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Orthologous genes in OrthoFinder**

Species Gene Description
 sly-u.5   101247237   pentatricopeptide repeat-containing protein At4g28010 
 sly-r.6   101247237   pentatricopeptide repeat-containing protein At4g28010 
 ath-u.5   AT4G28010   Tetratricopeptide repeat (TPR)-like superfamily protein 
 gma-u.5   100811878   pentatricopeptide repeat-containing protein At4g28010 
 vvi-u.5   100263764   pentatricopeptide repeat-containing protein At4g28010 
 ppo-u.5   7454874   pentatricopeptide repeat-containing protein At4g28010 
 mtr-u.5   11408637   pentatricopeptide repeat-containing protein At4g28010 

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Top 50 coexpressed genes to 101247237 (sly-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 101247237 (sly-u.5 coexpression data)

CoexMap"101247237"


slyLOC101247237 | Entrez gene ID : 101247237    
Species sly ath gma vvi ppo mtr hvu osa sot tae nta bra cit ghi zma bna bdi sbi cre
Paralog 2 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO MF
GO:0005515 [list] [network] protein binding  (3982 genes)  IEA  
Protein XP_004244115.1 [sequence] [blastp]
XP_010324314.1 [sequence] [blastp]
XP_010324315.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 6,  chlo_mito 4,  extr 2,  mito 1  (predict for XP_004244115.1)
chlo 6,  chlo_mito 4,  extr 2,  mito 1  (predict for XP_010324314.1)
chlo 6,  chlo_mito 4,  extr 2,  mito 1  (predict for XP_010324315.1)
Subcellular
localization
TargetP
scret 6  (predict for XP_004244115.1)
scret 6  (predict for XP_010324314.1)
scret 6  (predict for XP_010324315.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

sly-u.5
for
101247237

.
sly-r.6
for
101247237

.
ath-u.5
for
AT4G28010

.
gma-u.5
for
100811878

.
vvi-u.5
for
100263764

.
ppo-u.5
for
7454874

.
mtr-u.5
for
11408637

.


Ortholog ID: 12918
Species ath gma sly vvi ppo mtr bna bna sot cit nta nta
Symbol AT4G28010 LOC100811878 LOC101247237 LOC100263764 LOC7454874 LOC11408637 LOC106450738 LOC106376259 LOC102598477 LOC102628797 LOC107763762 LOC107813185
Function* Tetratricopeptide repeat (TPR)-like superfamily protein pentatricopeptide repeat-containing protein At4g28010 pentatricopeptide repeat-containing protein At4g28010 pentatricopeptide repeat-containing protein At4g28010 pentatricopeptide repeat-containing protein At4g28010 pentatricopeptide repeat-containing protein At4g28010 pentatricopeptide repeat-containing protein At4g28010 pentatricopeptide repeat-containing protein At4g28010-like pentatricopeptide repeat-containing protein At4g28010 pentatricopeptide repeat-containing protein At4g28010 uncharacterized LOC107763762 uncharacterized LOC107813185
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03008 Ribosome biogenesis in eukaryotes 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03008 Ribosome biogenesis in eukaryotes 5
bna03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03022 Basal transcription factors 3
nta03420 Nucleotide excision repair 3
nta03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00561 Glycerolipid metabolism 2
nta00350 Tyrosine metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 828915 100811878 101247237 100263764 7454874 11408637 106450738 106376259 102598477 102628797 107763762 107813185
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