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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.9   AT1G67360   Rubber elongation factor protein (REF) 
 ath-u.5   AT1G67360   Rubber elongation factor protein (REF) 
 ath-r.7   AT1G67360   Rubber elongation factor protein (REF) 
 ath-e.2   AT1G67360   Rubber elongation factor protein (REF) 
 ath-m.4.bio   AT1G67360   Rubber elongation factor protein (REF) 
 ath-m.4.hor   AT1G67360   Rubber elongation factor protein (REF) 
 ath-m.4.lig   AT1G67360   Rubber elongation factor protein (REF) 
 ath-m.4.str   AT1G67360   Rubber elongation factor protein (REF) 
 ath-m.4.tis   AT1G67360   Rubber elongation factor protein (REF) 
 bra-r.6   103852398   REF/SRPP-like protein At1g67360 
 bra-r.6   103831029   REF/SRPP-like protein At1g67360 
 bna-r.1   106410828   REF/SRPP-like protein At1g67360 
 bna-r.1   106392006   REF/SRPP-like protein At1g67360 
 bna-r.1   106375631   REF/SRPP-like protein At1g67360 
 ghi-r.1   107933388   REF/SRPP-like protein At1g67360 
 ghi-r.1   107909842   REF/SRPP-like protein At1g67360 
 ghi-r.1   107898624   REF/SRPP-like protein At1g67360 
 cit-r.1   102607080   REF/SRPP-like protein At1g67360 
 gma-u.5   100816931   REF/SRPP-like protein At1g67360 
 gma-u.5   100500275   REF/SRPP/SRP domain-containing protein 
 ppo-u.5   7481232   REF/SRPP-like protein At1g67360 
 ppo-u.5   7482780   REF/SRPP-like protein At1g67360 
 mtr-u.5   25501748   REF/SRPP-like protein At1g67360 
 mtr-u.5   25489672   uncharacterized LOC25489672 
 mtr-u.5   25483653   REF/SRPP-like protein At1g67360 
 sot-r.1   102591020   REF/SRPP-like protein At1g67360 
 nta-r.1   107765167   REF/SRPP-like protein At1g67360 
 nta-r.1   107804268   REF/SRPP-like protein At1g67360 

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Top 50 coexpressed genes to AT1G67360 (ath-m.9 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to AT1G67360 (ath-m.9 coexpression data)

CoexMap"843057"


athAT1G67360 | Entrez gene ID : 843057      
Species ath bra bna ghi cit gma ppo mtr sot nta sbi cre tae sly zma osa bdi hvu vvi
Paralog 9 2 3 3 1 2 2 3 1 2 0 0 0 0 0 0 0 0 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0080186 [list] [network] developmental vegetative growth  (11 genes)  IMP  
GO:0034389 [list] [network] lipid droplet organization  (12 genes)  IMP  
GO:1902584 [list] [network] positive regulation of response to water deprivation  (19 genes)  IMP  
GO:0045927 [list] [network] positive regulation of growth  (39 genes)  IMP  
GO:0071456 [list] [network] cellular response to hypoxia  (241 genes)  HEP  
GO:0009555 [list] [network] pollen development  (385 genes)  IMP  
GO CC
GO:0005811 [list] [network] lipid droplet  (54 genes)  IDA  
GO:0000325 [list] [network] plant-type vacuole  (788 genes)  HDA  
GO:0005783 [list] [network] endoplasmic reticulum  (897 genes)  IDA  
GO:0005737 [list] [network] cytoplasm  (14000 genes)  ISM  
GO MF
Protein NP_176904.1 [sequence] [blastp]
NP_849856.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 7,  chlo 1,  nucl 1,  mito 1,  pero 1,  chlo_mito 1  (predict for NP_176904.1)
cyto 7,  chlo 1,  nucl 1,  mito 1,  pero 1,  chlo_mito 1  (predict for NP_849856.1)
Subcellular
localization
TargetP
scret 8,  other 3  (predict for NP_176904.1)
scret 8,  other 3  (predict for NP_849856.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.9
for
AT1G67360
ath-u.5
for
AT1G67360
ath-r.7
for
AT1G67360
ath-e.2
for
AT1G67360
ath-m.4.bio
for
AT1G67360
ath-m.4.hor
for
AT1G67360
ath-m.4.lig
for
AT1G67360
ath-m.4.str
for
AT1G67360
ath-m.4.tis
for
AT1G67360
bra-r.6
for
103852398
bra-r.6
for
103831029
bna-r.1
for
106410828
bna-r.1
for
106392006
bna-r.1
for
106375631
ghi-r.1
for
107933388
ghi-r.1
for
107909842
ghi-r.1
for
107898624
cit-r.1
for
102607080
gma-u.5
for
100816931
gma-u.5
for
100500275
ppo-u.5
for
7481232
ppo-u.5
for
7482780
mtr-u.5
for
25501748
mtr-u.5
for
25489672
mtr-u.5
for
25483653
sot-r.1
for
102591020
nta-r.1
for
107765167
nta-r.1
for
107804268


Ortholog ID: 10540
Species ath bra bra bna bna bna ghi ghi ghi cit gma gma ppo ppo mtr mtr mtr sot nta nta
Symbol AT1G67360 LOC103852398 LOC103831029 LOC106410828 LOC106392006 LOC125574794 LOC107933388 LOC107898624 LOC107886462 LOC102607080 LOC100816931 LOC100500275 LOC7481232 LOC7482780 LOC25501748 LOC25489672 LOC25483653 LOC102591020 LOC107765167 LOC107804268
Function* Rubber elongation factor protein (REF) REF/SRPP-like protein At1g67360 REF/SRPP-like protein At1g67360 REF/SRPP-like protein At1g67360 REF/SRPP-like protein At1g67360 REF/SRPP-like protein At1g67360 REF/SRPP-like protein At1g67360 REF/SRPP-like protein At1g67360 REF/SRPP-like protein At1g67360 REF/SRPP-like protein At1g67360 REF/SRPP-like protein At1g67360 REF/SRPP/SRP domain-containing protein REF/SRPP-like protein At1g67360 REF/SRPP-like protein At1g67360 REF/SRPP-like protein At1g67360 uncharacterized LOC25489672 REF/SRPP-like protein At1g67360 REF/SRPP-like protein At1g67360 REF/SRPP-like protein At1g67360 REF/SRPP-like protein At1g67360
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04016 MAPK signaling pathway - plant 3
bra04075 Plant hormone signal transduction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 4
bra04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00908 Zeatin biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04016 MAPK signaling pathway - plant 2
ghi04075 Plant hormone signal transduction 2
ghi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04141 Protein processing in endoplasmic reticulum 5
cit04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 2
gma04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00061 Fatty acid biosynthesis 3
gma00620 Pyruvate metabolism 3
gma01200 Carbon metabolism 3
gma01212 Fatty acid metabolism 3
gma00780 Biotin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04141 Protein processing in endoplasmic reticulum 3
mtr03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr01250 Biosynthesis of nucleotide sugars 3
mtr00541 Biosynthesis of various nucleotide sugars 2
mtr04814 Motor proteins 2
mtr00520 Amino sugar and nucleotide sugar metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04141 Protein processing in endoplasmic reticulum 3
sot03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 4
nta00480 Glutathione metabolism 2
nta04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00480 Glutathione metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 843057 103852398 103831029 106410828 106392006 125574794 107933388 107898624 107886462 102607080 100816931 100500275 7481232 7482780 25501748 25489672 25483653 102591020 107765167 107804268
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