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Orthologous genes in OrthoFinder**

Species Gene Description
 ppo-m.4   7488994   xylose isomerase 
 ppo-u.5   7488994   xylose isomerase 
 ppo-r.4   7488994   xylose isomerase 
 gma-u.5   100804624   xylose isomerase 
 mtr-u.5   11445818   xylose isomerase 
 ath-u.5   AT5G57655   xylose isomerase family protein 
 bra-r.6   103845199   xylose isomerase 
 vvi-u.5   100254769   xylose isomerase 
 ghi-r.1   107928053   xylose isomerase 
 ghi-r.1   107904720   xylose isomerase 
 ghi-r.1   107904426   xylose isomerase 
 bna-r.1   106401314   xylose isomerase 
 bna-r.1   106361633   xylose isomerase 
 cit-r.1   102622248   xylose isomerase 
 sly-u.5   101266649   xylose isomerase 
 sot-r.1   102582159   xylose isomerase 
 nta-r.1   107803724   xylose isomerase 
 nta-r.1   107761872   xylose isomerase 
 osa-u.5   4344231   xylose isomerase 
 zma-u.5   100194128   uncharacterized LOC100194128 
 zma-u.5   100194385   putative xylose isomerase family protein 
 tae-r.2   123051637   xylose isomerase 
 tae-r.2   123043781   xylose isomerase 
 tae-r.2   123187571   xylose isomerase 
 hvu-r.1   123424790   xylose isomerase 
 sbi-r.1   110432936   xylose isomerase 
 bdi-r.1   100844241   xylose isomerase 

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Top 50 coexpressed genes to 7488994 (ppo-m.4 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 7488994 (ppo-m.4 coexpression data)

CoexMap"7488994"


ppoLOC7488994 | Entrez gene ID : 7488994    
Species ppo gma mtr ath bra vvi ghi bna cit sly sot nta osa zma tae hvu sbi bdi cre
Paralog 3 1 1 1 1 1 3 2 1 1 1 2 1 2 3 1 1 1 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG pop00040 [list] [network] Pentose and glucuronate interconversions (140 genes)
pop00051 [list] [network] Fructose and mannose metabolism (73 genes)
GO BP
GO:0005975 [list] [network] carbohydrate metabolic process  (863 genes)  IEA  
GO CC
GO MF
GO:0009045 [list] [network] xylose isomerase activity  (1 genes)  IEA  
Protein XP_002324488.1 [sequence] [blastp]
XP_024448565.1 [sequence] [blastp]
XP_024448566.1 [sequence] [blastp]
XP_024448567.1 [sequence] [blastp]
Subcellular
localization
wolf
mito 3,  E.R. 2,  cyto 1,  chlo_mito 1,  mito_plas 1  (predict for XP_002324488.1)
mito 3,  cyto 2,  cyto_nucl 1,  chlo_mito 1,  mito_plas 1  (predict for XP_024448565.1)
mito 3,  E.R. 2,  cyto 1,  chlo_mito 1,  mito_plas 1  (predict for XP_024448566.1)
mito 3,  E.R. 2,  cyto 1,  chlo_mito 1,  mito_plas 1  (predict for XP_024448567.1)
Subcellular
localization
TargetP
scret 9  (predict for XP_002324488.1)
scret 9  (predict for XP_024448565.1)
scret 9  (predict for XP_024448566.1)
scret 9  (predict for XP_024448567.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ppo-m.4
for
7488994
ppo-u.5
for
7488994
ppo-r.4
for
7488994
gma-u.5
for
100804624
mtr-u.5
for
11445818
ath-u.5
for
AT5G57655
bra-r.6
for
103845199
vvi-u.5
for
100254769
ghi-r.1
for
107928053
ghi-r.1
for
107904720
ghi-r.1
for
107904426
bna-r.1
for
106401314
bna-r.1
for
106361633
cit-r.1
for
102622248
sly-u.5
for
101266649
sot-r.1
for
102582159
nta-r.1
for
107803724
nta-r.1
for
107761872
osa-u.5
for
4344231
zma-u.5
for
100194128
zma-u.5
for
100194385
tae-r.2
for
123051637
tae-r.2
for
123043781
tae-r.2
for
123187571
hvu-r.1
for
123424790
sbi-r.1
for
110432936
bdi-r.1
for
100844241


Ortholog ID: 10403
Species ppo gma mtr ath bra vvi ghi ghi ghi bna bna cit sly sot nta nta osa zma zma tae tae tae hvu sbi bdi
Symbol LOC7488994 LOC100804624 LOC11445818 AT5G57655 LOC103845199 LOC100254769 LOC107928053 LOC107904720 LOC107904426 LOC106401314 LOC106361633 LOC102622248 LOC101266649 LOC102582159 LOC107803724 LOC107761872 LOC4344231 LOC100194128 LOC100194385 LOC123051637 LOC123043781 LOC123187571 LOC123424790 LOC110432936 LOC100844241
Function* xylose isomerase xylose isomerase xylose isomerase xylose isomerase family protein xylose isomerase xylose isomerase xylose isomerase xylose isomerase xylose isomerase xylose isomerase xylose isomerase xylose isomerase xylose isomerase xylose isomerase xylose isomerase xylose isomerase xylose isomerase uncharacterized LOC100194128 putative xylose isomerase family protein xylose isomerase xylose isomerase xylose isomerase xylose isomerase xylose isomerase xylose isomerase
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00280 Valine, leucine and isoleucine degradation 4
ppo00071 Fatty acid degradation 3
ppo00330 Arginine and proline metabolism 3
ppo00380 Tryptophan metabolism 3
ppo01200 Carbon metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00430 Taurine and hypotaurine metabolism 3
gma01240 Biosynthesis of cofactors 2
gma00460 Cyanoamino acid metabolism 2
gma00480 Glutathione metabolism 2
gma00590 Arachidonic acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00280 Valine, leucine and isoleucine degradation 5
mtr00071 Fatty acid degradation 3
mtr04120 Ubiquitin mediated proteolysis 2
mtr00640 Propanoate metabolism 2
mtr00520 Amino sugar and nucleotide sugar metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00280 Valine, leucine and isoleucine degradation 9
ath00640 Propanoate metabolism 5
ath01210 2-Oxocarboxylic acid metabolism 5
ath00785 Lipoic acid metabolism 4
ath00520 Amino sugar and nucleotide sugar metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00280 Valine, leucine and isoleucine degradation 5
bra01200 Carbon metabolism 5
bra01210 2-Oxocarboxylic acid metabolism 4
bra00640 Propanoate metabolism 3
bra00250 Alanine, aspartate and glutamate metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00280 Valine, leucine and isoleucine degradation 6
vvi00071 Fatty acid degradation 5
vvi01212 Fatty acid metabolism 4
vvi00310 Lysine degradation 3
vvi00380 Tryptophan metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00040 Pentose and glucuronate interconversions 4
ghi00051 Fructose and mannose metabolism 4
ghi00430 Taurine and hypotaurine metabolism 2
ghi00460 Cyanoamino acid metabolism 2
ghi00480 Glutathione metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00280 Valine, leucine and isoleucine degradation 7
ghi00071 Fatty acid degradation 4
ghi01212 Fatty acid metabolism 4
ghi01200 Carbon metabolism 4
ghi00040 Pentose and glucuronate interconversions 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00280 Valine, leucine and isoleucine degradation 7
ghi00561 Glycerolipid metabolism 4
ghi00564 Glycerophospholipid metabolism 4
ghi04070 Phosphatidylinositol signaling system 4
ghi00040 Pentose and glucuronate interconversions 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00071 Fatty acid degradation 7
bna00592 alpha-Linolenic acid metabolism 7
bna01212 Fatty acid metabolism 7
bna00240 Pyrimidine metabolism 3
bna00410 beta-Alanine metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00071 Fatty acid degradation 7
bna00592 alpha-Linolenic acid metabolism 7
bna01212 Fatty acid metabolism 7
bna00240 Pyrimidine metabolism 2
bna00410 beta-Alanine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00330 Arginine and proline metabolism 4
cit00053 Ascorbate and aldarate metabolism 3
cit00250 Alanine, aspartate and glutamate metabolism 3
cit01230 Biosynthesis of amino acids 3
cit00071 Fatty acid degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00280 Valine, leucine and isoleucine degradation 5
sly00310 Lysine degradation 2
sly00052 Galactose metabolism 2
sly00520 Amino sugar and nucleotide sugar metabolism 2
sly01250 Biosynthesis of nucleotide sugars 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00500 Starch and sucrose metabolism 4
sot00280 Valine, leucine and isoleucine degradation 4
sot00310 Lysine degradation 2
sot00040 Pentose and glucuronate interconversions 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00280 Valine, leucine and isoleucine degradation 5
nta01210 2-Oxocarboxylic acid metabolism 5
nta00330 Arginine and proline metabolism 4
nta01230 Biosynthesis of amino acids 4
nta00640 Propanoate metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00280 Valine, leucine and isoleucine degradation 5
nta01210 2-Oxocarboxylic acid metabolism 5
nta01230 Biosynthesis of amino acids 4
nta00640 Propanoate metabolism 3
nta00785 Lipoic acid metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00511 Other glycan degradation 3
osa00600 Sphingolipid metabolism 2
osa00040 Pentose and glucuronate interconversions 2
osa00052 Galactose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00190 Oxidative phosphorylation 5
zma04145 Phagosome 5
zma04142 Lysosome 2
zma00620 Pyruvate metabolism 2
zma01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00280 Valine, leucine and isoleucine degradation 3
zma00620 Pyruvate metabolism 3
zma00561 Glycerolipid metabolism 2
zma00040 Pentose and glucuronate interconversions 2
zma00051 Fructose and mannose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00040 Pentose and glucuronate interconversions 7
tae00052 Galactose metabolism 5
tae00561 Glycerolipid metabolism 3
tae00600 Sphingolipid metabolism 3
tae00603 Glycosphingolipid biosynthesis - globo and isoglobo series 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00040 Pentose and glucuronate interconversions 6
tae00052 Galactose metabolism 5
tae00010 Glycolysis / Gluconeogenesis 3
tae00520 Amino sugar and nucleotide sugar metabolism 3
tae01250 Biosynthesis of nucleotide sugars 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00040 Pentose and glucuronate interconversions 6
tae00520 Amino sugar and nucleotide sugar metabolism 5
tae01250 Biosynthesis of nucleotide sugars 5
tae00052 Galactose metabolism 5
tae00561 Glycerolipid metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00280 Valine, leucine and isoleucine degradation 5
hvu00620 Pyruvate metabolism 2
hvu00710 Carbon fixation by Calvin cycle 2
hvu01200 Carbon metabolism 2
hvu00071 Fatty acid degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00190 Oxidative phosphorylation 3
sbi04145 Phagosome 3
sbi04146 Peroxisome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00520 Amino sugar and nucleotide sugar metabolism 4
bdi00511 Other glycan degradation 2
bdi00052 Galactose metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 7488994 100804624 11445818 835871 103845199 100254769 107928053 107904720 107904426 106401314 106361633 102622248 101266649 102582159 107803724 107761872 4344231 100194128 100194385 123051637 123043781 123187571 123424790 110432936 100844241
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