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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.9   AT1G71460   Pentatricopeptide repeat (PPR-like) superfamily protein 
 ath-u.5   AT1G71460   Pentatricopeptide repeat (PPR-like) superfamily protein 
 ath-r.7   AT1G71460   Pentatricopeptide repeat (PPR-like) superfamily protein 
 ath-e.2   AT1G71460   Pentatricopeptide repeat (PPR-like) superfamily protein 
 ath-m.4.bio   AT1G71460   Pentatricopeptide repeat (PPR-like) superfamily protein 
 ath-m.4.hor   AT1G71460   Pentatricopeptide repeat (PPR-like) superfamily protein 
 ath-m.4.lig   AT1G71460   Pentatricopeptide repeat (PPR-like) superfamily protein 
 ath-m.4.str   AT1G71460   Pentatricopeptide repeat (PPR-like) superfamily protein 
 ath-m.4.tis   AT1G71460   Pentatricopeptide repeat (PPR-like) superfamily protein 
 bra-r.6   103831667   pentatricopeptide repeat-containing protein At1g71460, chloroplastic 
 bna-r.1   106406679   pentatricopeptide repeat-containing protein At1g71460, chloroplastic-like 
 bna-r.1   106354149   pentatricopeptide repeat-containing protein At1g71460, chloroplastic 
 ghi-r.1   107914200   pentatricopeptide repeat-containing protein At1g71460, chloroplastic 
 ghi-r.1   107957635   pentatricopeptide repeat-containing protein At1g71460, chloroplastic-like 
 cit-r.1   102616684   pentatricopeptide repeat-containing protein At1g71460, chloroplastic 
 gma-u.5   100809249   pentatricopeptide repeat-containing protein At1g71460, chloroplastic 
 vvi-u.5   100248221   pentatricopeptide repeat-containing protein At1g71460, chloroplastic 
 ppo-u.5   7455263   pentatricopeptide repeat-containing protein At1g71460, chloroplastic 
 mtr-u.5   11420489   pentatricopeptide repeat-containing protein At1g71460, chloroplastic 
 sly-u.5   101249382   pentatricopeptide repeat-containing protein At1g71460, chloroplastic 
 nta-r.1   107762596   pentatricopeptide repeat-containing protein At1g71460, chloroplastic-like 
 nta-r.1   107829236   pentatricopeptide repeat-containing protein At1g71460, chloroplastic-like 
 osa-u.5   107279790   pentatricopeptide repeat-containing protein At1g71460, chloroplastic 
 zma-u.5   100274147   Pentatricopeptide repeat-containing protein chloroplastic 
 tae-r.2   123102799   pentatricopeptide repeat-containing protein At1g71460, chloroplastic-like 
 tae-r.2   123119947   pentatricopeptide repeat-containing protein At1g71460, chloroplastic 
 hvu-r.1   123397534   pentatricopeptide repeat-containing protein At1g71460, chloroplastic 
 sbi-r.1   8084800   pentatricopeptide repeat-containing protein At1g71460, chloroplastic 
 bdi-r.1   100830246   pentatricopeptide repeat-containing protein At1g71460, chloroplastic 

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Top 50 coexpressed genes to AT1G71460 (ath-m.9 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to AT1G71460 (ath-m.9 coexpression data)

CoexMap"843487"


athAT1G71460 | Entrez gene ID : 843487      
Species ath bra bna ghi cit gma vvi ppo mtr sly nta osa zma tae hvu sbi bdi cre sot
Paralog 9 1 2 2 1 1 1 1 1 1 2 1 1 2 1 1 1 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO:0009507 [list] [network] chloroplast  (5014 genes)  ISM  
GO MF
GO:0003729 [list] [network] mRNA binding  (1514 genes)  IDA  
Protein NP_177302.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 4,  chlo 2,  nucl 2,  plas 1  (predict for NP_177302.1)
Subcellular
localization
TargetP
chlo 5  (predict for NP_177302.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.9
for
AT1G71460
ath-u.5
for
AT1G71460
ath-r.7
for
AT1G71460
ath-e.2
for
AT1G71460
ath-m.4.bio
for
AT1G71460
ath-m.4.hor
for
AT1G71460
ath-m.4.lig
for
AT1G71460
ath-m.4.str
for
AT1G71460
ath-m.4.tis
for
AT1G71460
bra-r.6
for
103831667
bna-r.1
for
106406679
bna-r.1
for
106354149
ghi-r.1
for
107914200
ghi-r.1
for
107957635
cit-r.1
for
102616684
gma-u.5
for
100809249
vvi-u.5
for
100248221
ppo-u.5
for
7455263
mtr-u.5
for
11420489
sly-u.5
for
101249382
nta-r.1
for
107762596
nta-r.1
for
107829236
osa-u.5
for
107279790
zma-u.5
for
100274147
tae-r.2
for
123102799
tae-r.2
for
123119947
hvu-r.1
for
123397534
sbi-r.1
for
8084800
bdi-r.1
for
100830246


Ortholog ID: 12047
Species ath bra bna bna ghi ghi cit gma vvi ppo mtr sly nta nta osa zma tae tae hvu sbi bdi
Symbol AT1G71460 LOC103831667 LOC106406679 LOC106354149 LOC107914200 LOC107957635 LOC102616684 LOC100809249 LOC100248221 LOC7455263 LOC11420489 LOC101249382 LOC107762596 LOC107829236 LOC107279790 LOC100274147 LOC123102799 LOC123119947 LOC123397534 LOC8084800 LOC100830246
Function* Pentatricopeptide repeat (PPR-like) superfamily protein pentatricopeptide repeat-containing protein At1g71460, chloroplastic pentatricopeptide repeat-containing protein At1g71460, chloroplastic-like pentatricopeptide repeat-containing protein At1g71460, chloroplastic pentatricopeptide repeat-containing protein At1g71460, chloroplastic pentatricopeptide repeat-containing protein At1g71460, chloroplastic-like pentatricopeptide repeat-containing protein At1g71460, chloroplastic pentatricopeptide repeat-containing protein At1g71460, chloroplastic pentatricopeptide repeat-containing protein At1g71460, chloroplastic pentatricopeptide repeat-containing protein At1g71460, chloroplastic pentatricopeptide repeat-containing protein At1g71460, chloroplastic pentatricopeptide repeat-containing protein At1g71460, chloroplastic pentatricopeptide repeat-containing protein At1g71460, chloroplastic-like pentatricopeptide repeat-containing protein At1g71460, chloroplastic-like pentatricopeptide repeat-containing protein At1g71460, chloroplastic Pentatricopeptide repeat-containing protein chloroplastic pentatricopeptide repeat-containing protein At1g71460, chloroplastic-like pentatricopeptide repeat-containing protein At1g71460, chloroplastic pentatricopeptide repeat-containing protein At1g71460, chloroplastic pentatricopeptide repeat-containing protein At1g71460, chloroplastic pentatricopeptide repeat-containing protein At1g71460, chloroplastic
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00970 Aminoacyl-tRNA biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 2
nta04141 Protein processing in endoplasmic reticulum 2
nta04144 Endocytosis 2
nta00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00230 Purine metabolism 2
hvu01232 Nucleotide metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00860 Porphyrin metabolism 4
sbi01240 Biosynthesis of cofactors 4
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 843487 103831667 106406679 106354149 107914200 107957635 102616684 100809249 100248221 7455263 11420489 101249382 107762596 107829236 107279790 100274147 123102799 123119947 123397534 8084800 100830246
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