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Orthologous genes in OrthoFinder**

Species Gene Description
 ppo-r.4   7471949   transcription factor RADIALIS 
 ppo-u.5   7471949   transcription factor RADIALIS 
 ppo-m.4   7471949   transcription factor RADIALIS 
 ppo-u.5   7464028   protein RADIALIS-like 2 
 mtr-u.5   11408177   protein RADIALIS-like 1 
 ath-u.5   RL4   RAD-like 4 
 ath-u.5   MEE3   Homeodomain-like superfamily protein 
 bra-r.6   103831984   protein RADIALIS-like 6 
 bra-r.6   103829479   protein RADIALIS-like 5 
 bra-r.6   103874077   protein RADIALIS-like 4 
 ghi-r.1   107908177   protein RADIALIS-like 2 
 ghi-r.1   107905436   protein RADIALIS-like 6 
 bna-r.1   125589866   protein RADIALIS-like 5 
 bna-r.1   106432744   protein RADIALIS-like 4 
 cit-r.1   102630994   protein RADIALIS-like 4 
 cit-r.1   102610870   protein RADIALIS-like 3 
 cit-r.1   102613839   protein RADIALIS-like 6 
 sly-u.5   101246530   protein RADIALIS-like 3 
 sly-u.5   101247471   protein RADIALIS-like 4 
 sot-r.1   107061001   protein RADIALIS-like 1 
 sot-r.1   102592750   protein RADIALIS-like 3 
 nta-r.1   107772557   protein RADIALIS-like 1 
 nta-r.1   107784162   protein RADIALIS-like 3 
 osa-u.5   4326605   protein RADIALIS-like 2 
 osa-u.5   9269452   protein RADIALIS-like 1 
 zma-u.5   100284980   uncharacterized LOC100284980 
 zma-u.5   100284746   uncharacterized LOC100284746 
 zma-u.5   100281018   uncharacterized LOC100281018 
 tae-r.2   123137928   protein RADIALIS-like 4 
 tae-r.2   123128132   protein RADIALIS-like 4 
 hvu-r.1   123451785   protein RADIALIS-like 3 
 hvu-r.1   123451776   protein RADIALIS-like 3 
 hvu-r.1   123451766   protein RADIALIS-like 3 
 sbi-r.1   8064723   protein RADIALIS-like 3 
 sbi-r.1   8058207   protein RADIALIS-like 3 
 sbi-r.1   8073158   protein RADIALIS-like 3 
 bdi-r.1   100846607   protein RADIALIS-like 4 
 bdi-r.1   100823169   protein RADIALIS-like 4 
 bdi-r.1   100827355   protein RADIALIS-like 4 

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Top 50 coexpressed genes to 7471949 (ppo-r.4 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 7471949 (ppo-r.4 coexpression data)

CoexMap""


ppoLOC7471949 | Entrez gene ID : 7471949    
Species ppo mtr ath bra ghi bna cit sly sot nta osa zma tae hvu sbi bdi cre vvi gma
Paralog 4 1 2 3 2 2 3 2 2 2 2 3 2 3 3 3 0 0 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
Function transcription factor RADIALIS
KEGG
GO BP
GO CC
GO MF
GO:0003700 [list] [network] DNA-binding transcription factor activity  (1363 genes)  IEA  
Protein XP_002300766.3 [sequence] [blastp]
Subcellular
localization
wolf
chlo 4,  nucl 4,  nucl_plas 3,  plas 1  (predict for XP_002300766.3)
Subcellular
localization
TargetP
other 6  (predict for XP_002300766.3)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ppo-r.4
for
7471949
ppo-u.5
for
7471949
ppo-m.4
for
7471949
ppo-u.5
for
7464028
mtr-u.5
for
11408177
ath-u.5
for
RL4
ath-u.5
for
MEE3
bra-r.6
for
103831984
bra-r.6
for
103829479
bra-r.6
for
103874077
ghi-r.1
for
107908177
ghi-r.1
for
107905436
bna-r.1
for
125589866
bna-r.1
for
106432744
cit-r.1
for
102630994
cit-r.1
for
102610870
cit-r.1
for
102613839
sly-u.5
for
101246530
sly-u.5
for
101247471
sot-r.1
for
107061001
sot-r.1
for
102592750
nta-r.1
for
107772557
nta-r.1
for
107784162
osa-u.5
for
4326605
osa-u.5
for
9269452
zma-u.5
for
100284980
zma-u.5
for
100284746
zma-u.5
for
100281018
tae-r.2
for
123137928
tae-r.2
for
123128132
hvu-r.1
for
123451785
hvu-r.1
for
123451776
hvu-r.1
for
123451766
sbi-r.1
for
8064723
sbi-r.1
for
8058207
sbi-r.1
for
8073158
bdi-r.1
for
100846607
bdi-r.1
for
100823169
bdi-r.1
for
100827355

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Ortholog ID: 327
Species ppo ppo gma mtr ath ath bra bra bra ghi ghi ghi bna cit cit cit sly sly sly sot nta osa osa osa zma zma zma tae tae tae hvu hvu hvu sbi sbi sbi bdi bdi bdi
Symbol LOC7471949 LOC7480132 LOC100804396 LOC11413763 RL4 MEE3 LOC103874077 LOC103852941 LOC103834985 LOC107928859 LOC121212191 LOC107897630 LOC106370064 LOC102630994 LOC102613839 LOC102625117 LOC101246530 LOC101261869 fsm1 LOC107061001 LOC107792932 LOC4326605 LOC9269452 LOC4339715 LOC100284980 LOC100284746 LOC100281018 LOC123182346 LOC123182340 LOC123145223 LOC123451776 LOC123451766 LOC123409188 LOC8064723 LOC8058207 LOC8073158 LOC100846607 LOC100823169 LOC100828980
Function* transcription factor RADIALIS protein RADIALIS-like 3 protein RADIALIS-like 1 protein RADIALIS-like 1 RAD-like 4 Homeodomain-like superfamily protein protein RADIALIS-like 4 protein RADIALIS-like 6 protein RADIALIS-like 3 protein RADIALIS-like 2 protein RADIALIS-like 1 protein RADIALIS-like 3 protein RADIALIS-like 3 protein RADIALIS-like 4 protein RADIALIS-like 6 protein RADIALIS-like 3 protein RADIALIS-like 3 protein RADIALIS-like 5 SANT/MYB domain protein protein RADIALIS-like 1 protein RADIALIS-like 4 protein RADIALIS-like 2 protein RADIALIS-like 1 protein RADIALIS-like 3 uncharacterized LOC100284980 uncharacterized LOC100284746 uncharacterized LOC100281018 protein RADIALIS-like 3 protein RADIALIS-like 3 protein RADIALIS-like 4 protein RADIALIS-like 3 protein RADIALIS-like 3 protein RADIALIS-like 4 protein RADIALIS-like 3 protein RADIALIS-like 3 protein RADIALIS-like 3 protein RADIALIS-like 4 protein RADIALIS-like 4 protein RADIALIS-like 3
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00280 Valine, leucine and isoleucine degradation 2
mtr01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04075 Plant hormone signal transduction 3
bra04070 Phosphatidylinositol signaling system 2
bra00220 Arginine biosynthesis 2
bra00250 Alanine, aspartate and glutamate metabolism 2
bra00630 Glyoxylate and dicarboxylate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00040 Pentose and glucuronate interconversions 9
ghi04075 Plant hormone signal transduction 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00740 Riboflavin metabolism 2
cit04142 Lysosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00040 Pentose and glucuronate interconversions 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00910 Nitrogen metabolism 3
sbi01310 Nitrogen cycle 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04626 Plant-pathogen interaction 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 7471949 7480132 100804396 11413763 5007884 816703 103874077 103852941 103834985 107928859 121212191 107897630 106370064 102630994 102613839 102625117 101246530 101261869 543759 107061001 107792932 4326605 9269452 4339715 100284980 100284746 100281018 123182346 123182340 123145223 123451776 123451766 123409188 8064723 8058207 8073158 100846607 100823169 100828980
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