ATTED-II : GeneCoexpression result

Species	Gene	Description
ppo-u.5	18095968	uncharacterized LOC18095968
ppo-r.4	18095968	uncharacterized LOC18095968
gma-u.5	100800766	uncharacterized LOC100800766
gma-u.5	100796806	uncharacterized LOC100796806
mtr-u.5	25488951	uncharacterized LOC25488951
ath-u.5	EMB2788	ribosome 60S biogenesis amino-terminal protein
bra-r.6	103866760	uncharacterized LOC103866760
vvi-u.5	100264016	uncharacterized LOC100264016
ghi-r.1	107903796	uncharacterized LOC107903796
ghi-r.1	107957221	uncharacterized LOC107957221
bna-r.1	106444870	uncharacterized LOC106444870
bna-r.1	106445539	uncharacterized LOC106445539
cit-r.1	102613555	uncharacterized LOC102613555
sly-u.5	101258227	uncharacterized LOC101258227
sot-r.1	102599460	uncharacterized LOC102599460
nta-r.1	107809215	uncharacterized LOC107809215
nta-r.1	107824626	uncharacterized LOC107824626
osa-u.5	4337062	uncharacterized LOC4337062
zma-u.5	103645921	uncharacterized LOC103645921
tae-r.2	123190309	uncharacterized LOC123190309
tae-r.2	123054423	uncharacterized LOC123054423
tae-r.2	123051699	uncharacterized LOC123051699
hvu-r.1	123427738	uncharacterized LOC123427738
sbi-r.1	8066811	uncharacterized LOC8066811
bdi-r.1	100836046	uncharacterized LOC100836046
cre-r.1	CHLRE_02g074300v5	uncharacterized protein

Annotation

functional annotation

KEGG

GO BP

GO:0000463 [list] [network] maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	(21 genes)	IEA
GO:0000466 [list] [network] maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	(22 genes)	IEA

GO CC

GO:0005730 [list] [network] nucleolus

(220 genes)

IEA

GO MF

Protein

XP_024437884.1 [sequence] [blastp]
XP_024437888.1 [sequence] [blastp]

Subcellular
localization
wolf

plas 6, nucl 1, E.R. 1	(predict for XP_024437884.1)
plas 9, vacu 1, E.R. 1, E.R._vacu 1	(predict for XP_024437888.1)

Subcellular
localization
TargetP

other 9	(predict for XP_024437884.1)
other 6	(predict for XP_024437888.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target		Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ppo-u.5 for 18095968	ppo-r.4 for 18095968	gma-u.5 for 100800766	gma-u.5 for 100796806	mtr-u.5 for 25488951	ath-u.5 for EMB2788	bra-r.6 for 103866760	vvi-u.5 for 100264016	ghi-r.1 for 107903796	ghi-r.1 for 107957221	bna-r.1 for 106444870	bna-r.1 for 106445539	cit-r.1 for 102613555	sly-u.5 for 101258227	sot-r.1 for 102599460	nta-r.1 for 107809215	nta-r.1 for 107824626	osa-u.5 for 4337062	zma-u.5 for 103645921	tae-r.2 for 123190309	tae-r.2 for 123054423	tae-r.2 for 123051699	hvu-r.1 for 123427738	sbi-r.1 for 8066811	bdi-r.1 for 100836046	cre-r.1 for CHLRE_02g074300v5

Ortholog

Ortholog ID: 7677

Species

ppo

gma

mtr

ath

bra

vvi

ghi

bna

cit

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

EMB2788

Function^*

uncharacterized LOC18095968

uncharacterized LOC100800766

uncharacterized LOC100796806

uncharacterized LOC25488951

ribosome 60S biogenesis amino-terminal protein

uncharacterized LOC103866760

uncharacterized LOC100264016

uncharacterized LOC107903796

uncharacterized LOC107957221

uncharacterized LOC106444870

uncharacterized LOC106445539

uncharacterized LOC102613555

uncharacterized LOC101258227

uncharacterized LOC102599460

uncharacterized LOC107809215

uncharacterized LOC107824626

uncharacterized LOC4337062

uncharacterized LOC103645921

uncharacterized LOC123190309

uncharacterized LOC123054423

uncharacterized LOC123045990

uncharacterized LOC123427738

uncharacterized LOC8066811

uncharacterized LOC100836046

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03008	Ribosome biogenesis in eukaryotes	5
ppo03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03008	Ribosome biogenesis in eukaryotes	3
gma03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03040	Spliceosome	5
gma03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03008	Ribosome biogenesis in eukaryotes	3
mtr03020	RNA polymerase	2
mtr03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03013	Nucleocytoplasmic transport	4
ath03008	Ribosome biogenesis in eukaryotes	4
ath03020	RNA polymerase	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03013	Nucleocytoplasmic transport	3
bra03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03008	Ribosome biogenesis in eukaryotes	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03013	Nucleocytoplasmic transport	10
ghi03020	RNA polymerase	2
ghi04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03013	Nucleocytoplasmic transport	10
ghi04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03020	RNA polymerase	2
bna03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03040	Spliceosome	6
cit03022	Basal transcription factors	2
cit03420	Nucleotide excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03008	Ribosome biogenesis in eukaryotes	3
sly03013	Nucleocytoplasmic transport	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03040	Spliceosome	3
sot03082	ATP-dependent chromatin remodeling	2
sot03022	Basal transcription factors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03013	Nucleocytoplasmic transport	5
nta00230	Purine metabolism	2
nta01232	Nucleotide metabolism	2
nta04820	Cytoskeleton in muscle cells	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03013	Nucleocytoplasmic transport	4
nta03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03008	Ribosome biogenesis in eukaryotes	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03008	Ribosome biogenesis in eukaryotes	2
zma03013	Nucleocytoplasmic transport	2
zma03020	RNA polymerase	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03008	Ribosome biogenesis in eukaryotes	5
tae03020	RNA polymerase	3
tae03460	Fanconi anemia pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03008	Ribosome biogenesis in eukaryotes	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03018	RNA degradation	2
sbi03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04120	Ubiquitin mediated proteolysis	2
bdi03082	ATP-dependent chromatin remodeling	2

Expression

Expression pattern

Entrez Gene ID^*

18095968

100800766

100796806

25488951

828809

103866760

100264016

107903796

107957221

106444870

106445539

102613555

101258227

102599460

107809215

107824626

4337062

103645921

123190309

123054423

123045990

123427738

8066811

100836046

5727176

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to 18095968 (ppo-u.5 coexpression data)

Top 50 enrichment test to 18095968 (ppo-u.5 coexpression data)


Species	ppo	gma	mtr	ath	bra	vvi	ghi	bna	cit	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	2	2	1	1	1	1	2	2	1	1	1	2	1	1	3	1	1	1	1

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 18095968 (ppo-u.5 coexpression data)

Top 50 enrichment test to 18095968 (ppo-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**