ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
ppo-m.4	7484372	SKP1-like protein 21
ppo-u.5	7484372	SKP1-like protein 21
ppo-r.4	7484372	SKP1-like protein 21
ppo-u.5	7496974	SKP1-like protein 21
ppo-u.5	7457345	SKP1-like protein 21
ppo-u.5	7454522	SKP1-like protein 21
gma-u.5	100809439	SKP1-like protein 21
gma-u.5	100808004	SKP1-like protein 21
gma-u.5	100794666	SKP1-like protein 21
mtr-u.5	11445956	SKP1-like protein 21
mtr-u.5	25496528	SKP1-like protein 21
mtr-u.5	11437860	SKP1-like protein 21
ath-u.5	SK20	SKP1-like 20
ath-u.5	SK21	SKP1-like 21
bra-r.6	103830295	SKP1-like protein 21
bra-r.6	103866935	SKP1-like protein 20
bra-r.6	103841963	SKP1-like protein 21
vvi-u.5	100265362	SKP1-like protein 21
vvi-u.5	100247347	SKP1-like protein 21
ghi-r.1	107900882	SKP1-like protein 21
ghi-r.1	107911525	SKP1-like protein 21
ghi-r.1	121202916	SKP1-like protein 21
bna-r.1	106450935	SKP1-like protein 20
bna-r.1	106450869	SKP1-like protein 20
bna-r.1	106432731	SKP1-like protein 21
cit-r.1	127898613	SKP1-like protein 21
cit-r.1	102627808	SKP1-like protein 21
cit-r.1	102620512	SKP1-like protein 21
sly-u.5	101257146	SKP1-like protein 21
sly-u.5	101263913	SKP1-like protein 21
sot-r.1	102578338	SKP1-like protein 21
sot-r.1	102598921	SKP1-like protein 21
nta-r.1	107832085	SKP1-like protein 21
nta-r.1	107823667	SKP1-like protein 21
nta-r.1	107799527	SKP1-like protein 21
osa-u.5	4331327	SKP1-like protein 21
zma-u.5	100273625	uncharacterized LOC100273625
zma-u.5	103639617	SKP1-like protein 21
zma-u.5	100281615	uncharacterized LOC100281615
tae-r.2	123099088	SKP1-like protein 21
tae-r.2	123106045	SKP1-like protein 21
tae-r.2	123093864	SKP1-like protein 21
hvu-r.1	123449944	SKP1-like protein 21
sbi-r.1	8081481	SKP1-like protein 21
sbi-r.1	110437409	SKP1-like protein 21
bdi-r.1	100837314	SKP1-like protein 21

Top 50 coexpressed genes to 7484372 (ppo-m.4 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 7484372 (ppo-m.4 coexpression data)

CoexMap"7484372"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO:0031146 [list] [network] SCF-dependent proteasomal ubiquitin-dependent protein catabolic process

(68 genes)

IEA

GO CC

GO:0005634 [list] [network] nucleus	(3662 genes)	IEA
GO:0005737 [list] [network] cytoplasm	(6111 genes)	IEA

GO MF

GO:0097602 [list] [network] cullin family protein binding

(25 genes)

IEA

Protein

XP_024438044.2 [sequence] [blastp]
XP_024438046.2 [sequence] [blastp]
XP_024438047.1 [sequence] [blastp]
XP_024438048.1 [sequence] [blastp]
XP_024438049.2 [sequence] [blastp]
XP_052301988.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 5, cyto 2, chlo 1, cysk 1	(predict for XP_024438044.2)
nucl 5, cyto 2, chlo 1, cysk 1	(predict for XP_024438046.2)
nucl 6, cyto 1, cysk 1	(predict for XP_024438047.1)
nucl 7, cyto 1, cysk 1	(predict for XP_024438048.1)
chlo 7, nucl 2	(predict for XP_024438049.2)
nucl 5, cyto 2, chlo 1, cysk 1	(predict for XP_052301988.1)

Subcellular
localization
TargetP

other 7	(predict for XP_024438044.2)
other 7	(predict for XP_024438046.2)
other 7	(predict for XP_024438047.1)
other 7	(predict for XP_024438048.1)
other 3	(predict for XP_024438049.2)
other 7	(predict for XP_052301988.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target			Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ppo-m.4 for 7484372	ppo-u.5 for 7484372	ppo-r.4 for 7484372	ppo-u.5 for 7496974	ppo-u.5 for 7457345	ppo-u.5 for 7454522	gma-u.5 for 100809439	gma-u.5 for 100808004	gma-u.5 for 100794666	mtr-u.5 for 11445956	mtr-u.5 for 25496528	mtr-u.5 for 11437860	ath-u.5 for SK20	ath-u.5 for SK21	bra-r.6 for 103830295	bra-r.6 for 103866935	bra-r.6 for 103841963	vvi-u.5 for 100265362	vvi-u.5 for 100247347	ghi-r.1 for 107900882	ghi-r.1 for 107911525	ghi-r.1 for 121202916	bna-r.1 for 106450935	bna-r.1 for 106450869	bna-r.1 for 106432731	cit-r.1 for 127898613	cit-r.1 for 102627808	cit-r.1 for 102620512	sly-u.5 for 101257146	sly-u.5 for 101263913	sot-r.1 for 102578338	sot-r.1 for 102598921	nta-r.1 for 107832085	nta-r.1 for 107823667	nta-r.1 for 107799527	osa-u.5 for 4331327	zma-u.5 for 100273625	zma-u.5 for 103639617	zma-u.5 for 100281615	tae-r.2 for 123099088	tae-r.2 for 123106045	tae-r.2 for 123093864	hvu-r.1 for 123449944	sbi-r.1 for 8081481	sbi-r.1 for 110437409	bdi-r.1 for 100837314

Ortholog

Ortholog ID: 3095

Species

ppo

gma

mtr

ath

bra

vvi

ghi

bna

cit

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

Symbol

SK20

SK21

Function^*

SKP1-like protein 21

SKP1-like 20

SKP1-like 21

SKP1-like protein 21

SKP1-like protein 20

SKP1-like protein 21

uncharacterized LOC100281615

SKP1-like protein 21

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00564	Glycerophospholipid metabolism	3
gma00592	alpha-Linolenic acid metabolism	3
gma04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04148	Efferocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03008	Ribosome biogenesis in eukaryotes	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00970	Aminoacyl-tRNA biosynthesis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi00970	Aminoacyl-tRNA biosynthesis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03040	Spliceosome	3
sly04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03060	Protein export	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03460	Fanconi anemia pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03410	Base excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma00230	Purine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03013	Nucleocytoplasmic transport	2
zma03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03040	Spliceosome	5
tae00970	Aminoacyl-tRNA biosynthesis	4
tae04120	Ubiquitin mediated proteolysis	3
tae03008	Ribosome biogenesis in eukaryotes	2
tae04712	Circadian rhythm - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00970	Aminoacyl-tRNA biosynthesis	7
tae03040	Spliceosome	2
tae03008	Ribosome biogenesis in eukaryotes	2
tae04712	Circadian rhythm - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03040	Spliceosome	3
tae03008	Ribosome biogenesis in eukaryotes	3
tae04712	Circadian rhythm - plant	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi00740	Riboflavin metabolism	2
sbi01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03040	Spliceosome	4

Expression

Expression pattern

Entrez Gene ID^*

7496974

7457345

7454522

100808004

100794666

100785953

11445956

25496528

11437860

819203

825314

103830295

103866935

103841963

100265362

100247347

107900882

107911525

107924835

106412032

106411796

106353267

127898613

102627808

102620512

101257146

101263913

102578338

102598921

107832085

107823667

107820068

4331327

103639617

100281615

100304273

123099088

123106045

123093864

123449944

8081481

110437409

100837314

The preparation time of this page was 0.2 [sec].


Species	ppo	gma	mtr	ath	bra	vvi	ghi	bna	cit	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	6	3	3	2	3	2	3	3	3	2	2	3	1	3	3	1	2	1	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 7484372 (ppo-m.4 coexpression data)

Top 50 enrichment test to 7484372 (ppo-m.4 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**