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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.9   CP12-3   CP12 domain-containing protein 3 
 ath-u.5   CP12-3   CP12 domain-containing protein 3 
 ath-r.7   CP12-3   CP12 domain-containing protein 3 
 ath-e.2   CP12-3   CP12 domain-containing protein 3 
 ath-m.4.bio   CP12-3   CP12 domain-containing protein 3 
 ath-m.4.hor   CP12-3   CP12 domain-containing protein 3 
 ath-m.4.lig   CP12-3   CP12 domain-containing protein 3 
 ath-m.4.str   CP12-3   CP12 domain-containing protein 3 
 ath-m.4.tis   CP12-3   CP12 domain-containing protein 3 
 bra-r.6   103832119   calvin cycle protein CP12-3, chloroplastic 
 bna-r.1   106421573   calvin cycle protein CP12-3, chloroplastic 
 bna-r.1   106427310   calvin cycle protein CP12-3, chloroplastic 
 ghi-r.1   107896365   calvin cycle protein CP12-3, chloroplastic 
 ghi-r.1   107904409   calvin cycle protein CP12-3, chloroplastic 
 ghi-r.1   107904800   calvin cycle protein CP12-3, chloroplastic 
 vvi-u.5   100251226   calvin cycle protein CP12-3, chloroplastic 
 ppo-u.5   7471735   calvin cycle protein CP12-3, chloroplastic 
 sly-u.5   109120159   calvin cycle protein CP12-3, chloroplastic 
 sot-r.1   102589731   calvin cycle protein CP12-3, chloroplastic 
 osa-u.5   9268681   calvin cycle protein CP12-3, chloroplastic 
 sbi-r.1   8057901   calvin cycle protein CP12-3, chloroplastic 

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Top 50 coexpressed genes to CP12-3 (ath-m.9 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CP12-3 (ath-m.9 coexpression data)

CoexMap"843989"


athCP12-3 | Entrez gene ID : 843989      
Species ath bra bna ghi vvi ppo sly sot osa sbi bdi nta tae zma cre mtr hvu gma cit
Paralog 9 1 2 3 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0080153 [list] [network] negative regulation of reductive pentose-phosphate cycle  (3 genes)  IDA  
GO:0071454 [list] [network] cellular response to anoxia  (4 genes)  IEP  
GO:0070417 [list] [network] cellular response to cold  (38 genes)  IEP  
GO:0034605 [list] [network] cellular response to heat  (50 genes)  IEP  
GO:0009416 [list] [network] response to light stimulus  (776 genes)  IEP  
GO CC
GO:0032991 [list] [network] protein-containing complex  (1548 genes)  IDA  
GO:0009507 [list] [network] chloroplast  (5014 genes)  IDA ISM  
GO MF
GO:0016151 [list] [network] nickel cation binding  (7 genes)  ISS  
GO:0005507 [list] [network] copper ion binding  (134 genes)  ISS  
Protein NP_565134.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 9  (predict for NP_565134.1)
Subcellular
localization
TargetP
chlo 8,  mito 4  (predict for NP_565134.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.9
for
CP12-3
ath-u.5
for
CP12-3
ath-r.7
for
CP12-3
ath-e.2
for
CP12-3
ath-m.4.bio
for
CP12-3
ath-m.4.hor
for
CP12-3
ath-m.4.lig
for
CP12-3
ath-m.4.str
for
CP12-3
ath-m.4.tis
for
CP12-3
bra-r.6
for
103832119
bna-r.1
for
106421573
bna-r.1
for
106427310
ghi-r.1
for
107896365
ghi-r.1
for
107904409
ghi-r.1
for
107904800
vvi-u.5
for
100251226
ppo-u.5
for
7471735
sly-u.5
for
109120159
sot-r.1
for
102589731
osa-u.5
for
9268681
sbi-r.1
for
8057901


Ortholog ID: 13487
Species ath bra bna bna ghi ghi ghi vvi ppo sly sot osa sbi
Symbol CP12-3 LOC103832119 LOC106421573 LOC106427310 LOC107904800 LOC107904806 LOC107915278 LOC100251226 LOC7471735 LOC109120159 LOC102589731 LOC9268681 LOC8057901
Function* CP12 domain-containing protein 3 calvin cycle protein CP12-3, chloroplastic calvin cycle protein CP12-3, chloroplastic calvin cycle protein CP12-3, chloroplastic calvin cycle protein CP12-3, chloroplastic calvin cycle protein CP12-3, chloroplastic calvin cycle protein CP12-3, chloroplastic calvin cycle protein CP12-3, chloroplastic calvin cycle protein CP12-3, chloroplastic calvin cycle protein CP12-3, chloroplastic calvin cycle protein CP12-3, chloroplastic calvin cycle protein CP12-3, chloroplastic calvin cycle protein CP12-3, chloroplastic
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00966 Glucosinolate biosynthesis 3
ath00380 Tryptophan metabolism 2
ath01210 2-Oxocarboxylic acid metabolism 2
ath00230 Purine metabolism 2
ath00920 Sulfur metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04141 Protein processing in endoplasmic reticulum 4
bra04626 Plant-pathogen interaction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04016 MAPK signaling pathway - plant 3
bna04075 Plant hormone signal transduction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04016 MAPK signaling pathway - plant 3
bna04075 Plant hormone signal transduction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00195 Photosynthesis 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00510 N-Glycan biosynthesis 2
ppo00513 Various types of N-glycan biosynthesis 2
ppo04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04120 Ubiquitin mediated proteolysis 5
sot03083 Polycomb repressive complex 2
sot04141 Protein processing in endoplasmic reticulum 2
sot03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04141 Protein processing in endoplasmic reticulum 2
osa04145 Phagosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00500 Starch and sucrose metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 843989 103832119 106421573 106427310 107904800 107904806 107915278 100251226 7471735 109120159 102589731 9268681 8057901
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