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Orthologous genes in OrthoFinder**

Species Gene Description
 ppo-m.4   7454874   pentatricopeptide repeat-containing protein At4g28010 
 ppo-u.5   7454874   pentatricopeptide repeat-containing protein At4g28010 
 ppo-r.4   7454874   pentatricopeptide repeat-containing protein At4g28010 
 gma-u.5   100811878   pentatricopeptide repeat-containing protein At4g28010 
 mtr-u.5   11408637   pentatricopeptide repeat-containing protein At4g28010 
 ath-u.5   AT4G28010   Tetratricopeptide repeat (TPR)-like superfamily protein 
 vvi-u.5   100263764   pentatricopeptide repeat-containing protein At4g28010 
 bna-r.1   106376259   pentatricopeptide repeat-containing protein At4g28010-like 
 bna-r.1   106450738   pentatricopeptide repeat-containing protein At4g28010 
 cit-r.1   102628797   pentatricopeptide repeat-containing protein At4g28010 
 sly-u.5   101247237   pentatricopeptide repeat-containing protein At4g28010 
 sot-r.1   102598477   pentatricopeptide repeat-containing protein At4g28010 
 nta-r.1   107763762   uncharacterized LOC107763762 
 nta-r.1   107787202   uncharacterized LOC107787202 
 nta-r.1   107811040   uncharacterized LOC107811040 

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Top 50 coexpressed genes to 7454874 (ppo-m.4 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 7454874 (ppo-m.4 coexpression data)

CoexMap"7454874"


ppoLOC7454874 | Entrez gene ID : 7454874    
Species ppo gma mtr ath vvi bna cit sly sot nta cre bra hvu tae bdi osa zma ghi sbi
Paralog 3 1 1 1 1 2 1 1 1 3 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO MF
GO:0005515 [list] [network] protein binding  (4916 genes)  IEA  
Protein XP_002313262.4 [sequence] [blastp]
Subcellular
localization
wolf
chlo 5,  mito 2,  nucl 1,  cyto 1,  extr 1,  E.R. 1,  cyto_nucl 1,  cyto_E.R. 1  (predict for XP_002313262.4)
Subcellular
localization
TargetP
mito 3  (predict for XP_002313262.4)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ppo-m.4
for
7454874
ppo-u.5
for
7454874
ppo-r.4
for
7454874
gma-u.5
for
100811878
mtr-u.5
for
11408637
ath-u.5
for
AT4G28010
vvi-u.5
for
100263764
bna-r.1
for
106376259
bna-r.1
for
106450738
cit-r.1
for
102628797
sly-u.5
for
101247237
sot-r.1
for
102598477
nta-r.1
for
107763762
nta-r.1
for
107787202
nta-r.1
for
107811040


Ortholog ID: 12918
Species ppo gma mtr ath vvi bna bna cit sly sot nta nta nta
Symbol LOC7454874 LOC100811878 LOC11408637 AT4G28010 LOC100263764 LOC106376259 LOC106450738 LOC102628797 LOC101247237 LOC102598477 LOC107763762 LOC107787202 LOC107813185
Function* pentatricopeptide repeat-containing protein At4g28010 pentatricopeptide repeat-containing protein At4g28010 pentatricopeptide repeat-containing protein At4g28010 Tetratricopeptide repeat (TPR)-like superfamily protein pentatricopeptide repeat-containing protein At4g28010 pentatricopeptide repeat-containing protein At4g28010-like pentatricopeptide repeat-containing protein At4g28010 pentatricopeptide repeat-containing protein At4g28010 pentatricopeptide repeat-containing protein At4g28010 pentatricopeptide repeat-containing protein At4g28010 uncharacterized LOC107763762 uncharacterized LOC107787202 uncharacterized LOC107813185
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03008 Ribosome biogenesis in eukaryotes 5
bna03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03008 Ribosome biogenesis in eukaryotes 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03022 Basal transcription factors 3
nta03420 Nucleotide excision repair 3
nta03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04016 MAPK signaling pathway - plant 2
nta03082 ATP-dependent chromatin remodeling 2
nta03022 Basal transcription factors 2
nta03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00561 Glycerolipid metabolism 2
nta00350 Tyrosine metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 7454874 100811878 11408637 828915 100263764 106376259 106450738 102628797 101247237 102598477 107763762 107787202 107813185
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