4 probable polyamine oxidase 4 polyamine oxidase 2 polyamine oxidase 2 polyamine oxidase 2-like polyamine oxidase 2 probable polyamine oxidase 4 probable polyamine oxidase 4 probable polyamine oxidase 4 probable polyamine oxidase 2 polyamine oxidase 2 polyamine oxidase 5 putative polyamine oxidase 4 polyamine oxidase 5-like probable polyamine oxidase 2 polyamine oxidase 3-like lysine-specific histone demethylase 1 uncharacterized LOC100384522 polyamine oxidase 4 polyamine oxidase 3 polyamine oxidase 5 polyamine oxidase 5 polyamine oxidase 3 probable polyamine oxidase 4 probable polyamine oxidase 2 probable polyamine oxidase 2 probable polyamine oxidase 2 probable polyamine oxidase 4 probable polyamine oxidase 4 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00400 Phenylalanine, tyrosine and tryptophan biosynthesis 5
ath01230 Biosynthesis of amino acids 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00330 Arginine and proline metabolism 3
ath01200 Carbon metabolism 2
ath04141 Protein processing in endoplasmic reticulum 2
ath00480 Glutathione metabolism 2
ath03050 Proteasome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00330 Arginine and proline metabolism 3
ath00410 beta-Alanine metabolism 2
ath00770 Pantothenate and CoA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00270 Cysteine and methionine metabolism 4
bra01230 Biosynthesis of amino acids 4
bra00330 Arginine and proline metabolism 3
bra00410 beta-Alanine metabolism 3
bra00450 Selenocompound metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00330 Arginine and proline metabolism 2
bna00410 beta-Alanine metabolism 2
bna00770 Pantothenate and CoA biosynthesis 2
bna04075 Plant hormone signal transduction 2
bna04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00730 Thiamine metabolism 2
bna01240 Biosynthesis of cofactors 2
bna00330 Arginine and proline metabolism 2
bna00410 beta-Alanine metabolism 2
bna00770 Pantothenate and CoA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00330 Arginine and proline metabolism 2
bna00410 beta-Alanine metabolism 2
bna00770 Pantothenate and CoA biosynthesis 2
bna04075 Plant hormone signal transduction 2
bna04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00330 Arginine and proline metabolism 2
ghi00410 beta-Alanine metabolism 2
ghi00770 Pantothenate and CoA biosynthesis 2
ghi00290 Valine, leucine and isoleucine biosynthesis 2
ghi00660 C5-Branched dibasic acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00330 Arginine and proline metabolism 2
ghi00410 beta-Alanine metabolism 2
ghi00770 Pantothenate and CoA biosynthesis 2
ghi00290 Valine, leucine and isoleucine biosynthesis 2
ghi00660 C5-Branched dibasic acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00330 Arginine and proline metabolism 2
ghi00410 beta-Alanine metabolism 2
ghi00770 Pantothenate and CoA biosynthesis 2
ghi04016 MAPK signaling pathway - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00564 Glycerophospholipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00330 Arginine and proline metabolism 4
gma00270 Cysteine and methionine metabolism 2
gma00480 Glutathione metabolism 2
gma00410 beta-Alanine metabolism 2
gma00770 Pantothenate and CoA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00330 Arginine and proline metabolism 2
gma00410 beta-Alanine metabolism 2
gma00770 Pantothenate and CoA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04144 Endocytosis 4
gma04120 Ubiquitin mediated proteolysis 2
gma03015 mRNA surveillance pathway 2
gma04145 Phagosome 2
gma04148 Efferocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00410 beta-Alanine metabolism 4
ppo00260 Glycine, serine and threonine metabolism 2
ppo00350 Tyrosine metabolism 2
ppo00360 Phenylalanine metabolism 2
ppo00950 Isoquinoline alkaloid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04016 MAPK signaling pathway - plant 3
ppo03018 RNA degradation 2
ppo01250 Biosynthesis of nucleotide sugars 2
ppo04075 Plant hormone signal transduction 2
ppo00071 Fatty acid degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00040 Pentose and glucuronate interconversions 3
mtr00330 Arginine and proline metabolism 2
mtr04016 MAPK signaling pathway - plant 2
mtr04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00330 Arginine and proline metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04016 MAPK signaling pathway - plant 7
sot04075 Plant hormone signal transduction 6
sot00230 Purine metabolism 2
sot01232 Nucleotide metabolism 2
sot00330 Arginine and proline metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00330 Arginine and proline metabolism 2
sot00410 beta-Alanine metabolism 2
sot00770 Pantothenate and CoA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04712 Circadian rhythm - plant 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00330 Arginine and proline metabolism 2
nta00410 beta-Alanine metabolism 2
nta00770 Pantothenate and CoA biosynthesis 2
nta00906 Carotenoid biosynthesis 2
nta00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00330 Arginine and proline metabolism 4
nta00410 beta-Alanine metabolism 4
nta00770 Pantothenate and CoA biosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00330 Arginine and proline metabolism 4
nta00410 beta-Alanine metabolism 4
nta00770 Pantothenate and CoA biosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00010 Glycolysis / Gluconeogenesis 4
osa01200 Carbon metabolism 3
osa01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04075 Plant hormone signal transduction 10
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00330 Arginine and proline metabolism 3
zma00410 beta-Alanine metabolism 3
zma00770 Pantothenate and CoA biosynthesis 3
zma04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00330 Arginine and proline metabolism 2
zma00410 beta-Alanine metabolism 2
zma00770 Pantothenate and CoA biosynthesis 2
zma04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00330 Arginine and proline metabolism 6
tae00410 beta-Alanine metabolism 6
tae00770 Pantothenate and CoA biosynthesis 6
tae03013 Nucleocytoplasmic transport 2
tae03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00330 Arginine and proline metabolism 3
tae00410 beta-Alanine metabolism 3
tae00770 Pantothenate and CoA biosynthesis 3
tae03060 Protein export 2
tae04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00330 Arginine and proline metabolism 6
tae00410 beta-Alanine metabolism 6
tae00770 Pantothenate and CoA biosynthesis 6
tae03013 Nucleocytoplasmic transport 2
tae03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04142 Lysosome 2
hvu04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00592 alpha-Linolenic acid metabolism 2
hvu00330 Arginine and proline metabolism 2
hvu04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi01230 Biosynthesis of amino acids 2
sbi04712 Circadian rhythm - plant 2
sbi01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04075 Plant hormone signal transduction 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00460 Cyanoamino acid metabolism 4
bdi00500 Starch and sucrose metabolism 4
bdi00999 Biosynthesis of various plant secondary metabolites 4
bdi01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04712 Circadian rhythm - plant 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre00380 Tryptophan metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 842894 818904 825074 103858041 103866687 103852299 106441217 106353169 106381329 107916881 107944271 107945473 102624788 102627867 100799631 100798561 100791090 100245491 100250153 7464825 7468334 18106497 11426561 25490550 11435419 101252005 101260014 101264170 102591553 102594410 102598184 107799822 107800087 107761719 4337360 4337359 4337046 101027113 100384522 123055128 123054629 123055127 123428404 123427789 8082590 8074727 8082588 100824039 100840588 100841193 5724032
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