ATTED-II : GeneCoexpression result

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Orthologous genes in OrthoFinder^**

Species	Gene	Description
ath-m.9	MMP	matrix metalloproteinase
ath-u.5	MMP	matrix metalloproteinase
ath-r.7	MMP	matrix metalloproteinase
ath-e.2	MMP	matrix metalloproteinase
ath-m.4.bio	MMP	matrix metalloproteinase
ath-m.4.hor	MMP	matrix metalloproteinase
ath-m.4.lig	MMP	matrix metalloproteinase
ath-m.4.str	MMP	matrix metalloproteinase
ath-m.4.tis	MMP	matrix metalloproteinase
ath-u.5	AT1G24140	Matrixin family protein
bra-r.6	103838570	metalloendoproteinase 5-MMP
bra-r.6	103830895	metalloendoproteinase 2-MMP
bna-r.1	111199279	metalloendoproteinase 2-MMP-like
bna-r.1	106381800	metalloendoproteinase 3-MMP
ghi-r.1	107915776	metalloendoproteinase 5-MMP
ghi-r.1	107912216	metalloendoproteinase 4-MMP
ghi-r.1	107911886	metalloendoproteinase 4-MMP
cit-r.1	102627001	metalloendoproteinase 3-MMP-like
gma-u.5	SMEP1	metalloproteinase
mtr-u.5	11406532	metalloendoproteinase 2-MMP
mtr-u.5	11410103	metalloendoproteinase 1
mtr-u.5	11409998	metalloendoproteinase 2-MMP
sly-u.5	MMP1	matrix metalloproteinases protein 3
sly-u.5	101251805	metalloendoproteinase 4-MMP
sot-r.1	102592086	metalloendoproteinase 3-MMP-like
sot-r.1	102591586	metalloendoproteinase 4-MMP
nta-r.1	107782587	metalloendoproteinase 4-MMP-like
nta-r.1	107776901	metalloendoproteinase 1-MMP-like
osa-u.5	4330680	metalloendoproteinase 2-MMP
osa-u.5	4349359	metalloendoproteinase 1-MMP
zma-u.5	100285384	metalloendoproteinase 1
zma-u.5	100274259	Metalloendoproteinase 5-MMP
zma-u.5	103637649	metalloendoproteinase 1-MMP
tae-r.2	123157482	metalloendoproteinase 2-MMP
tae-r.2	123141822	metalloendoproteinase 3-MMP
tae-r.2	123052586	metalloendoproteinase 1-MMP-like
hvu-r.1	123449985	metalloendoproteinase 1-MMP-like
hvu-r.1	123439670	metalloendoproteinase 1-MMP-like
hvu-r.1	123413262	metalloendoproteinase 2-MMP-like
sbi-r.1	8068601	metalloendoproteinase 2-MMP
sbi-r.1	8061483	metalloendoproteinase 2-MMP
sbi-r.1	8058083	metalloendoproteinase 1-MMP
bdi-r.1	100844905	metalloendoproteinase 1-MMP
bdi-r.1	100826984	metalloendoproteinase 3-MMP
bdi-r.1	100828046	metalloendoproteinase 3-MMP
cre-r.1	CHLRE_14g609202v5	uncharacterized protein

Top 50 coexpressed genes to MMP (ath-m.9 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to MMP (ath-m.9 coexpression data)

CoexMap"843353"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO:0080186 [list] [network] developmental vegetative growth	(11 genes)	IMP
GO:1900056 [list] [network] negative regulation of leaf senescence	(22 genes)	IMP
GO:0046686 [list] [network] response to cadmium ion	(81 genes)	IEP
GO:2000028 [list] [network] regulation of photoperiodism, flowering	(101 genes)	IMP
GO:0009753 [list] [network] response to jasmonic acid	(202 genes)	IEP
GO:0050832 [list] [network] defense response to fungus	(282 genes)	IMP
GO:0009651 [list] [network] response to salt stress	(473 genes)	IEP

GO CC

GO:0031012 [list] [network] extracellular matrix	(23 genes)	IEA
GO:0048046 [list] [network] apoplast	(340 genes)	IDA
GO:0005886 [list] [network] plasma membrane	(2598 genes)	IDA
GO:0005576 [list] [network] extracellular region	(3158 genes)	ISM
GO:0016020 [list] [network] membrane	(3740 genes)	TAS

GO MF

GO:0004222 [list] [network] metalloendopeptidase activity	(35 genes)	IDA
GO:0008237 [list] [network] metallopeptidase activity	(51 genes)	IDA

Protein

NP_177174.1 [sequence] [blastp]

Subcellular
localization
wolf

plas 4, chlo 4, E.R. 1

(predict for NP_177174.1)

Subcellular
localization
TargetP

scret 9

(predict for NP_177174.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target				Condition-specific^*					Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ath-m.9 for MMP	ath-u.5 for MMP	ath-r.7 for MMP	ath-e.2 for MMP	ath-m.4.bio for MMP	ath-m.4.hor for MMP	ath-m.4.lig for MMP	ath-m.4.str for MMP	ath-m.4.tis for MMP	ath-u.5 for AT1G24140	bra-r.6 for 103838570	bra-r.6 for 103830895	bna-r.1 for 111199279	bna-r.1 for 106381800	ghi-r.1 for 107915776	ghi-r.1 for 107912216	ghi-r.1 for 107911886	cit-r.1 for 102627001	gma-u.5 for SMEP1	mtr-u.5 for 11406532	mtr-u.5 for 11410103	mtr-u.5 for 11409998	sly-u.5 for MMP1	sly-u.5 for 101251805	sot-r.1 for 102592086	sot-r.1 for 102591586	nta-r.1 for 107782587	nta-r.1 for 107776901	osa-u.5 for 4330680	osa-u.5 for 4349359	zma-u.5 for 100285384	zma-u.5 for 100274259	zma-u.5 for 103637649	tae-r.2 for 123157482	tae-r.2 for 123141822	tae-r.2 for 123052586	hvu-r.1 for 123449985	hvu-r.1 for 123439670	hvu-r.1 for 123413262	sbi-r.1 for 8068601	sbi-r.1 for 8061483	sbi-r.1 for 8058083	bdi-r.1 for 100844905	bdi-r.1 for 100826984	bdi-r.1 for 100828046	cre-r.1 for CHLRE_14g609202v5

Ortholog

Ortholog ID: 384

Species

ath

bra

ghi

cit

gma

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

MMP

SMEP1

MMP1

MMP2

Function^*

matrix metalloproteinase

Matrixin family protein

metalloendoproteinase 5-MMP

metalloendoproteinase 2-MMP

metalloendoproteinase 5-MMP

metalloendoproteinase 4-MMP

metalloendoproteinase 2-MMP-like

metalloendoproteinase 3-MMP

metalloproteinase

metalloendoproteinase 2-MMP

metalloendoproteinase 1

metalloendoproteinase 2-MMP

metalloendoproteinase 1

metalloendoproteinase 4-MMP

matrix metalloproteinases protein 3

matrix metalloproteinase 2

metalloendoproteinase 3-MMP-like

metalloendoproteinase 4-MMP

metalloendoproteinase 1-MMP-like

metalloendoproteinase 2-MMP

metalloendoproteinase 1

Metalloendoproteinase 5-MMP

metalloendoproteinase 1-MMP

metalloendoproteinase 1-MMP-like

metalloendoproteinase 4-MMP

metalloendoproteinase 1-MMP-like

metalloendoproteinase 2-MMP-like

metalloendoproteinase 3-MMP-like

metalloendoproteinase 2-MMP

metalloendoproteinase 1-MMP

metalloendoproteinase 3-MMP

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath00561	Glycerolipid metabolism	2
ath00564	Glycerophospholipid metabolism	2
ath02010	ABC transporters	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00561	Glycerolipid metabolism	3
bra00564	Glycerophospholipid metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00500	Starch and sucrose metabolism	5
ghi04016	MAPK signaling pathway - plant	4
ghi04075	Plant hormone signal transduction	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit04626	Plant-pathogen interaction	3
cit04016	MAPK signaling pathway - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04016	MAPK signaling pathway - plant	2
gma04075	Plant hormone signal transduction	2
gma04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo01200	Carbon metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04626	Plant-pathogen interaction	4
sly04016	MAPK signaling pathway - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04626	Plant-pathogen interaction	4
sly04016	MAPK signaling pathway - plant	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot01240	Biosynthesis of cofactors	2
sot00360	Phenylalanine metabolism	2
sot00940	Phenylpropanoid biosynthesis	2
sot04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04142	Lysosome	2
nta04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00561	Glycerolipid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00520	Amino sugar and nucleotide sugar metabolism	3
tae01250	Biosynthesis of nucleotide sugars	3
tae03060	Protein export	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04016	MAPK signaling pathway - plant	3
tae04075	Plant hormone signal transduction	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04016	MAPK signaling pathway - plant	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi00908	Zeatin biosynthesis	4
bdi04075	Plant hormone signal transduction	2
bdi04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04626	Plant-pathogen interaction	2

Expression

Expression pattern

Entrez Gene ID^*

843353

839026

842291

103838570

103830895

103831562

107915776

107912216

107945266

102616119

547880

100782143

18104342

11409998

25494610

11442232

101055590

101260125

102592086

102591586

107776901

107760134

9270797

100285384

100274259

103637649

123052586

123099138

123106099

123439670

123413262

123402518

8068601

8061483

8058083

100844905

100826984

100828046

5726898

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Species	ath	bra	bna	ghi	cit	gma	mtr	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre	vvi	ppo
Paralog	10	2	2	3	1	1	3	2	2	2	2	3	3	3	3	3	1	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to MMP (ath-m.9 coexpression data)

Top 50 enrichment test to MMP (ath-m.9 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**