ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
ppo-m.4	7493222	sister chromatid cohesion protein PDS5 homolog D
ppo-u.5	7493222	sister chromatid cohesion protein PDS5 homolog D
ppo-r.4	7493222	sister chromatid cohesion protein PDS5 homolog D
ppo-u.5	7485299	sister chromatid cohesion protein PDS5 homolog C
ppo-u.5	7487059	sister chromatid cohesion protein PDS5 homolog D
ppo-u.5	7465412	sister chromatid cohesion protein PDS5 homolog C
gma-u.5	100818050	uncharacterized LOC100818050
mtr-u.5	25491183	uncharacterized LOC25491183
mtr-u.5	11442229	triadin
mtr-u.5	11437017	sister chromatid cohesion protein PDS5
ath-u.5	AT4G31880	transcriptional regulator
ath-u.5	AT5G10950	Tudor/PWWP/MBT superfamily protein
ath-u.5	AT1G15940	Tudor/PWWP/MBT superfamily protein
bra-r.6	103862094	neurofilament heavy polypeptide
bra-r.6	103842872	cinnamoyl-CoA reductase 1
bra-r.6	103832454	glutamic acid-rich protein
ghi-r.1	121231990	protein IWS1 homolog A
ghi-r.1	107961680	uncharacterized LOC107961680
ghi-r.1	107906837	triadin
bna-r.1	106423380	sister chromatid cohesion protein PDS5 homolog C
bna-r.1	106430116	sister chromatid cohesion protein PDS5 homolog D
bna-r.1	106430760	sister chromatid cohesion protein PDS5 homolog D-like
cit-r.1	102624143	sister chromatid cohesion protein PDS5 homolog C
cit-r.1	102614026	sister chromatid cohesion protein PDS5 homolog C-like
sly-u.5	101253678	sister chromatid cohesion protein PDS5 homolog D-like
sot-r.1	102591295	uncharacterized LOC102591295
sot-r.1	102605879	muscle M-line assembly protein unc-89
sot-r.1	102591968	uncharacterized LOC102591968
nta-r.1	107772387	sister chromatid cohesion protein PDS5 homolog D-like
nta-r.1	107767311	sister chromatid cohesion protein PDS5 homolog D
nta-r.1	107830807	sister chromatid cohesion protein PDS5 homolog D
osa-u.5	4336311	sister chromatid cohesion protein PDS5 homolog C
osa-u.5	4335488	sister chromatid cohesion protein PDS5 homolog D
osa-u.5	4329966	sister chromatid cohesion protein PDS5 homolog C
zma-u.5	103641817	enolase-phosphatase E1
zma-u.5	109939418	uncharacterized LOC109939418
zma-u.5	103646255	titin homolog
tae-r.2	123045941	nucleolar protein dao-5
tae-r.2	123127794	uncharacterized LOC123127794
hvu-r.1	123401818	neurofilament heavy polypeptide-like
hvu-r.1	123427162	ABC transporter F family member 4-like
sbi-r.1	8066696	uncharacterized LOC8066696
sbi-r.1	8060213	enolase-phosphatase E1
sbi-r.1	8071467	MATH and LRR domain-containing protein PFE0570w
bdi-r.1	100825062	uncharacterized LOC100825062
bdi-r.1	100823597	muscle M-line assembly protein unc-89
cre-r.1	CHLRE_02g099601v5	uncharacterized protein
cre-r.1	CHLRE_01g032550v5	uncharacterized protein

Top 50 coexpressed genes to 7493222 (ppo-m.4 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 7493222 (ppo-m.4 coexpression data)

CoexMap"7493222"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO:0007064 [list] [network] mitotic sister chromatid cohesion	(23 genes)	IEA
GO:0006281 [list] [network] DNA repair	(290 genes)	IEA

GO CC

GO:0000785 [list] [network] chromatin	(236 genes)	IEA
GO:0005634 [list] [network] nucleus	(3662 genes)	IEA

GO MF

Protein

XP_024452126.2 [sequence] [blastp]
XP_024452127.2 [sequence] [blastp]

Subcellular
localization
wolf

nucl 10	(predict for XP_024452126.2)
nucl 10	(predict for XP_024452127.2)

Subcellular
localization
TargetP

other 7, chlo 3	(predict for XP_024452126.2)
other 7, chlo 3	(predict for XP_024452127.2)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target			Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ppo-m.4 for 7493222	ppo-u.5 for 7493222	ppo-r.4 for 7493222	ppo-u.5 for 7485299	ppo-u.5 for 7487059	ppo-u.5 for 7465412	gma-u.5 for 100818050	mtr-u.5 for 25491183	mtr-u.5 for 11442229	mtr-u.5 for 11437017	ath-u.5 for AT4G31880	ath-u.5 for AT5G10950	ath-u.5 for AT1G15940	bra-r.6 for 103862094	bra-r.6 for 103842872	bra-r.6 for 103832454	ghi-r.1 for 121231990	ghi-r.1 for 107961680	ghi-r.1 for 107906837	bna-r.1 for 106423380	bna-r.1 for 106430116	bna-r.1 for 106430760	cit-r.1 for 102624143	cit-r.1 for 102614026	sly-u.5 for 101253678	sot-r.1 for 102591295	sot-r.1 for 102605879	sot-r.1 for 102591968	nta-r.1 for 107772387	nta-r.1 for 107767311	nta-r.1 for 107830807	osa-u.5 for 4336311	osa-u.5 for 4335488	osa-u.5 for 4329966	zma-u.5 for 103641817	zma-u.5 for 109939418	zma-u.5 for 103646255	tae-r.2 for 123045941	tae-r.2 for 123127794	hvu-r.1 for 123401818	hvu-r.1 for 123427162	sbi-r.1 for 8066696	sbi-r.1 for 8060213	sbi-r.1 for 8071467	bdi-r.1 for 100825062	bdi-r.1 for 100823597	cre-r.1 for CHLRE_02g099601v5	cre-r.1 for CHLRE_01g032550v5

Ortholog

Ortholog ID: 597

Species

ppo

gma

mtr

ath

bra

vvi

ghi

bna

cit

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

Function^*

sister chromatid cohesion protein PDS5 homolog D

uncharacterized LOC7493403

muscle M-line assembly protein unc-89

uncharacterized LOC100812058

triadin

sister chromatid cohesion protein PDS5

muscle M-line assembly protein unc-89

transcriptional regulator

Tudor/PWWP/MBT superfamily protein

neurofilament heavy polypeptide

cinnamoyl-CoA reductase 1

DEAD-box ATP-dependent RNA helicase 28

sister chromatid cohesion protein PDS5 homolog C

triadin

WASH complex subunit 2

sister chromatid cohesion protein PDS5 homolog D-like

sister chromatid cohesion protein PDS5 homolog C-like

sister chromatid cohesion protein PDS5 homolog E-like

sister chromatid cohesion protein PDS5 homolog C

sister chromatid cohesion protein PDS5 homolog C-like

sister chromatid cohesion protein PDS5 homolog D-like

sister chromatid cohesion protein PDS5 homolog E

uncharacterized LOC102591295

muscle M-line assembly protein unc-89

uncharacterized LOC102591624

sister chromatid cohesion protein PDS5 homolog D

sister chromatid cohesion protein PDS5 homolog C-like

sister chromatid cohesion protein PDS5 homolog C

sister chromatid cohesion protein PDS5 homolog D

sister chromatid cohesion protein PDS5 homolog C

titin homolog

uncharacterized LOC103653756

sister chromatid cohesion protein PDS5 homolog B-B-like

nucleolar protein dao-5

neurofilament heavy polypeptide

neurofilament heavy polypeptide-like

ABC transporter F family member 4-like

enolase-phosphatase E1

MATH and LRR domain-containing protein PFE0570w

microtubule-associated protein futsch

uncharacterized LOC100825062

muscle M-line assembly protein unc-89

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03410	Base excision repair	3
ppo00010	Glycolysis / Gluconeogenesis	2
ppo01200	Carbon metabolism	2
ppo01230	Biosynthesis of amino acids	2
ppo03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03420	Nucleotide excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00310	Lysine degradation	2
gma03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03040	Spliceosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03013	Nucleocytoplasmic transport	3
bra03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03250	Viral life cycle - HIV-1	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03040	Spliceosome	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03020	RNA polymerase	4
ghi03013	Nucleocytoplasmic transport	2
ghi03460	Fanconi anemia pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03040	Spliceosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot00190	Oxidative phosphorylation	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03250	Viral life cycle - HIV-1	2
sot03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03083	Polycomb repressive complex	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03410	Base excision repair	2
osa03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03013	Nucleocytoplasmic transport	3
tae03015	mRNA surveillance pathway	3
tae03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03013	Nucleocytoplasmic transport	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu04814	Motor proteins	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03040	Spliceosome	2
sbi03450	Non-homologous end-joining	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03450	Non-homologous end-joining	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03013	Nucleocytoplasmic transport	2
sbi03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03082	ATP-dependent chromatin remodeling	3
bdi03013	Nucleocytoplasmic transport	2
bdi03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03040	Spliceosome	3
bdi03013	Nucleocytoplasmic transport	2

Expression

Expression pattern

Entrez Gene ID^*

7493222

7487059

7493403

100790092

100812058

11442229

11437017

11423336

829318

838164

844420

103862094

103842872

103855892

100248351

100260975

107906837

107906838

107953744

106430760

106420502

106346800

102624143

102614026

101253678

101246231

102591295

102605879

102591624

107767311

107830807

107772436

4336311

4335488

9266945

103646255

103653756

103654690

123045941

123137451

123144807

123401818

123427162

8060213

8071467

8059675

100825062

100823597

66052408

5715404

The preparation time of this page was 0.3 [sec].


Species	ppo	gma	mtr	ath	bra	ghi	bna	cit	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre	vvi
Paralog	6	1	3	3	3	3	3	2	1	3	3	3	3	2	2	3	2	2	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 7493222 (ppo-m.4 coexpression data)

Top 50 enrichment test to 7493222 (ppo-m.4 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**