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Orthologous genes in OrthoFinder**

Species Gene Description
 ppo-r.4   7485142   homogentisate 1,2-dioxygenase 
 ppo-u.5   7485142   homogentisate 1,2-dioxygenase 
 ppo-m.4   7485142   homogentisate 1,2-dioxygenase 
 gma-u.5   HGO1   homogentisate 1,2-dioxygenase 
 gma-u.5   HGO2   homogentisate 1,2-dioxygenase 
 mtr-u.5   25502511   homogentisate 1,2-dioxygenase 
 ath-u.5   HGO   homogentisate 1,2-dioxygenase 
 bra-r.6   103851993   homogentisate 1,2-dioxygenase 
 vvi-u.5   100264043   homogentisate 1,2-dioxygenase 
 ghi-r.1   107917989   homogentisate 1,2-dioxygenase 
 ghi-r.1   107939200   homogentisate 1,2-dioxygenase 
 bna-r.1   106380944   homogentisate 1,2-dioxygenase 
 bna-r.1   106390253   homogentisate 1,2-dioxygenase 
 cit-r.1   102613255   homogentisate 1,2-dioxygenase 
 sly-u.5   543605   homogentisate 1,2-dioxygenase 
 sot-r.1   102579798   homogentisate 1,2-dioxygenase 
 nta-r.1   107770720   homogentisate 1,2-dioxygenase-like 
 nta-r.1   107764203   homogentisate 1,2-dioxygenase 
 osa-u.5   4339844   homogentisate 1,2-dioxygenase-like 
 zma-u.5   100192757   uncharacterized LOC100192757 
 tae-r.2   123151102   homogentisate 1,2-dioxygenase 
 tae-r.2   123164099   homogentisate 1,2-dioxygenase 
 tae-r.2   123088644   homogentisate 1,2-dioxygenase 
 hvu-r.1   123407136   homogentisate 1,2-dioxygenase 
 sbi-r.1   8066857   homogentisate 1,2-dioxygenase 
 bdi-r.1   100823907   homogentisate 1,2-dioxygenase 
 cre-r.1   CHLRE_02g091200v5   uncharacterized protein 

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Top 50 coexpressed genes to 7485142 (ppo-r.4 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 7485142 (ppo-r.4 coexpression data)

CoexMap"7485142"


ppoLOC7485142 | Entrez gene ID : 7485142    
Species ppo gma mtr ath bra vvi ghi bna cit sly sot nta osa zma tae hvu sbi bdi cre
Paralog 3 2 1 1 1 1 2 2 1 1 1 2 1 1 3 1 1 1 1
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG pop00350 [list] [network] Tyrosine metabolism (69 genes)
GO BP
GO:0006570 [list] [network] tyrosine metabolic process  (6 genes)  IEA  
GO:0006559 [list] [network] L-phenylalanine catabolic process  (8 genes)  IEA  
GO CC
GO:0005737 [list] [network] cytoplasm  (6111 genes)  IEA  
GO MF
GO:0004411 [list] [network] homogentisate 1,2-dioxygenase activity  (1 genes)  IEA  
Protein XP_002298900.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 7,  chlo 1,  cyto 1,  vacu 1,  pero 1,  cyto_pero 1  (predict for XP_002298900.1)
Subcellular
localization
TargetP
other 9  (predict for XP_002298900.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ppo-r.4
for
7485142
ppo-u.5
for
7485142
ppo-m.4
for
7485142
gma-u.5
for
HGO1
gma-u.5
for
HGO2
mtr-u.5
for
25502511
ath-u.5
for
HGO
bra-r.6
for
103851993
vvi-u.5
for
100264043
ghi-r.1
for
107917989
ghi-r.1
for
107939200
bna-r.1
for
106380944
bna-r.1
for
106390253
cit-r.1
for
102613255
sly-u.5
for
543605
sot-r.1
for
102579798
nta-r.1
for
107770720
nta-r.1
for
107764203
osa-u.5
for
4339844
zma-u.5
for
100192757
tae-r.2
for
123151102
tae-r.2
for
123164099
tae-r.2
for
123088644
hvu-r.1
for
123407136
sbi-r.1
for
8066857
bdi-r.1
for
100823907
cre-r.1
for
CHLRE_02g091200v5


Ortholog ID: 10394
Species ppo gma gma mtr ath bra vvi ghi ghi bna bna cit sly sot nta nta osa zma tae tae tae hvu sbi bdi cre
Symbol LOC7485142 HGO1 HGO2 LOC25502511 HGO LOC103851993 LOC100264043 LOC107917989 LOC107939200 LOC106380944 LOC106390253 LOC102613255 LOC543605 LOC102579798 LOC107770720 LOC107764203 LOC4339844 LOC100192757 LOC123151102 LOC123164099 LOC123088644 LOC123407136 LOC8066857 LOC100823907 CHLRE_02g091200v5
Function* homogentisate 1,2-dioxygenase homogentisate 1,2-dioxygenase homogentisate 1,2-dioxygenase homogentisate 1,2-dioxygenase homogentisate 1,2-dioxygenase homogentisate 1,2-dioxygenase homogentisate 1,2-dioxygenase homogentisate 1,2-dioxygenase homogentisate 1,2-dioxygenase homogentisate 1,2-dioxygenase homogentisate 1,2-dioxygenase homogentisate 1,2-dioxygenase homogentisate 1,2-dioxygenase homogentisate 1,2-dioxygenase homogentisate 1,2-dioxygenase-like homogentisate 1,2-dioxygenase homogentisate 1,2-dioxygenase-like uncharacterized LOC100192757 homogentisate 1,2-dioxygenase homogentisate 1,2-dioxygenase homogentisate 1,2-dioxygenase homogentisate 1,2-dioxygenase homogentisate 1,2-dioxygenase homogentisate 1,2-dioxygenase uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00280 Valine, leucine and isoleucine degradation 4
ppo04148 Efferocytosis 2
ppo00770 Pantothenate and CoA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00860 Porphyrin metabolism 3
gma04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00280 Valine, leucine and isoleucine degradation 5
mtr01240 Biosynthesis of cofactors 3
mtr00350 Tyrosine metabolism 3
mtr01210 2-Oxocarboxylic acid metabolism 2
mtr00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00280 Valine, leucine and isoleucine degradation 8
ath01210 2-Oxocarboxylic acid metabolism 4
ath00640 Propanoate metabolism 3
ath01230 Biosynthesis of amino acids 3
ath00785 Lipoic acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04146 Peroxisome 2
bra00260 Glycine, serine and threonine metabolism 2
bra00280 Valine, leucine and isoleucine degradation 2
bra00350 Tyrosine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00071 Fatty acid degradation 5
ghi01212 Fatty acid metabolism 5
ghi04146 Peroxisome 5
ghi00640 Propanoate metabolism 4
ghi00061 Fatty acid biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00640 Propanoate metabolism 6
ghi00071 Fatty acid degradation 5
ghi01212 Fatty acid metabolism 5
ghi04146 Peroxisome 5
ghi00280 Valine, leucine and isoleucine degradation 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00280 Valine, leucine and isoleucine degradation 11
bna00310 Lysine degradation 7
bna00640 Propanoate metabolism 4
bna00785 Lipoic acid metabolism 4
bna01210 2-Oxocarboxylic acid metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00310 Lysine degradation 8
bna00280 Valine, leucine and isoleucine degradation 6
bna00630 Glyoxylate and dicarboxylate metabolism 4
bna01200 Carbon metabolism 4
bna00071 Fatty acid degradation 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00280 Valine, leucine and isoleucine degradation 3
sly00310 Lysine degradation 2
sly00350 Tyrosine metabolism 2
sly00330 Arginine and proline metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00280 Valine, leucine and isoleucine degradation 5
sot00310 Lysine degradation 2
sot00640 Propanoate metabolism 2
sot01200 Carbon metabolism 2
sot01210 2-Oxocarboxylic acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00280 Valine, leucine and isoleucine degradation 10
nta00270 Cysteine and methionine metabolism 4
nta01210 2-Oxocarboxylic acid metabolism 4
nta00310 Lysine degradation 4
nta00260 Glycine, serine and threonine metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00280 Valine, leucine and isoleucine degradation 8
nta00260 Glycine, serine and threonine metabolism 4
nta00310 Lysine degradation 4
nta00052 Galactose metabolism 2
nta00520 Amino sugar and nucleotide sugar metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00280 Valine, leucine and isoleucine degradation 4
osa00071 Fatty acid degradation 4
osa01212 Fatty acid metabolism 3
osa00350 Tyrosine metabolism 2
osa00592 alpha-Linolenic acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00561 Glycerolipid metabolism 2
zma00280 Valine, leucine and isoleucine degradation 2
zma04146 Peroxisome 2
zma04082 Neuroactive ligand signaling 2
zma00350 Tyrosine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00280 Valine, leucine and isoleucine degradation 6
tae04075 Plant hormone signal transduction 3
tae00350 Tyrosine metabolism 3
tae01210 2-Oxocarboxylic acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00350 Tyrosine metabolism 5
tae04075 Plant hormone signal transduction 2
tae00280 Valine, leucine and isoleucine degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00280 Valine, leucine and isoleucine degradation 9
hvu00330 Arginine and proline metabolism 3
hvu00640 Propanoate metabolism 3
hvu00010 Glycolysis / Gluconeogenesis 2
hvu00071 Fatty acid degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00280 Valine, leucine and isoleucine degradation 6
bdi00330 Arginine and proline metabolism 3
bdi01210 2-Oxocarboxylic acid metabolism 2
bdi01230 Biosynthesis of amino acids 2
bdi00310 Lysine degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre00280 Valine, leucine and isoleucine degradation 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 7485142 100801346 100779961 25502511 835494 103851993 100264043 107917989 107939200 106380944 106390253 102613255 543605 102579798 107770720 107764203 4339844 100192757 123151102 123164099 123088644 123407136 8066857 100823907 5727482
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