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Orthologous genes in OrthoFinder**

Species Gene Description
 ppo-m.4   7465461   phosphoribulokinase, chloroplastic 
 ppo-u.5   7465461   phosphoribulokinase, chloroplastic 
 ppo-r.4   7465461   phosphoribulokinase, chloroplastic 
 ppo-u.5   18094096   phosphoribulokinase, chloroplastic 
 gma-u.5   100777515   phosphoribulokinase, chloroplastic 
 gma-u.5   100807126   phosphoribulokinase, chloroplastic 
 mtr-u.5   11412336   phosphoribulokinase, chloroplastic 
 ath-u.5   PRK   phosphoribulokinase 
 bra-r.6   103840194   phosphoribulokinase, chloroplastic 
 bra-r.6   103868914   phosphoribulokinase, chloroplastic 
 bra-r.6   103833678   phosphoribulokinase, chloroplastic 
 vvi-u.5   100244092   phosphoribulokinase, chloroplastic 
 ghi-r.1   107938584   phosphoribulokinase, chloroplastic 
 ghi-r.1   107946792   phosphoribulokinase, chloroplastic 
 ghi-r.1   107946652   phosphoribulokinase, chloroplastic 
 bna-r.1   125574834   phosphoribulokinase, chloroplastic-like 
 bna-r.1   125596123   phosphoribulokinase, chloroplastic 
 bna-r.1   125603616   phosphoribulokinase, chloroplastic 
 cit-r.1   102612734   phosphoribulokinase, chloroplastic 
 sly-u.5   101255322   phosphoribulokinase, chloroplastic 
 sot-r.1   102591470   phosphoribulokinase, chloroplastic 
 nta-r.1   107831114   phosphoribulokinase, chloroplastic 
 nta-r.1   107773234   phosphoribulokinase, chloroplastic 
 nta-r.1   107830375   phosphoribulokinase, chloroplastic 
 osa-u.5   4330413   phosphoribulokinase, chloroplastic 
 zma-u.5   100282845   Phosphoribulokinase 
 zma-u.5   100281866   Phosphoribulokinase 
 zma-u.5   100279820   uncharacterized LOC100279820 
 tae-r.2   123128079   phosphoribulokinase, chloroplastic-like 
 tae-r.2   123137868   phosphoribulokinase, chloroplastic-like 
 tae-r.2   543283   phosphoribulokinase, chloroplastic-like 
 hvu-r.1   123404301   phosphoribulokinase, chloroplastic 
 sbi-r.1   8071104   phosphoribulokinase, chloroplastic 
 sbi-r.1   110434320   phosphoribulokinase, chloroplastic 
 bdi-r.1   100837995   phosphoribulokinase, chloroplastic 
 cre-r.1   CHLRE_12g554800v5   uncharacterized protein 

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Top 50 coexpressed genes to 7465461 (ppo-m.4 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 7465461 (ppo-m.4 coexpression data)

CoexMap"7465461"


ppoLOC7465461 | Entrez gene ID : 7465461    
Species ppo gma mtr ath bra vvi ghi bna cit sly sot nta osa zma tae hvu sbi bdi cre
Paralog 4 2 1 1 3 1 3 3 1 1 1 3 1 3 3 1 2 1 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG pop00710 [list] [network] Carbon fixation by Calvin cycle (101 genes)
pop01200 [list] [network] Carbon metabolism (347 genes)
GO BP
GO:0005975 [list] [network] carbohydrate metabolic process  (863 genes)  IEA  
GO CC
GO:0009507 [list] [network] chloroplast  (718 genes)  IEA  
GO:0005737 [list] [network] cytoplasm  (6111 genes)  IEA  
GO MF
GO:0008974 [list] [network] phosphoribulokinase activity  (2 genes)  IEA  
GO:0005524 [list] [network] ATP binding  (2559 genes)  IEA  
Protein XP_002303455.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 9,  chlo_mito 5  (predict for XP_002303455.1)
Subcellular
localization
TargetP
chlo 7  (predict for XP_002303455.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ppo-m.4
for
7465461
ppo-u.5
for
7465461
ppo-r.4
for
7465461
ppo-u.5
for
18094096
gma-u.5
for
100777515
gma-u.5
for
100807126
mtr-u.5
for
11412336
ath-u.5
for
PRK
bra-r.6
for
103840194
bra-r.6
for
103868914
bra-r.6
for
103833678
vvi-u.5
for
100244092
ghi-r.1
for
107938584
ghi-r.1
for
107946792
ghi-r.1
for
107946652
bna-r.1
for
125574834
bna-r.1
for
125596123
bna-r.1
for
125603616
cit-r.1
for
102612734
sly-u.5
for
101255322
sot-r.1
for
102591470
nta-r.1
for
107831114
nta-r.1
for
107773234
nta-r.1
for
107830375
osa-u.5
for
4330413
zma-u.5
for
100282845
zma-u.5
for
100281866
zma-u.5
for
100279820
tae-r.2
for
123128079
tae-r.2
for
123137868
tae-r.2
for
543283
hvu-r.1
for
123404301
sbi-r.1
for
8071104
sbi-r.1
for
110434320
bdi-r.1
for
100837995
cre-r.1
for
CHLRE_12g554800v5


Ortholog ID: 4470
Species ppo ppo gma gma mtr ath bra bra bra vvi ghi ghi ghi bna bna bna cit sly sot nta nta nta osa zma zma zma tae tae tae hvu sbi sbi bdi cre
Symbol LOC7465461 LOC18094096 LOC100777515 LOC100807126 LOC11412336 PRK LOC103840194 LOC103868914 LOC103833678 LOC100244092 LOC107938584 LOC107946792 LOC107941387 LOC125603616 LOC106451744 LOC106451740 LOC102612734 LOC101255322 LOC102591470 LOC107831114 LOC107773234 LOC107761746 LOC4330413 LOC100282845 LOC100281866 LOC100279820 LOC123128079 LOC123137868 LOC543283 LOC123404301 LOC8071104 LOC110434320 LOC100837995 CHLRE_12g554800v5
Function* phosphoribulokinase, chloroplastic phosphoribulokinase, chloroplastic phosphoribulokinase, chloroplastic phosphoribulokinase, chloroplastic phosphoribulokinase, chloroplastic phosphoribulokinase phosphoribulokinase, chloroplastic phosphoribulokinase, chloroplastic phosphoribulokinase, chloroplastic phosphoribulokinase, chloroplastic phosphoribulokinase, chloroplastic phosphoribulokinase, chloroplastic phosphoribulokinase, chloroplastic phosphoribulokinase, chloroplastic phosphoribulokinase, chloroplastic phosphoribulokinase, chloroplastic phosphoribulokinase, chloroplastic phosphoribulokinase, chloroplastic phosphoribulokinase, chloroplastic phosphoribulokinase, chloroplastic phosphoribulokinase, chloroplastic phosphoribulokinase, chloroplastic-like phosphoribulokinase, chloroplastic Phosphoribulokinase Phosphoribulokinase uncharacterized LOC100279820 phosphoribulokinase, chloroplastic-like phosphoribulokinase, chloroplastic-like phosphoribulokinase, chloroplastic-like phosphoribulokinase, chloroplastic phosphoribulokinase, chloroplastic phosphoribulokinase, chloroplastic phosphoribulokinase, chloroplastic uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00195 Photosynthesis 4
ppo01200 Carbon metabolism 3
ppo00710 Carbon fixation by Calvin cycle 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00710 Carbon fixation by Calvin cycle 7
ppo01200 Carbon metabolism 7
ppo01230 Biosynthesis of amino acids 3
ppo00195 Photosynthesis 3
ppo00196 Photosynthesis - antenna proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00710 Carbon fixation by Calvin cycle 9
gma01200 Carbon metabolism 9
gma00195 Photosynthesis 3
gma00010 Glycolysis / Gluconeogenesis 2
gma00030 Pentose phosphate pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00710 Carbon fixation by Calvin cycle 11
gma01200 Carbon metabolism 11
gma00010 Glycolysis / Gluconeogenesis 5
gma00030 Pentose phosphate pathway 5
gma00051 Fructose and mannose metabolism 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr01200 Carbon metabolism 6
mtr00710 Carbon fixation by Calvin cycle 4
mtr00195 Photosynthesis 3
mtr00196 Photosynthesis - antenna proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath01200 Carbon metabolism 16
ath00710 Carbon fixation by Calvin cycle 11
ath00630 Glyoxylate and dicarboxylate metabolism 8
ath00260 Glycine, serine and threonine metabolism 3
ath01230 Biosynthesis of amino acids 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00195 Photosynthesis 9
bra00710 Carbon fixation by Calvin cycle 5
bra01200 Carbon metabolism 5
bra00190 Oxidative phosphorylation 2
bra00196 Photosynthesis - antenna proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra01200 Carbon metabolism 5
bra00630 Glyoxylate and dicarboxylate metabolism 4
bra00710 Carbon fixation by Calvin cycle 3
bra04146 Peroxisome 2
bra00020 Citrate cycle (TCA cycle) 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra01200 Carbon metabolism 7
bra00710 Carbon fixation by Calvin cycle 6
bra00010 Glycolysis / Gluconeogenesis 2
bra00030 Pentose phosphate pathway 2
bra00051 Fructose and mannose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi01200 Carbon metabolism 10
vvi00710 Carbon fixation by Calvin cycle 8
vvi00010 Glycolysis / Gluconeogenesis 3
vvi00030 Pentose phosphate pathway 3
vvi00051 Fructose and mannose metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00710 Carbon fixation by Calvin cycle 4
ghi01200 Carbon metabolism 4
ghi00910 Nitrogen metabolism 4
ghi01310 Nitrogen cycle 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00710 Carbon fixation by Calvin cycle 4
ghi01200 Carbon metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00710 Carbon fixation by Calvin cycle 4
ghi01200 Carbon metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00710 Carbon fixation by Calvin cycle 11
bna01200 Carbon metabolism 11
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00710 Carbon fixation by Calvin cycle 11
bna01200 Carbon metabolism 11
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00710 Carbon fixation by Calvin cycle 15
bna01200 Carbon metabolism 15
bna00010 Glycolysis / Gluconeogenesis 4
bna00030 Pentose phosphate pathway 4
bna00051 Fructose and mannose metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit01200 Carbon metabolism 10
cit00710 Carbon fixation by Calvin cycle 8
cit00010 Glycolysis / Gluconeogenesis 4
cit00620 Pyruvate metabolism 3
cit00030 Pentose phosphate pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly01200 Carbon metabolism 13
sly00710 Carbon fixation by Calvin cycle 11
sly00630 Glyoxylate and dicarboxylate metabolism 4
sly00010 Glycolysis / Gluconeogenesis 3
sly00030 Pentose phosphate pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot01200 Carbon metabolism 6
sot00710 Carbon fixation by Calvin cycle 5
sot00195 Photosynthesis 4
sot00010 Glycolysis / Gluconeogenesis 2
sot00030 Pentose phosphate pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 4
nta00860 Porphyrin metabolism 2
nta00710 Carbon fixation by Calvin cycle 2
nta01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00710 Carbon fixation by Calvin cycle 10
nta01200 Carbon metabolism 10
nta00630 Glyoxylate and dicarboxylate metabolism 6
nta00190 Oxidative phosphorylation 2
nta00195 Photosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00710 Carbon fixation by Calvin cycle 5
nta01200 Carbon metabolism 5
nta00010 Glycolysis / Gluconeogenesis 3
nta00030 Pentose phosphate pathway 3
nta00051 Fructose and mannose metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa01200 Carbon metabolism 9
osa00710 Carbon fixation by Calvin cycle 7
osa00630 Glyoxylate and dicarboxylate metabolism 4
osa00195 Photosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma01200 Carbon metabolism 12
zma00710 Carbon fixation by Calvin cycle 10
zma00630 Glyoxylate and dicarboxylate metabolism 4
zma00010 Glycolysis / Gluconeogenesis 3
zma00030 Pentose phosphate pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00710 Carbon fixation by Calvin cycle 2
zma01200 Carbon metabolism 2
zma00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00195 Photosynthesis 9
zma00710 Carbon fixation by Calvin cycle 6
zma01200 Carbon metabolism 6
zma00010 Glycolysis / Gluconeogenesis 2
zma00030 Pentose phosphate pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae01200 Carbon metabolism 7
tae00710 Carbon fixation by Calvin cycle 4
tae00260 Glycine, serine and threonine metabolism 3
tae00630 Glyoxylate and dicarboxylate metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00710 Carbon fixation by Calvin cycle 7
tae01200 Carbon metabolism 7
tae00195 Photosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae01200 Carbon metabolism 6
tae00710 Carbon fixation by Calvin cycle 4
tae00196 Photosynthesis - antenna proteins 2
tae00260 Glycine, serine and threonine metabolism 2
tae00630 Glyoxylate and dicarboxylate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu01200 Carbon metabolism 7
hvu00710 Carbon fixation by Calvin cycle 5
hvu00630 Glyoxylate and dicarboxylate metabolism 4
hvu00196 Photosynthesis - antenna proteins 4
hvu00260 Glycine, serine and threonine metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00195 Photosynthesis 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00195 Photosynthesis 8
sbi00196 Photosynthesis - antenna proteins 5
sbi00710 Carbon fixation by Calvin cycle 3
sbi01200 Carbon metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi01200 Carbon metabolism 5
bdi00630 Glyoxylate and dicarboxylate metabolism 4
bdi00710 Carbon fixation by Calvin cycle 4
bdi00260 Glycine, serine and threonine metabolism 2
bdi01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre00710 Carbon fixation by Calvin cycle 8
cre01200 Carbon metabolism 8
cre00030 Pentose phosphate pathway 5
cre00010 Glycolysis / Gluconeogenesis 4
cre01230 Biosynthesis of amino acids 4
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 7465461 18094096 100777515 100807126 11412336 840098 103840194 103868914 103833678 100244092 107938584 107946792 107941387 125603616 106451744 106451740 102612734 101255322 102591470 107831114 107773234 107761746 4330413 100282845 100281866 100279820 123128079 123137868 543283 123404301 8071104 110434320 100837995 5719722
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