ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
ath-m.9	VHA-A	vacuolar ATP synthase subunit A
ath-u.5	VHA-A	vacuolar ATP synthase subunit A
ath-r.7	VHA-A	vacuolar ATP synthase subunit A
ath-e.2	VHA-A	vacuolar ATP synthase subunit A
ath-m.4.bio	VHA-A	vacuolar ATP synthase subunit A
ath-m.4.hor	VHA-A	vacuolar ATP synthase subunit A
ath-m.4.lig	VHA-A	vacuolar ATP synthase subunit A
ath-m.4.str	VHA-A	vacuolar ATP synthase subunit A
ath-m.4.tis	VHA-A	vacuolar ATP synthase subunit A
bra-r.6	103853150	V-type proton ATPase catalytic subunit A
bra-r.6	103832367	V-type proton ATPase catalytic subunit A
bra-r.6	103830510	V-type proton ATPase catalytic subunit A
bna-r.1	106405672	V-type proton ATPase catalytic subunit A
bna-r.1	106438778	V-type proton ATPase catalytic subunit A-like
bna-r.1	125602010	V-type proton ATPase catalytic subunit A-like
ghi-r.1	107925070	V-type proton ATPase catalytic subunit A-like
ghi-r.1	107930394	V-type proton ATPase catalytic subunit A
ghi-r.1	107958489	V-type proton ATPase catalytic subunit A-like
cit-r.1	102578066	V-type proton ATPase catalytic subunit A
gma-u.5	100775727	V-type proton ATPase catalytic subunit A-like
gma-u.5	100814929	V-type proton ATPase catalytic subunit A
vvi-u.5	100261512	V-type proton ATPase catalytic subunit A
vvi-u.5	100266369	V-type proton ATPase catalytic subunit A
ppo-u.5	7497778	V-type proton ATPase catalytic subunit A
ppo-u.5	7455516	V-type proton ATPase catalytic subunit A
mtr-u.5	25491171	V-type proton ATPase catalytic subunit A
sly-u.5	543861	vacuolar H+-ATPase A1 subunit isoform
sly-u.5	543862	vacuolar H+-ATPase A2 subunit isoform
sot-r.1	102582778	V-type proton ATPase catalytic subunit A-like
sot-r.1	102591413	V-type proton ATPase catalytic subunit A
nta-r.1	107827110	V-type proton ATPase catalytic subunit A
nta-r.1	107818091	V-type proton ATPase catalytic subunit A
nta-r.1	107782425	V-type proton ATPase catalytic subunit A
osa-u.5	4341751	V-type proton ATPase catalytic subunit A
osa-u.5	4328470	V-type proton ATPase catalytic subunit A
zma-u.5	542327	vacuolar proton pump 3
zma-u.5	103626681	V-type proton ATPase catalytic subunit A-like
tae-r.2	780589	V-type proton ATPase catalytic subunit A
tae-r.2	123168988	V-type proton ATPase catalytic subunit A
tae-r.2	123149306	V-type proton ATPase catalytic subunit A
hvu-r.1	123413431	V-type proton ATPase catalytic subunit A
sbi-r.1	8069380	V-type proton ATPase catalytic subunit A
sbi-r.1	8076129	V-type proton ATPase catalytic subunit A
bdi-r.1	100842214	V-type proton ATPase catalytic subunit A
bdi-r.1	100837180	V-type proton ATPase catalytic subunit A
cre-r.1	CHLRE_10g461050v5	uncharacterized protein

Top 50 coexpressed genes to VHA-A (ath-m.9 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to VHA-A (ath-m.9 coexpression data)

CoexMap"844228"

[Cytoscape]

Annotation

functional annotation

KEGG

ath00190 [list] [network] Oxidative phosphorylation (170 genes)

ath04145 [list] [network] Phagosome (87 genes)

GO BP

GO:0007030 [list] [network] Golgi organization	(17 genes)	IMP
GO:0009555 [list] [network] pollen development	(385 genes)	IMP

GO CC

GO:0033180 [list] [network] proton-transporting V-type ATPase, V1 domain	(6 genes)	IEA
GO:0005774 [list] [network] vacuolar membrane	(164 genes)	HDA
GO:0009505 [list] [network] plant-type cell wall	(504 genes)	HDA
GO:0009941 [list] [network] chloroplast envelope	(585 genes)	HDA
GO:0000325 [list] [network] plant-type vacuole	(788 genes)	HDA
GO:0009506 [list] [network] plasmodesma	(874 genes)	HDA
GO:0005773 [list] [network] vacuole	(984 genes)	HDA
GO:0005794 [list] [network] Golgi apparatus	(1198 genes)	HDA
GO:0005829 [list] [network] cytosol	(2593 genes)	HDA RCA
GO:0005886 [list] [network] plasma membrane	(2598 genes)	HDA
GO:0005739 [list] [network] mitochondrion	(4244 genes)	HDA
GO:0009507 [list] [network] chloroplast	(5014 genes)	HDA
GO:0005737 [list] [network] cytoplasm	(14000 genes)	ISM

GO MF

GO:0002020 [list] [network] protease binding

(7 genes)

IPI

Protein

NP_001031299.1 [sequence] [blastp]
NP_178011.1 [sequence] [blastp]

Subcellular
localization
wolf

cyto 8, pero 1	(predict for NP_001031299.1)
cyto 8, pero 1	(predict for NP_178011.1)

Subcellular
localization
TargetP

other 9	(predict for NP_001031299.1)
other 9	(predict for NP_178011.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target				Condition-specific^*					Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ath-m.9 for VHA-A	ath-u.5 for VHA-A	ath-r.7 for VHA-A	ath-e.2 for VHA-A	ath-m.4.bio for VHA-A	ath-m.4.hor for VHA-A	ath-m.4.lig for VHA-A	ath-m.4.str for VHA-A	ath-m.4.tis for VHA-A	bra-r.6 for 103853150	bra-r.6 for 103832367	bra-r.6 for 103830510	bna-r.1 for 106405672	bna-r.1 for 106438778	bna-r.1 for 125602010	ghi-r.1 for 107925070	ghi-r.1 for 107930394	ghi-r.1 for 107958489	cit-r.1 for 102578066	gma-u.5 for 100775727	gma-u.5 for 100814929	vvi-u.5 for 100261512	vvi-u.5 for 100266369	ppo-u.5 for 7497778	ppo-u.5 for 7455516	mtr-u.5 for 25491171	sly-u.5 for 543861	sly-u.5 for 543862	sot-r.1 for 102582778	sot-r.1 for 102591413	nta-r.1 for 107827110	nta-r.1 for 107818091	nta-r.1 for 107782425	osa-u.5 for 4341751	osa-u.5 for 4328470	zma-u.5 for 542327	zma-u.5 for 103626681	tae-r.2 for 780589	tae-r.2 for 123168988	tae-r.2 for 123149306	hvu-r.1 for 123413431	sbi-r.1 for 8069380	sbi-r.1 for 8076129	bdi-r.1 for 100842214	bdi-r.1 for 100837180	cre-r.1 for CHLRE_10g461050v5

Ortholog

Ortholog ID: 4320

Species

ath

bra

bna

ghi

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

VHA-A

Function^*

vacuolar ATP synthase subunit A