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Orthologous genes in OrthoFinder**

Species Gene Description
 ppo-m.4   7471998   uncharacterized LOC7471998 
 ppo-u.5   7471998   uncharacterized LOC7471998 
 ppo-r.4   7471998   uncharacterized LOC7471998 
 gma-u.5   100808954   DNA-directed RNA polymerase III subunit RPC8 
 gma-u.5   100800770   DNA-directed RNA polymerase III subunit RPC8-like 
 mtr-u.5   11417037   DNA-directed RNA polymerase III subunit RPC8 
 ath-u.5   AT1G06790   RNA polymerase Rpb7 N-terminal domain-containing protein 
 bra-r.6   103836467   DNA-directed RNA polymerase III subunit RPC8 
 vvi-u.5   100263218   uncharacterized LOC100263218 
 vvi-u.5   100261445   uncharacterized LOC100261445 
 ghi-r.1   107936735   DNA-directed RNA polymerase III subunit RPC8 
 ghi-r.1   107955465   DNA-directed RNA polymerase III subunit RPC8 
 cit-r.1   102629765   uncharacterized LOC102629765 
 sly-u.5   101258274   uncharacterized LOC101258274 
 sot-r.1   102590386   DNA-directed RNA polymerase III subunit RPC8 
 nta-r.1   107809327   uncharacterized LOC107809327 
 nta-r.1   107831556   uncharacterized LOC107831556 
 osa-u.5   4343220   DNA-directed RNA polymerase III subunit RPC8 
 zma-u.5   100281221   DNA-directed RNA polymerase III subunit 22.9 kDa polypeptide 
 hvu-r.1   123452470   DNA-directed RNA polymerase III subunit RPC8 
 sbi-r.1   8077282   DNA-directed RNA polymerase III subunit rpc8 
 bdi-r.1   100846267   DNA-directed RNA polymerase III subunit RPC8 
 bdi-r.1   100831013   DNA-directed RNA polymerase III subunit RPC8 
 cre-r.1   CHLRE_12g538400v5   uncharacterized protein 

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Top 50 coexpressed genes to 7471998 (ppo-m.4 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 7471998 (ppo-m.4 coexpression data)

CoexMap"7471998"


ppoLOC7471998 | Entrez gene ID : 7471998    
Species ppo gma mtr ath bra vvi ghi cit sly sot nta osa zma hvu sbi bdi cre tae bna
Paralog 3 2 1 1 1 2 2 1 1 1 2 1 1 1 1 2 1 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG pop03020 [list] [network] RNA polymerase (53 genes)
GO BP
GO:0006384 [list] [network] transcription initiation at RNA polymerase III promoter  (7 genes)  IEA  
GO:0006351 [list] [network] DNA-templated transcription  (264 genes)  IEA  
GO CC
GO:0005666 [list] [network] RNA polymerase III complex  (22 genes)  IEA  
GO MF
Protein XP_024450275.1 [sequence] [blastp]
XP_024450276.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 4,  cyto_nucl 4,  cyto 3,  chlo 1,  mito 1,  golg 1  (predict for XP_024450275.1)
nucl 6,  cyto 2,  chlo 1,  mito 1,  golg 1,  chlo_mito 1  (predict for XP_024450276.1)
Subcellular
localization
TargetP
scret 7,  other 6  (predict for XP_024450275.1)
scret 7,  other 6  (predict for XP_024450276.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ppo-m.4
for
7471998
ppo-u.5
for
7471998
ppo-r.4
for
7471998
gma-u.5
for
100808954
gma-u.5
for
100800770
mtr-u.5
for
11417037
ath-u.5
for
AT1G06790
bra-r.6
for
103836467
vvi-u.5
for
100263218
vvi-u.5
for
100261445
ghi-r.1
for
107936735
ghi-r.1
for
107955465
cit-r.1
for
102629765
sly-u.5
for
101258274
sot-r.1
for
102590386
nta-r.1
for
107809327
nta-r.1
for
107831556
osa-u.5
for
4343220
zma-u.5
for
100281221
hvu-r.1
for
123452470
sbi-r.1
for
8077282
bdi-r.1
for
100846267
bdi-r.1
for
100831013
cre-r.1
for
CHLRE_12g538400v5


Ortholog ID: 6117
Species ppo gma gma mtr ath bra vvi vvi ghi ghi cit sly sot nta nta osa zma tae hvu sbi bdi bdi cre
Symbol LOC7471998 LOC100808954 LOC100800770 LOC11417037 AT1G06790 LOC103836467 LOC100263218 LOC100263195 LOC107936735 LOC107955465 LOC102629765 LOC101258274 LOC102590386 LOC107809327 LOC107831556 LOC4343220 LOC100281221 LOC123161122 LOC123452470 LOC8077282 LOC100846267 LOC100831013 CHLRE_12g538400v5
Function* uncharacterized LOC7471998 DNA-directed RNA polymerase III subunit RPC8 DNA-directed RNA polymerase III subunit RPC8-like DNA-directed RNA polymerase III subunit RPC8 RNA polymerase Rpb7 N-terminal domain-containing protein DNA-directed RNA polymerase III subunit RPC8 uncharacterized LOC100263218 uncharacterized LOC100263195 DNA-directed RNA polymerase III subunit RPC8 DNA-directed RNA polymerase III subunit RPC8 uncharacterized LOC102629765 uncharacterized LOC101258274 DNA-directed RNA polymerase III subunit RPC8 uncharacterized LOC107809327 uncharacterized LOC107831556 DNA-directed RNA polymerase III subunit RPC8 DNA-directed RNA polymerase III subunit 22.9 kDa polypeptide DNA-directed RNA polymerase III subunit RPC8 DNA-directed RNA polymerase III subunit RPC8 DNA-directed RNA polymerase III subunit rpc8 DNA-directed RNA polymerase III subunit RPC8 DNA-directed RNA polymerase III subunit RPC8 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 3
gma03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03020 RNA polymerase 2
gma03008 Ribosome biogenesis in eukaryotes 2
gma04712 Circadian rhythm - plant 2
gma00071 Fatty acid degradation 2
gma00280 Valine, leucine and isoleucine degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03022 Basal transcription factors 2
mtr03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03018 RNA degradation 3
ath03020 RNA polymerase 2
ath03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03020 RNA polymerase 4
bra03420 Nucleotide excision repair 2
bra03008 Ribosome biogenesis in eukaryotes 2
bra03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 6
sly03020 RNA polymerase 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03020 RNA polymerase 2
sot00650 Butanoate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03020 RNA polymerase 2
nta00230 Purine metabolism 2
nta01232 Nucleotide metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03020 RNA polymerase 2
nta04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03018 RNA degradation 3
zma03020 RNA polymerase 2
zma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03430 Mismatch repair 6
tae03030 DNA replication 4
tae00230 Purine metabolism 3
tae03410 Base excision repair 3
tae03420 Nucleotide excision repair 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03008 Ribosome biogenesis in eukaryotes 4
sbi03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03008 Ribosome biogenesis in eukaryotes 10
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03020 RNA polymerase 5
cre03420 Nucleotide excision repair 4
cre01240 Biosynthesis of cofactors 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 7471998 100808954 100800770 11417037 837190 103836467 100263218 100263195 107936735 107955465 102629765 101258274 102590386 107809327 107831556 4343220 100281221 123161122 123452470 8077282 100846267 100831013 5718447
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