Select Species**


OK


Orthologous genes in OrthoFinder**

Species Gene Description
 sbi-r.1   8077282   DNA-directed RNA polymerase III subunit rpc8 
 zma-u.5   100281221   DNA-directed RNA polymerase III subunit 22.9 kDa polypeptide 
 osa-u.5   4343220   DNA-directed RNA polymerase III subunit RPC8 
 ath-u.5   AT1G06790   RNA polymerase Rpb7 N-terminal domain-containing protein 
 gma-u.5   100808954   DNA-directed RNA polymerase III subunit RPC8 
 gma-u.5   100800770   DNA-directed RNA polymerase III subunit RPC8-like 
 sly-u.5   101258274   uncharacterized LOC101258274 
 vvi-u.5   100263218   uncharacterized LOC100263218 
 vvi-u.5   100261445   uncharacterized LOC100261445 
 ppo-u.5   7471998   uncharacterized LOC7471998 
 mtr-u.5   11417037   DNA-directed RNA polymerase III subunit RPC8 

close


Top 50 coexpressed genes to 8077282 (sbi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

close

close

Top 50 enrichment test to 8077282 (sbi-r.1 coexpression data)

CoexMap"8077282"


sbiLOC8077282 | Entrez gene ID : 8077282      
Species sbi zma osa ath gma sly vvi ppo mtr bra nta cre hvu cit bdi sot tae bna ghi
Paralog 1 1 1 1 2 1 2 1 1 0 0 0 0 0 0 0 0 0 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG sbi03020 [list] [network] RNA polymerase (56 genes)
GO BP
GO:0006384 [list] [network] transcription initiation at RNA polymerase III promoter  (10 genes)  IEA  
GO:0006351 [list] [network] DNA-templated transcription  (215 genes)  IEA  
GO CC
GO:0005666 [list] [network] RNA polymerase III complex  (24 genes)  IEA  
GO MF
Protein XP_002460684.1 [sequence] [blastp]
XP_021308199.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 8,  nucl 1  (predict for XP_002460684.1)
cyto 6,  cyto_nucl 5,  cyto_E.R. 4,  nucl 1  (predict for XP_021308199.1)
Subcellular
localization
TargetP
other 8  (predict for XP_002460684.1)
other 7  (predict for XP_021308199.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

sbi-r.1
for
8077282

.
zma-u.5
for
100281221

.
osa-u.5
for
4343220

.
ath-u.5
for
AT1G06790

.
gma-u.5
for
100808954

.
gma-u.5
for
100800770

.
sly-u.5
for
101258274

.
vvi-u.5
for
100263218

.
vvi-u.5
for
100261445

.
ppo-u.5
for
7471998

.
mtr-u.5
for
11417037

.


Ortholog ID: 6117
Species ath gma gma sly osa zma bra vvi ppo mtr tae hvu ghi ghi cre sbi sot cit bdi bdi nta nta
Symbol AT1G06790 LOC100800770 LOC100808954 LOC101258274 LOC4343220 LOC100281221 LOC103836467 LOC100263195 LOC7471998 LOC11417037 LOC123161122 LOC123452470 LOC107955465 LOC107936735 CHLRE_12g538400v5 LOC8077282 LOC102590386 LOC102629765 LOC100831013 LOC100846267 LOC107831556 LOC107809327
Function* RNA polymerase Rpb7 N-terminal domain-containing protein DNA-directed RNA polymerase III subunit RPC8-like DNA-directed RNA polymerase III subunit RPC8 uncharacterized LOC101258274 DNA-directed RNA polymerase III subunit RPC8 DNA-directed RNA polymerase III subunit 22.9 kDa polypeptide DNA-directed RNA polymerase III subunit RPC8 uncharacterized LOC100263195 uncharacterized LOC7471998 DNA-directed RNA polymerase III subunit RPC8 DNA-directed RNA polymerase III subunit RPC8 DNA-directed RNA polymerase III subunit RPC8 DNA-directed RNA polymerase III subunit RPC8 DNA-directed RNA polymerase III subunit RPC8 uncharacterized protein DNA-directed RNA polymerase III subunit rpc8 DNA-directed RNA polymerase III subunit RPC8 uncharacterized LOC102629765 DNA-directed RNA polymerase III subunit RPC8 DNA-directed RNA polymerase III subunit RPC8 uncharacterized LOC107831556 uncharacterized LOC107809327
Coexmap

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.
Coexpression

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.
KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03018 RNA degradation 3
ath03020 RNA polymerase 2
ath03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03020 RNA polymerase 2
gma03008 Ribosome biogenesis in eukaryotes 2
gma04712 Circadian rhythm - plant 2
gma00071 Fatty acid degradation 2
gma00280 Valine, leucine and isoleucine degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 3
gma03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 6
sly03020 RNA polymerase 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03018 RNA degradation 3
zma03020 RNA polymerase 2
zma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03020 RNA polymerase 4
bra03420 Nucleotide excision repair 2
bra03008 Ribosome biogenesis in eukaryotes 2
bra03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03022 Basal transcription factors 2
mtr03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03430 Mismatch repair 6
tae03030 DNA replication 4
tae00230 Purine metabolism 3
tae03410 Base excision repair 3
tae03420 Nucleotide excision repair 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03020 RNA polymerase 5
cre03420 Nucleotide excision repair 4
cre01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03008 Ribosome biogenesis in eukaryotes 4
sbi03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03020 RNA polymerase 2
sot00650 Butanoate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03008 Ribosome biogenesis in eukaryotes 10
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03020 RNA polymerase 2
nta04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03020 RNA polymerase 2
nta00230 Purine metabolism 2
nta01232 Nucleotide metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 837190 100800770 100808954 101258274 4343220 100281221 103836467 100263195 7471998 11417037 123161122 123452470 107955465 107936735 5718447 8077282 102590386 102629765 100831013 100846267 107831556 107809327
The preparation time of this page was 0.3 [sec].