ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
ppo-m.4	7457775	protein JOKA2
ppo-u.5	7457775	protein JOKA2
ppo-r.4	7457775	protein JOKA2
ppo-u.5	7484413	protein JOKA2
gma-u.5	100816395	protein NBR1 homolog
gma-u.5	100778692	protein JOKA2
mtr-u.5	25493711	protein JOKA2
ath-u.5	NBR1	ubiquitin-associated (UBA)/TS-N domain-containing protein / octicosapeptide/Phox/Bemp1 (PB1) domain-containing protein
bra-r.6	103862466	protein NBR1 homolog
bra-r.6	103861501	protein NBR1 homolog
bra-r.6	103834897	protein NBR1 homolog
vvi-u.5	100253588	protein JOKA2
ghi-r.1	107949640	protein NBR1 homolog
ghi-r.1	107937455	protein JOKA2
ghi-r.1	107924432	protein NBR1 homolog
bna-r.1	106442225	protein NBR1 homolog
bna-r.1	106440775	protein NBR1 homolog
bna-r.1	111208195	protein NBR1 homolog
cit-r.1	102622663	protein NBR1 homolog
sly-u.5	101254702	protein JOKA2
sly-u.5	101268268	protein JOKA2
sot-r.1	102582603	protein NBR1 homolog
sot-r.1	102585254	protein NBR1 homolog
nta-r.1	107781766	protein JOKA2
nta-r.1	107791306	protein JOKA2
nta-r.1	107828388	protein JOKA2
osa-u.5	4329846	protein NBR1 homolog
osa-u.5	4336158	protein NBR1 homolog
zma-u.5	103648570	protein NBR1 homolog
zma-u.5	100275089	Protein NBR1-like protein
tae-r.2	123137309	protein JOKA2
tae-r.2	123189527	protein NBR1 homolog
tae-r.2	123045753	protein NBR1 homolog
hvu-r.1	123403910	protein NBR1 homolog
hvu-r.1	123427004	protein NBR1 homolog
sbi-r.1	8073586	protein NBR1 homolog
sbi-r.1	8070589	protein NBR1 homolog
bdi-r.1	100838446	protein NBR1 homolog
bdi-r.1	100826577	protein NBR1 homolog

Top 50 coexpressed genes to 7457775 (ppo-m.4 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 7457775 (ppo-m.4 coexpression data)

CoexMap"7457775"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO CC

GO MF

GO:0008270 [list] [network] zinc ion binding	(777 genes)	IEA
GO:0005515 [list] [network] protein binding	(4916 genes)	IEA

Protein

XP_006374541.1 [sequence] [blastp]
XP_024442409.1 [sequence] [blastp]
XP_024442410.1 [sequence] [blastp]
XP_024442411.1 [sequence] [blastp]
XP_024442412.1 [sequence] [blastp]
XP_052303611.1 [sequence] [blastp]

Subcellular
localization
wolf

cyto 4, chlo 3, nucl 2, cyto_pero 2, cyto_E.R. 2, cyto_plas 2	(predict for XP_006374541.1)
cyto 4, chlo 3, nucl 2, cyto_pero 2, cyto_E.R. 2, cyto_plas 2	(predict for XP_024442409.1)
cyto 4, chlo 3, nucl 2, cyto_pero 2, cyto_E.R. 2, cyto_plas 2	(predict for XP_024442410.1)
cyto 4, chlo 3, nucl 2, cyto_pero 2, cyto_E.R. 2, cyto_plas 2	(predict for XP_024442411.1)
cyto 5, chlo 3, nucl 2	(predict for XP_024442412.1)
cyto 4, chlo 3, nucl 2, cyto_pero 2, cyto_E.R. 2, cyto_plas 2	(predict for XP_052303611.1)

Subcellular
localization
TargetP

other 9	(predict for XP_006374541.1)
other 9	(predict for XP_024442409.1)
other 9	(predict for XP_024442410.1)
other 9	(predict for XP_024442411.1)
other 9	(predict for XP_024442412.1)
other 9	(predict for XP_052303611.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target			Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ppo-m.4 for 7457775	ppo-u.5 for 7457775	ppo-r.4 for 7457775	ppo-u.5 for 7484413	gma-u.5 for 100816395	gma-u.5 for 100778692	mtr-u.5 for 25493711	ath-u.5 for NBR1	bra-r.6 for 103862466	bra-r.6 for 103861501	bra-r.6 for 103834897	vvi-u.5 for 100253588	ghi-r.1 for 107949640	ghi-r.1 for 107937455	ghi-r.1 for 107924432	bna-r.1 for 106442225	bna-r.1 for 106440775	bna-r.1 for 111208195	cit-r.1 for 102622663	sly-u.5 for 101254702	sly-u.5 for 101268268	sot-r.1 for 102582603	sot-r.1 for 102585254	nta-r.1 for 107781766	nta-r.1 for 107791306	nta-r.1 for 107828388	osa-u.5 for 4329846	osa-u.5 for 4336158	zma-u.5 for 103648570	zma-u.5 for 100275089	tae-r.2 for 123137309	tae-r.2 for 123189527	tae-r.2 for 123045753	hvu-r.1 for 123403910	hvu-r.1 for 123427004	sbi-r.1 for 8073586	sbi-r.1 for 8070589	bdi-r.1 for 100838446	bdi-r.1 for 100826577

Ortholog

Ortholog ID: 3964

Species

ppo

gma

mtr

ath

bra

vvi

ghi

bna

cit

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

Symbol

NBR1

Function^*

protein JOKA2

protein NBR1 homolog

protein JOKA2

ubiquitin-associated (UBA)/TS-N domain-containing protein / octicosapeptide/Phox/Bemp1 (PB1) domain-containing protein

protein NBR1 homolog

protein JOKA2

protein NBR1 homolog

protein JOKA2

protein NBR1 homolog

protein JOKA2

protein NBR1 homolog

protein JOKA2

protein NBR1 homolog

Protein NBR1-like protein

protein JOKA2

protein NBR1 homolog

Coexmap

Please wait a moment.

Coexpression

Please wait a moment.

KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo00190	Oxidative phosphorylation	3
ppo04145	Phagosome	3
ppo04142	Lysosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04141	Protein processing in endoplasmic reticulum	3
gma04142	Lysosome	2
gma04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04141	Protein processing in endoplasmic reticulum	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04141	Protein processing in endoplasmic reticulum	4
ath03050	Proteasome	3
ath04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04144	Endocytosis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04144	Endocytosis	5
bra03250	Viral life cycle - HIV-1	2
bra03272	Virion - Hepatitis viruses	2
bra04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00071	Fatty acid degradation	4
bra01212	Fatty acid metabolism	4
bra00592	alpha-Linolenic acid metabolism	3
bra04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03018	RNA degradation	4
ghi04120	Ubiquitin mediated proteolysis	2
ghi04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00562	Inositol phosphate metabolism	2
ghi03018	RNA degradation	2
ghi04120	Ubiquitin mediated proteolysis	2
ghi04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03018	RNA degradation	4
ghi04120	Ubiquitin mediated proteolysis	2
ghi04141	Protein processing in endoplasmic reticulum	2
ghi00562	Inositol phosphate metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04016	MAPK signaling pathway - plant	6
bna04075	Plant hormone signal transduction	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03050	Proteasome	6
cit04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04141	Protein processing in endoplasmic reticulum	5
nta03050	Proteasome	4
nta04120	Ubiquitin mediated proteolysis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04141	Protein processing in endoplasmic reticulum	5
nta03050	Proteasome	4
nta04120	Ubiquitin mediated proteolysis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00020	Citrate cycle (TCA cycle)	3
tae01200	Carbon metabolism	3
tae01210	2-Oxocarboxylic acid metabolism	3
tae01230	Biosynthesis of amino acids	3
tae03250	Viral life cycle - HIV-1	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04016	MAPK signaling pathway - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04016	MAPK signaling pathway - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu01200	Carbon metabolism	2
hvu03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03040	Spliceosome	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04136	Autophagy - other	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03040	Spliceosome	4
bdi04075	Plant hormone signal transduction	2
bdi04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04141	Protein processing in endoplasmic reticulum	2

Expression

Expression pattern

Entrez Gene ID^*

7457775

7484413

100816395

100778692

25493711

828571

103862466

103861501

103834897

100253588

107949640

107937455

107886212

106440775

111208195

106427403

102622663

101254702

101268268

102582603

102585254

107781766

107791306

107828388

4329846

4336158

103648570

100275089

123137309

123189527

123053635

123403910

123427004

8073586

8070589

100838446

100826577

The preparation time of this page was 0.2 [sec].


Species	ppo	gma	mtr	ath	bra	vvi	ghi	bna	cit	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	4	2	1	1	3	1	3	3	1	2	2	3	2	2	3	2	2	2	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 7457775 (ppo-m.4 coexpression data)

Top 50 enrichment test to 7457775 (ppo-m.4 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**