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Orthologous genes in OrthoFinder**

Species Gene Description
 ppo-m.4   7488352   ubiquitin receptor RAD23d 
 ppo-u.5   7488352   ubiquitin receptor RAD23d 
 ppo-r.4   7488352   ubiquitin receptor RAD23d 
 ppo-u.5   18099502   ubiquitin receptor RAD23c 
 ppo-u.5   7476798   ubiquitin receptor RAD23b 
 ppo-u.5   7489348   ubiquitin receptor RAD23d 
 gma-u.5   100814162   ubiquitin receptor RAD23c 
 gma-u.5   100819019   putative DNA repair protein RAD23-1-like 
 gma-u.5   100818012   ubiquitin receptor RAD23c 
 mtr-u.5   25488002   ubiquitin receptor RAD23b 
 mtr-u.5   25499820   ubiquitin receptor RAD23d 
 mtr-u.5   112418701   ubiquitin receptor RAD23b 
 ath-u.5   RAD23C   Rad23 UV excision repair protein family 
 ath-u.5   RAD23D   Rad23 UV excision repair protein family 
 ath-u.5   RAD23A   Rad23 UV excision repair protein family 
 bra-r.6   103863786   ubiquitin receptor RAD23d 
 bra-r.6   103858967   ubiquitin receptor RAD23c 
 vvi-u.5   100267246   ubiquitin receptor RAD23b 
 vvi-u.5   100245820   ubiquitin receptor RAD23c 
 vvi-u.5   100244610   ubiquitin receptor RAD23c 
 ghi-r.1   107891755   ubiquitin receptor RAD23b 
 ghi-r.1   107895745   ubiquitin receptor RAD23b 
 ghi-r.1   107901916   ubiquitin receptor RAD23b 
 bna-r.1   125607895   ubiquitin receptor RAD23d-like 
 bna-r.1   111203375   ubiquitin receptor RAD23d 
 bna-r.1   125606963   ubiquitin receptor RAD23c-like 
 cit-r.1   102614644   ubiquitin receptor RAD23c-like 
 cit-r.1   102620700   ubiquitin receptor RAD23b 
 cit-r.1   102610300   ubiquitin receptor RAD23d-like 
 sly-u.5   101251966   ubiquitin receptor RAD23b 
 sly-u.5   101258124   ubiquitin receptor RAD23c 
 sly-u.5   RAD23d   ubiquitin receptor RAD23d 
 sot-r.1   102593740   ubiquitin receptor RAD23b 
 sot-r.1   102604588   ubiquitin receptor RAD23d 
 sot-r.1   102577665   uncharacterized LOC102577665 
 nta-r.1   107805338   ubiquitin receptor RAD23d-like 
 nta-r.1   107796487   ubiquitin receptor RAD23d 
 nta-r.1   107785012   ubiquitin receptor RAD23d 
 osa-u.5   4347014   probable ubiquitin receptor RAD23 
 osa-u.5   4345632   probable ubiquitin receptor RAD23 
 osa-u.5   4340699   ubiquitin receptor RAD23d 
 zma-u.5   100283179   uncharacterized LOC100283179 
 zma-u.5   100282762   uncharacterized LOC100282762 
 zma-u.5   100282427   uncharacterized LOC100282427 
 tae-r.2   123111926   probable ubiquitin receptor RAD23 
 tae-r.2   123132493   ubiquitin receptor RAD23b 
 tae-r.2   123103689   probable ubiquitin receptor RAD23 
 hvu-r.1   123407404   ubiquitin receptor RAD23d-like 
 sbi-r.1   8079399   ubiquitin receptor RAD23b 
 sbi-r.1   110432948   probable ubiquitin receptor RAD23 
 sbi-r.1   110430980   ubiquitin receptor RAD23d-like 
 bdi-r.1   100830156   probable ubiquitin receptor RAD23 
 bdi-r.1   100823797   probable ubiquitin receptor RAD23 
 bdi-r.1   100838271   ubiquitin receptor RAD23d 
 cre-r.1   CHLRE_08g366400v5   uncharacterized protein 

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Top 50 coexpressed genes to 7488352 (ppo-m.4 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 7488352 (ppo-m.4 coexpression data)

CoexMap"7488352"


ppoLOC7488352 | Entrez gene ID : 7488352    
Species ppo gma mtr ath bra vvi ghi bna cit sly sot nta osa zma tae hvu sbi bdi cre
Paralog 6 3 3 3 2 3 3 3 3 3 3 3 3 3 3 1 3 3 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG pop03420 [list] [network] Nucleotide excision repair (89 genes)
pop04141 [list] [network] Protein processing in endoplasmic reticulum (286 genes)
GO BP
GO:0006289 [list] [network] nucleotide-excision repair  (41 genes)  IEA  
GO:0043161 [list] [network] proteasome-mediated ubiquitin-dependent protein catabolic process  (182 genes)  IEA  
GO CC
GO:0005654 [list] [network] nucleoplasm  (247 genes)  IEA  
GO:0005829 [list] [network] cytosol  (1141 genes)  IEA  
GO MF
GO:0070628 [list] [network] proteasome binding  (17 genes)  IEA  
GO:0031593 [list] [network] polyubiquitin modification-dependent protein binding  (30 genes)  IEA  
GO:0003684 [list] [network] damaged DNA binding  (35 genes)  IEA  
GO:0043130 [list] [network] ubiquitin binding  (80 genes)  IEA  
Protein XP_024463542.2 [sequence] [blastp]
Subcellular
localization
wolf
cyto 4,  chlo 3,  mito 2,  nucl 1,  cyto_mito 1,  nucl_plas 1  (predict for XP_024463542.2)
Subcellular
localization
TargetP
other 9  (predict for XP_024463542.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ppo-m.4
for
7488352
ppo-u.5
for
7488352
ppo-r.4
for
7488352
ppo-u.5
for
18099502
ppo-u.5
for
7476798
ppo-u.5
for
7489348
gma-u.5
for
100814162
gma-u.5
for
100819019
gma-u.5
for
100818012
mtr-u.5
for
25488002
mtr-u.5
for
25499820
mtr-u.5
for
112418701
ath-u.5
for
RAD23C
ath-u.5
for
RAD23D
ath-u.5
for
RAD23A
bra-r.6
for
103863786
bra-r.6
for
103858967
vvi-u.5
for
100267246
vvi-u.5
for
100245820
vvi-u.5
for
100244610
ghi-r.1
for
107891755
ghi-r.1
for
107895745
ghi-r.1
for
107901916
bna-r.1
for
125607895
bna-r.1
for
111203375
bna-r.1
for
125606963
cit-r.1
for
102614644
cit-r.1
for
102620700
cit-r.1
for
102610300
sly-u.5
for
101251966
sly-u.5
for
101258124
sly-u.5
for
RAD23d
sot-r.1
for
102593740
sot-r.1
for
102604588
sot-r.1
for
102577665
nta-r.1
for
107805338
nta-r.1
for
107796487
nta-r.1
for
107785012
osa-u.5
for
4347014
osa-u.5
for
4345632
osa-u.5
for
4340699
zma-u.5
for
100283179
zma-u.5
for
100282762
zma-u.5
for
100282427
tae-r.2
for
123111926
tae-r.2
for
123132493
tae-r.2
for
123103689
hvu-r.1
for
123407404
sbi-r.1
for
8079399
sbi-r.1
for
110432948
sbi-r.1
for
110430980
bdi-r.1
for
100830156
bdi-r.1
for
100823797
bdi-r.1
for
100838271
cre-r.1
for
CHLRE_08g366400v5


Ortholog ID: 748
Species ppo ppo ppo gma gma gma mtr mtr mtr ath ath ath bra bra bra vvi vvi vvi ghi ghi ghi bna bna bna cit cit cit sly sly sly sot sot sot nta nta nta osa osa osa zma zma zma tae tae tae hvu hvu sbi sbi sbi bdi bdi bdi cre
Symbol LOC18099502 LOC7476798 LOC7489348 LOC100814162 LOC100819019 LOC100813881 LOC25488002 LOC25499820 LOC112418701 RAD23D RAD23A RAD23B LOC103858967 LOC103850114 LOC103842858 LOC100267246 LOC100245820 LOC100244610 LOC107891755 LOC107919971 LOC107913821 LOC106352651 LOC106429448 LOC106438939 LOC102614644 LOC102620700 LOC102610300 LOC101251966 LOC101258124 RAD23d LOC102604588 LOC102577665 LOC102599587 LOC107796487 LOC107783697 LOC107764526 LOC4347014 LOC4345632 LOC4328500 LOC100283179 LOC100282427 LOC100274222 LOC123132493 LOC123121483 LOC123136563 LOC123407404 LOC123396360 LOC8079399 LOC110432948 LOC110430980 LOC100830156 LOC100838271 LOC100823267 CHLRE_08g366400v5
Function* ubiquitin receptor RAD23c ubiquitin receptor RAD23b ubiquitin receptor RAD23d ubiquitin receptor RAD23c putative DNA repair protein RAD23-1-like ubiquitin receptor RAD23c-like ubiquitin receptor RAD23b ubiquitin receptor RAD23d ubiquitin receptor RAD23b Rad23 UV excision repair protein family Rad23 UV excision repair protein family Rad23 UV excision repair protein family ubiquitin receptor RAD23c ubiquitin receptor RAD23d probable ubiquitin receptor RAD23a ubiquitin receptor RAD23b ubiquitin receptor RAD23c ubiquitin receptor RAD23c ubiquitin receptor RAD23b ubiquitin receptor RAD23c ubiquitin receptor RAD23b ubiquitin receptor RAD23d ubiquitin receptor RAD23d ubiquitin receptor RAD23c ubiquitin receptor RAD23c-like ubiquitin receptor RAD23b ubiquitin receptor RAD23d-like ubiquitin receptor RAD23b ubiquitin receptor RAD23c ubiquitin receptor RAD23d ubiquitin receptor RAD23d uncharacterized LOC102577665 ubiquitin receptor RAD23d-like ubiquitin receptor RAD23d ubiquitin receptor RAD23d ubiquitin receptor RAD23b probable ubiquitin receptor RAD23 probable ubiquitin receptor RAD23 ubiquitin receptor RAD23b uncharacterized LOC100283179 uncharacterized LOC100282427 DNA repair protein RAD23 ubiquitin receptor RAD23b probable ubiquitin receptor RAD23 ubiquitin receptor RAD23b ubiquitin receptor RAD23d-like probable ubiquitin receptor RAD23 ubiquitin receptor RAD23b probable ubiquitin receptor RAD23 ubiquitin receptor RAD23d-like probable ubiquitin receptor RAD23 ubiquitin receptor RAD23d ubiquitin receptor RAD23b uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04141 Protein processing in endoplasmic reticulum 5
ppo04144 Endocytosis 3
ppo03083 Polycomb repressive complex 3
ppo04120 Ubiquitin mediated proteolysis 3
ppo03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 2
ppo03420 Nucleotide excision repair 2
ppo04141 Protein processing in endoplasmic reticulum 2
ppo03008 Ribosome biogenesis in eukaryotes 2
ppo00220 Arginine biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04141 Protein processing in endoplasmic reticulum 3
ppo00190 Oxidative phosphorylation 2
ppo04142 Lysosome 2
ppo04145 Phagosome 2
ppo04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03420 Nucleotide excision repair 4
gma04141 Protein processing in endoplasmic reticulum 4
gma03013 Nucleocytoplasmic transport 2
gma04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 2
gma03420 Nucleotide excision repair 2
gma04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03050 Proteasome 5
gma04141 Protein processing in endoplasmic reticulum 5
gma03420 Nucleotide excision repair 4
gma00030 Pentose phosphate pathway 2
gma00230 Purine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03050 Proteasome 7
mtr03010 Ribosome 3
mtr03420 Nucleotide excision repair 2
mtr04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03050 Proteasome 6
mtr04144 Endocytosis 3
mtr03420 Nucleotide excision repair 2
mtr04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03050 Proteasome 11
ath04141 Protein processing in endoplasmic reticulum 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03015 mRNA surveillance pathway 3
ath03013 Nucleocytoplasmic transport 3
ath03420 Nucleotide excision repair 2
ath04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03015 mRNA surveillance pathway 3
ath04141 Protein processing in endoplasmic reticulum 3
ath04382 Cornified envelope formation 2
ath03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00190 Oxidative phosphorylation 11
bra04145 Phagosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03050 Proteasome 7
vvi03013 Nucleocytoplasmic transport 2
vvi03082 ATP-dependent chromatin remodeling 2
vvi03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi01200 Carbon metabolism 3
vvi00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00190 Oxidative phosphorylation 3
vvi04145 Phagosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03420 Nucleotide excision repair 6
ghi04141 Protein processing in endoplasmic reticulum 6
ghi00030 Pentose phosphate pathway 2
ghi00230 Purine metabolism 2
ghi01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03420 Nucleotide excision repair 8
ghi04141 Protein processing in endoplasmic reticulum 8
ghi03018 RNA degradation 2
ghi00240 Pyrimidine metabolism 2
ghi00760 Nicotinate and nicotinamide metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03420 Nucleotide excision repair 6
ghi04141 Protein processing in endoplasmic reticulum 6
ghi00030 Pentose phosphate pathway 2
ghi00230 Purine metabolism 2
ghi01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03420 Nucleotide excision repair 4
bna04141 Protein processing in endoplasmic reticulum 4
bna04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03420 Nucleotide excision repair 4
bna04141 Protein processing in endoplasmic reticulum 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03420 Nucleotide excision repair 2
bna04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03040 Spliceosome 2
cit03008 Ribosome biogenesis in eukaryotes 2
cit04712 Circadian rhythm - plant 2
cit03015 mRNA surveillance pathway 2
cit04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04141 Protein processing in endoplasmic reticulum 2
cit00970 Aminoacyl-tRNA biosynthesis 2
cit03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00071 Fatty acid degradation 4
cit01240 Biosynthesis of cofactors 3
cit01212 Fatty acid metabolism 3
cit04146 Peroxisome 3
cit00053 Ascorbate and aldarate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03050 Proteasome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03050 Proteasome 10
sly04141 Protein processing in endoplasmic reticulum 3
sly03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03420 Nucleotide excision repair 2
sly04141 Protein processing in endoplasmic reticulum 2
sly03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 4
sot03420 Nucleotide excision repair 2
sot04141 Protein processing in endoplasmic reticulum 2
sot03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03420 Nucleotide excision repair 2
sot04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04120 Ubiquitin mediated proteolysis 5
nta03420 Nucleotide excision repair 2
nta04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04016 MAPK signaling pathway - plant 4
nta04070 Phosphatidylinositol signaling system 4
nta04075 Plant hormone signal transduction 4
nta04626 Plant-pathogen interaction 4
nta03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03018 RNA degradation 2
nta03040 Spliceosome 2
nta03420 Nucleotide excision repair 2
nta04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04141 Protein processing in endoplasmic reticulum 2
osa03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03050 Proteasome 12
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03030 DNA replication 3
osa03420 Nucleotide excision repair 3
osa03410 Base excision repair 2
osa03082 ATP-dependent chromatin remodeling 2
osa03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03050 Proteasome 2
zma04141 Protein processing in endoplasmic reticulum 2
zma03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03082 ATP-dependent chromatin remodeling 3
zma03083 Polycomb repressive complex 2
zma03410 Base excision repair 2
zma03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03050 Proteasome 11
zma03420 Nucleotide excision repair 2
zma04141 Protein processing in endoplasmic reticulum 2
zma03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03420 Nucleotide excision repair 3
tae04141 Protein processing in endoplasmic reticulum 3
tae03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03050 Proteasome 11
tae03420 Nucleotide excision repair 3
tae04141 Protein processing in endoplasmic reticulum 3
tae03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04141 Protein processing in endoplasmic reticulum 4
tae03420 Nucleotide excision repair 3
tae03050 Proteasome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04712 Circadian rhythm - plant 2
hvu03013 Nucleocytoplasmic transport 2
hvu03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03050 Proteasome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04141 Protein processing in endoplasmic reticulum 3
sbi03050 Proteasome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03050 Proteasome 7
sbi04141 Protein processing in endoplasmic reticulum 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03040 Spliceosome 3
bdi04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03050 Proteasome 4
bdi04141 Protein processing in endoplasmic reticulum 3
bdi03008 Ribosome biogenesis in eukaryotes 2
bdi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00600 Sphingolipid metabolism 3
bdi04141 Protein processing in endoplasmic reticulum 3
bdi03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03050 Proteasome 13
cre04141 Protein processing in endoplasmic reticulum 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 18099502 7476798 7489348 100814162 100819019 100813881 25488002 25499820 112418701 833835 838188 844304 103858967 103850114 103842858 100267246 100245820 100244610 107891755 107919971 107913821 106352651 106429448 106438939 102614644 102620700 102610300 101251966 101258124 101246007 102604588 102577665 102599587 107796487 107783697 107764526 4347014 4345632 4328500 100283179 100282427 100274222 123132493 123121483 123136563 123407404 123396360 8079399 110432948 110430980 100830156 100838271 100823267 5721666
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