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Orthologous genes in OrthoFinder**

Species Gene Description
 ppo-u.5   7455263   pentatricopeptide repeat-containing protein At1g71460, chloroplastic 
 ppo-r.4   7455263   pentatricopeptide repeat-containing protein At1g71460, chloroplastic 
 ppo-m.4   7455263   pentatricopeptide repeat-containing protein At1g71460, chloroplastic 
 gma-u.5   100809249   pentatricopeptide repeat-containing protein At1g71460, chloroplastic 
 mtr-u.5   11420489   pentatricopeptide repeat-containing protein At1g71460, chloroplastic 
 ath-u.5   AT1G71460   Pentatricopeptide repeat (PPR-like) superfamily protein 
 vvi-u.5   100248221   pentatricopeptide repeat-containing protein At1g71460, chloroplastic 
 sly-u.5   101249382   pentatricopeptide repeat-containing protein At1g71460, chloroplastic 
 osa-u.5   107279790   pentatricopeptide repeat-containing protein At1g71460, chloroplastic 
 zma-u.5   100274147   Pentatricopeptide repeat-containing protein chloroplastic 

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Top 50 coexpressed genes to 7455263 (ppo-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 7455263 (ppo-u.5 coexpression data)

CoexMap"7455263"


ppoLOC7455263 | Entrez gene ID : 7455263    
Species ppo gma mtr ath vvi sly osa zma sbi nta bra cre hvu cit bdi sot tae bna ghi
Paralog 3 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0009451 [list] [network] RNA modification  (384 genes)  IEA  
GO CC
GO MF
GO:0003723 [list] [network] RNA binding  (1480 genes)  IEA  
GO:0005515 [list] [network] protein binding  (4916 genes)  IEA  
Protein XP_002325518.4 [sequence] [blastp]
Subcellular
localization
wolf
chlo 6,  nucl 2,  cyto 1,  cysk 1  (predict for XP_002325518.4)
Subcellular
localization
TargetP
chlo 5,  other 4  (predict for XP_002325518.4)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ppo-u.5
for
7455263

.
ppo-r.4
for
7455263

.
ppo-m.4
for
7455263

.
gma-u.5
for
100809249

.
mtr-u.5
for
11420489

.
ath-u.5
for
AT1G71460

.
vvi-u.5
for
100248221

.
sly-u.5
for
101249382

.
osa-u.5
for
107279790

.
zma-u.5
for
100274147

.


Ortholog ID: 12047
Species ath gma sly osa zma bra vvi ppo mtr tae tae hvu ghi ghi bna bna sbi cit bdi nta nta
Symbol AT1G71460 LOC100809249 LOC101249382 LOC107279790 LOC100274147 LOC103831667 LOC100248221 LOC7455263 LOC11420489 LOC123119947 LOC123102799 LOC123397534 LOC107957635 LOC107914200 LOC106406679 LOC106354149 LOC8084800 LOC102616684 LOC100830246 LOC107762596 LOC107829236
Function* Pentatricopeptide repeat (PPR-like) superfamily protein pentatricopeptide repeat-containing protein At1g71460, chloroplastic pentatricopeptide repeat-containing protein At1g71460, chloroplastic pentatricopeptide repeat-containing protein At1g71460, chloroplastic Pentatricopeptide repeat-containing protein chloroplastic pentatricopeptide repeat-containing protein At1g71460, chloroplastic pentatricopeptide repeat-containing protein At1g71460, chloroplastic pentatricopeptide repeat-containing protein At1g71460, chloroplastic pentatricopeptide repeat-containing protein At1g71460, chloroplastic pentatricopeptide repeat-containing protein At1g71460, chloroplastic pentatricopeptide repeat-containing protein At1g71460, chloroplastic-like pentatricopeptide repeat-containing protein At1g71460, chloroplastic pentatricopeptide repeat-containing protein At1g71460, chloroplastic-like pentatricopeptide repeat-containing protein At1g71460, chloroplastic pentatricopeptide repeat-containing protein At1g71460, chloroplastic-like pentatricopeptide repeat-containing protein At1g71460, chloroplastic pentatricopeptide repeat-containing protein At1g71460, chloroplastic pentatricopeptide repeat-containing protein At1g71460, chloroplastic pentatricopeptide repeat-containing protein At1g71460, chloroplastic pentatricopeptide repeat-containing protein At1g71460, chloroplastic-like pentatricopeptide repeat-containing protein At1g71460, chloroplastic-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00230 Purine metabolism 2
hvu01232 Nucleotide metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00860 Porphyrin metabolism 4
sbi01240 Biosynthesis of cofactors 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00970 Aminoacyl-tRNA biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 2
nta04141 Protein processing in endoplasmic reticulum 2
nta04144 Endocytosis 2
nta00970 Aminoacyl-tRNA biosynthesis 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 843487 100809249 101249382 107279790 100274147 103831667 100248221 7455263 11420489 123119947 123102799 123397534 107957635 107914200 106406679 106354149 8084800 102616684 100830246 107762596 107829236
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