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Orthologous genes in OrthoFinder**

Species Gene Description
 ppo-u.5   7465461   phosphoribulokinase, chloroplastic 
 ppo-r.4   7465461   phosphoribulokinase, chloroplastic 
 ppo-m.4   7465461   phosphoribulokinase, chloroplastic 
 ppo-u.5   18094096   phosphoribulokinase, chloroplastic 
 gma-u.5   100777515   phosphoribulokinase, chloroplastic 
 gma-u.5   100807126   phosphoribulokinase, chloroplastic 
 mtr-u.5   11412336   phosphoribulokinase, chloroplastic 
 ath-u.5   PRK   phosphoribulokinase 
 vvi-u.5   100244092   phosphoribulokinase, chloroplastic 
 sly-u.5   101255322   phosphoribulokinase, chloroplastic 
 osa-u.5   4330413   phosphoribulokinase, chloroplastic 
 zma-u.5   100282845   Phosphoribulokinase 
 zma-u.5   100281866   Phosphoribulokinase 
 zma-u.5   100279820   uncharacterized LOC100279820 

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Top 50 coexpressed genes to 7465461 (ppo-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 7465461 (ppo-u.5 coexpression data)

CoexMap"7465461"


ppoLOC7465461 | Entrez gene ID : 7465461    
Species ppo gma mtr ath vvi sly osa zma cre ghi cit hvu bdi sot bra sbi tae nta bna
Paralog 4 2 1 1 1 1 1 3 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG pop00710 [list] [network] Carbon fixation by Calvin cycle (101 genes)
pop01200 [list] [network] Carbon metabolism (347 genes)
GO BP
GO:0005975 [list] [network] carbohydrate metabolic process  (863 genes)  IEA  
GO CC
GO:0009507 [list] [network] chloroplast  (718 genes)  IEA  
GO:0005737 [list] [network] cytoplasm  (6111 genes)  IEA  
GO MF
GO:0008974 [list] [network] phosphoribulokinase activity  (2 genes)  IEA  
GO:0005524 [list] [network] ATP binding  (2559 genes)  IEA  
Protein XP_002303455.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 9,  chlo_mito 5  (predict for XP_002303455.1)
Subcellular
localization
TargetP
chlo 7  (predict for XP_002303455.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ppo-u.5
for
7465461

.
ppo-r.4
for
7465461

.
ppo-m.4
for
7465461

.
ppo-u.5
for
18094096

.
gma-u.5
for
100777515

.
gma-u.5
for
100807126

.
mtr-u.5
for
11412336

.
ath-u.5
for
PRK

.
vvi-u.5
for
100244092

.
sly-u.5
for
101255322

.
osa-u.5
for
4330413

.
zma-u.5
for
100282845

.
zma-u.5
for
100281866

.
zma-u.5
for
100279820

.


Ortholog ID: 4470
Species ath gma gma sly osa zma zma bra bra vvi ppo ppo mtr tae tae hvu ghi ghi bna bna cre sbi sbi sot cit bdi nta nta
Symbol PRK LOC100777515 LOC100807126 LOC101255322 LOC4330413 LOC100281866 LOC100279820 LOC103833678 LOC103840194 LOC100244092 LOC18094096 LOC7465461 LOC11412336 LOC123128079 LOC543283 LOC123404301 LOC107941387 LOC107938584 LOC106451740 LOC106451744 CHLRE_12g554800v5 LOC110434320 LOC8071104 LOC102591470 LOC102612734 LOC100837995 LOC107773234 LOC107831114
Function* phosphoribulokinase phosphoribulokinase, chloroplastic phosphoribulokinase, chloroplastic phosphoribulokinase, chloroplastic phosphoribulokinase, chloroplastic Phosphoribulokinase uncharacterized LOC100279820 phosphoribulokinase, chloroplastic phosphoribulokinase, chloroplastic phosphoribulokinase, chloroplastic phosphoribulokinase, chloroplastic phosphoribulokinase, chloroplastic phosphoribulokinase, chloroplastic phosphoribulokinase, chloroplastic-like phosphoribulokinase, chloroplastic-like phosphoribulokinase, chloroplastic phosphoribulokinase, chloroplastic phosphoribulokinase, chloroplastic phosphoribulokinase, chloroplastic phosphoribulokinase, chloroplastic uncharacterized protein phosphoribulokinase, chloroplastic phosphoribulokinase, chloroplastic phosphoribulokinase, chloroplastic phosphoribulokinase, chloroplastic phosphoribulokinase, chloroplastic phosphoribulokinase, chloroplastic phosphoribulokinase, chloroplastic
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath01200 Carbon metabolism 16
ath00710 Carbon fixation by Calvin cycle 11
ath00630 Glyoxylate and dicarboxylate metabolism 8
ath00260 Glycine, serine and threonine metabolism 3
ath01230 Biosynthesis of amino acids 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00710 Carbon fixation by Calvin cycle 9
gma01200 Carbon metabolism 9
gma00195 Photosynthesis 3
gma00010 Glycolysis / Gluconeogenesis 2
gma00030 Pentose phosphate pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00710 Carbon fixation by Calvin cycle 11
gma01200 Carbon metabolism 11
gma00010 Glycolysis / Gluconeogenesis 5
gma00030 Pentose phosphate pathway 5
gma00051 Fructose and mannose metabolism 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly01200 Carbon metabolism 13
sly00710 Carbon fixation by Calvin cycle 11
sly00630 Glyoxylate and dicarboxylate metabolism 4
sly00010 Glycolysis / Gluconeogenesis 3
sly00030 Pentose phosphate pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa01200 Carbon metabolism 9
osa00710 Carbon fixation by Calvin cycle 7
osa00630 Glyoxylate and dicarboxylate metabolism 4
osa00195 Photosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00710 Carbon fixation by Calvin cycle 2
zma01200 Carbon metabolism 2
zma00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00195 Photosynthesis 9
zma00710 Carbon fixation by Calvin cycle 6
zma01200 Carbon metabolism 6
zma00010 Glycolysis / Gluconeogenesis 2
zma00030 Pentose phosphate pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra01200 Carbon metabolism 7
bra00710 Carbon fixation by Calvin cycle 6
bra00010 Glycolysis / Gluconeogenesis 2
bra00030 Pentose phosphate pathway 2
bra00051 Fructose and mannose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00195 Photosynthesis 9
bra00710 Carbon fixation by Calvin cycle 5
bra01200 Carbon metabolism 5
bra00190 Oxidative phosphorylation 2
bra00196 Photosynthesis - antenna proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi01200 Carbon metabolism 10
vvi00710 Carbon fixation by Calvin cycle 8
vvi00010 Glycolysis / Gluconeogenesis 3
vvi00030 Pentose phosphate pathway 3
vvi00051 Fructose and mannose metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00710 Carbon fixation by Calvin cycle 7
ppo01200 Carbon metabolism 7
ppo01230 Biosynthesis of amino acids 3
ppo00195 Photosynthesis 3
ppo00196 Photosynthesis - antenna proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00195 Photosynthesis 4
ppo01200 Carbon metabolism 3
ppo00710 Carbon fixation by Calvin cycle 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr01200 Carbon metabolism 6
mtr00710 Carbon fixation by Calvin cycle 4
mtr00195 Photosynthesis 3
mtr00196 Photosynthesis - antenna proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae01200 Carbon metabolism 7
tae00710 Carbon fixation by Calvin cycle 4
tae00260 Glycine, serine and threonine metabolism 3
tae00630 Glyoxylate and dicarboxylate metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae01200 Carbon metabolism 6
tae00710 Carbon fixation by Calvin cycle 4
tae00196 Photosynthesis - antenna proteins 2
tae00260 Glycine, serine and threonine metabolism 2
tae00630 Glyoxylate and dicarboxylate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu01200 Carbon metabolism 7
hvu00710 Carbon fixation by Calvin cycle 5
hvu00630 Glyoxylate and dicarboxylate metabolism 4
hvu00196 Photosynthesis - antenna proteins 4
hvu00260 Glycine, serine and threonine metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00710 Carbon fixation by Calvin cycle 4
ghi01200 Carbon metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00710 Carbon fixation by Calvin cycle 4
ghi01200 Carbon metabolism 4
ghi00910 Nitrogen metabolism 4
ghi01310 Nitrogen cycle 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00710 Carbon fixation by Calvin cycle 15
bna01200 Carbon metabolism 15
bna00010 Glycolysis / Gluconeogenesis 4
bna00030 Pentose phosphate pathway 4
bna00051 Fructose and mannose metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00710 Carbon fixation by Calvin cycle 11
bna01200 Carbon metabolism 11
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre00710 Carbon fixation by Calvin cycle 8
cre01200 Carbon metabolism 8
cre00030 Pentose phosphate pathway 5
cre00010 Glycolysis / Gluconeogenesis 4
cre01230 Biosynthesis of amino acids 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00195 Photosynthesis 8
sbi00196 Photosynthesis - antenna proteins 5
sbi00710 Carbon fixation by Calvin cycle 3
sbi01200 Carbon metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00195 Photosynthesis 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot01200 Carbon metabolism 6
sot00710 Carbon fixation by Calvin cycle 5
sot00195 Photosynthesis 4
sot00010 Glycolysis / Gluconeogenesis 2
sot00030 Pentose phosphate pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit01200 Carbon metabolism 10
cit00710 Carbon fixation by Calvin cycle 8
cit00010 Glycolysis / Gluconeogenesis 4
cit00620 Pyruvate metabolism 3
cit00030 Pentose phosphate pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi01200 Carbon metabolism 5
bdi00630 Glyoxylate and dicarboxylate metabolism 4
bdi00710 Carbon fixation by Calvin cycle 4
bdi00260 Glycine, serine and threonine metabolism 2
bdi01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00710 Carbon fixation by Calvin cycle 10
nta01200 Carbon metabolism 10
nta00630 Glyoxylate and dicarboxylate metabolism 6
nta00190 Oxidative phosphorylation 2
nta00195 Photosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 4
nta00860 Porphyrin metabolism 2
nta00710 Carbon fixation by Calvin cycle 2
nta01200 Carbon metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 840098 100777515 100807126 101255322 4330413 100281866 100279820 103833678 103840194 100244092 18094096 7465461 11412336 123128079 543283 123404301 107941387 107938584 106451740 106451744 5719722 110434320 8071104 102591470 102612734 100837995 107773234 107831114
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