ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
ppo-u.5	7471133	uncharacterized LOC7471133
ppo-r.4	7471133	uncharacterized LOC7471133
ppo-u.5	18096172	glycine-rich cell wall structural protein 2
ppo-u.5	7490625	uncharacterized LOC7490625
ppo-u.5	7493993	uncharacterized LOC7493993
gma-u.5	100804648	protein argonaute 18
gma-u.5	100790146	ribonuclease P protein subunit p25-like protein
gma-u.5	100499751	uncharacterized LOC100499751
mtr-u.5	11415491	glycine-rich protein DOT1
mtr-u.5	11418512	ribonuclease P protein subunit p25-like protein
mtr-u.5	11424590	ribonuclease P protein subunit p25-like protein
ath-u.5	AT1G20220	Alba DNA/RNA-binding protein
ath-u.5	AT1G76010	Alba DNA/RNA-binding protein
ath-u.5	AT3G07030	Alba DNA/RNA-binding protein
bra-r.6	103830627	pro-resilin
bra-r.6	103835805	glycine-rich cell wall structural protein 1.0
vvi-u.5	100257974	uncharacterized LOC100257974
vvi-u.5	100254082	uncharacterized LOC100254082
vvi-u.5	100254260	uncharacterized LOC100254260
ghi-r.1	107922521	ribonuclease P protein subunit p25-like protein
ghi-r.1	107917987	ribonuclease P protein subunit p25-like protein
ghi-r.1	107912589	ribonuclease P protein subunit p25-like protein
bna-r.1	106440745	protein FAM98A
bna-r.1	106431173	polyribonucleotide nucleotidyltransferase-like
bna-r.1	106424962	protein argonaute 18
cit-r.1	102624664	uncharacterized LOC102624664
cit-r.1	102620254	uncharacterized LOC102620254
cit-r.1	102618414	uncharacterized LOC102618414
sly-u.5	101245250	uncharacterized LOC101245250
sly-u.5	101245178	uncharacterized LOC101245178
sot-r.1	102579263	ribonuclease P protein subunit p25-like protein
sot-r.1	102582242	protein argonaute 18-like
sot-r.1	102602957	RNA-binding protein FUS
nta-r.1	107816710	uncharacterized LOC107816710
nta-r.1	107798331	uncharacterized LOC107798331
osa-u.5	4349880	uncharacterized LOC4349880
osa-u.5	4334023	uncharacterized LOC4334023
osa-u.5	4347736	uncharacterized LOC4347736
zma-u.5	103625906	glycine-rich cell wall structural protein 1.8
zma-u.5	100280198	Alba DNA/RNA-binding protein
zma-u.5	100276330	uncharacterized LOC100276330
tae-r.2	123053309	ribonuclease P protein subunit p25
tae-r.2	123091023	protein argonaute 18
tae-r.2	123084813	TATA-binding protein-associated factor 2N
hvu-r.1	123449533	TATA-binding protein-associated factor 2N-like
hvu-r.1	123400204	protein argonaute 18-like
hvu-r.1	123426723	ribonuclease P protein subunit p25-like protein
sbi-r.1	8077605	ribonuclease P protein subunit p25-like protein
sbi-r.1	8070680	RNA-binding protein FUS
sbi-r.1	8063330	ribonuclease P protein subunit p25-like protein
bdi-r.1	100824218	uncharacterized LOC100824218
bdi-r.1	100825987	cold and drought-regulated protein CORA
bdi-r.1	100830556	glycine-rich cell wall structural protein 1.8
cre-r.1	CHLRE_09g409500v5	uncharacterized protein

Top 50 coexpressed genes to 7471133 (ppo-u.5 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 7471133 (ppo-u.5 coexpression data)

CoexMap"7471133"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO CC

GO MF

GO:0003723 [list] [network] RNA binding

(1480 genes)

IEA

Protein

XP_052306848.1 [sequence] [blastp]
XP_052306850.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 6, cyto 1, chlo 1, plas 1, extr 1, pero 1, cyto_E.R. 1	(predict for XP_052306848.1)
nucl 5, cyto 1, pero 1, cyto_pero 1	(predict for XP_052306850.1)

Subcellular
localization
TargetP

other 8	(predict for XP_052306848.1)
other 8	(predict for XP_052306850.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target		Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ppo-u.5 for 7471133	ppo-r.4 for 7471133	ppo-u.5 for 18096172	ppo-u.5 for 7490625	ppo-u.5 for 7493993	gma-u.5 for 100804648	gma-u.5 for 100790146	gma-u.5 for 100499751	mtr-u.5 for 11415491	mtr-u.5 for 11418512	mtr-u.5 for 11424590	ath-u.5 for AT1G20220	ath-u.5 for AT1G76010	ath-u.5 for AT3G07030	bra-r.6 for 103830627	bra-r.6 for 103835805	vvi-u.5 for 100257974	vvi-u.5 for 100254082	vvi-u.5 for 100254260	ghi-r.1 for 107922521	ghi-r.1 for 107917987	ghi-r.1 for 107912589	bna-r.1 for 106440745	bna-r.1 for 106431173	bna-r.1 for 106424962	cit-r.1 for 102624664	cit-r.1 for 102620254	cit-r.1 for 102618414	sly-u.5 for 101245250	sly-u.5 for 101245178	sot-r.1 for 102579263	sot-r.1 for 102582242	sot-r.1 for 102602957	nta-r.1 for 107816710	nta-r.1 for 107798331	osa-u.5 for 4349880	osa-u.5 for 4334023	osa-u.5 for 4347736	zma-u.5 for 103625906	zma-u.5 for 100280198	zma-u.5 for 100276330	tae-r.2 for 123053309	tae-r.2 for 123091023	tae-r.2 for 123084813	hvu-r.1 for 123449533	hvu-r.1 for 123400204	hvu-r.1 for 123426723	sbi-r.1 for 8077605	sbi-r.1 for 8070680	sbi-r.1 for 8063330	bdi-r.1 for 100824218	bdi-r.1 for 100825987	bdi-r.1 for 100830556	cre-r.1 for CHLRE_09g409500v5

Ortholog

Ortholog ID: 549

Species

ppo

gma

mtr

ath

bra

vvi

ghi

bna

cit

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

Function^*

uncharacterized LOC7471133

glycine-rich cell wall structural protein 2

uncharacterized LOC7490625

protein argonaute 18

uncharacterized LOC100499751

alba-like protein C9orf23-like

ribonuclease P protein subunit p25-like protein

Alba DNA/RNA-binding protein

pro-resilin

glycine-rich cell wall structural protein 1.0

TATA-binding protein-associated factor 2N

uncharacterized LOC100254082

uncharacterized LOC100254260

uncharacterized LOC100265751

ribonuclease P protein subunit p25-like protein

uncharacterized LOC107945503

protein FAM98A

TATA-binding protein-associated factor 2N

myosin heavy chain IB

uncharacterized LOC102618414

uncharacterized LOC102629394

uncharacterized LOC102611231

uncharacterized LOC101245250

uncharacterized LOC101248712

ribonuclease P protein subunit p25-like protein

RNA-binding protein FUS

uncharacterized LOC107816710

uncharacterized LOC107798331

uncharacterized LOC107821405

uncharacterized LOC4349880

uncharacterized LOC4334023

uncharacterized LOC4347736

zinc finger CCCH domain-containing protein 4

H/ACA ribonucleoprotein complex subunit 1

protein argonaute 18

TATA-binding protein-associated factor 2N

protein argonaute 18-like

ribonuclease P protein subunit p25-like protein

glycine-rich cell wall structural protein 1.0-like

ribonuclease P protein subunit p25-like protein

RNA-binding protein FUS

glycine-rich protein DOT1

cold and drought-regulated protein CORA

glycine-rich cell wall structural protein 1.8

glycine-rich cell wall structural protein 1.0

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03020	RNA polymerase	3
ppo03420	Nucleotide excision repair	3
ppo03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03010	Ribosome	15

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03040	Spliceosome	7
gma03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03010	Ribosome	16

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03010	Ribosome	17

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03010	Ribosome	12
mtr03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03040	Spliceosome	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03010	Ribosome	10
mtr03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03040	Spliceosome	3
ath03015	mRNA surveillance pathway	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03040	Spliceosome	5
ath03015	mRNA surveillance pathway	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03040	Spliceosome	3
ath03015	mRNA surveillance pathway	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03010	Ribosome	2
bra03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03015	mRNA surveillance pathway	3
bra03010	Ribosome	2
bra03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03010	Ribosome	4
vvi03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03010	Ribosome	3
vvi03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03010	Ribosome	11

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03010	Ribosome	5
ghi03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03008	Ribosome biogenesis in eukaryotes	6
ghi03083	Polycomb repressive complex	6
ghi04712	Circadian rhythm - plant	6
ghi03010	Ribosome	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03010	Ribosome	4
cit03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03013	Nucleocytoplasmic transport	2
cit03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03040	Spliceosome	4
sly03015	mRNA surveillance pathway	2
sly03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03008	Ribosome biogenesis in eukaryotes	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03008	Ribosome biogenesis in eukaryotes	6
sot03010	Ribosome	2
sot03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03040	Spliceosome	6
nta03013	Nucleocytoplasmic transport	2
nta03015	mRNA surveillance pathway	2
nta03060	Protein export	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00790	Folate biosynthesis	3
nta01240	Biosynthesis of cofactors	3
nta00350	Tyrosine metabolism	2
nta00360	Phenylalanine metabolism	2
nta00380	Tryptophan metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03040	Spliceosome	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03010	Ribosome	18

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04142	Lysosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03010	Ribosome	7
zma03008	Ribosome biogenesis in eukaryotes	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03008	Ribosome biogenesis in eukaryotes	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03008	Ribosome biogenesis in eukaryotes	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03008	Ribosome biogenesis in eukaryotes	7
tae03010	Ribosome	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03008	Ribosome biogenesis in eukaryotes	3
hvu03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu01230	Biosynthesis of amino acids	3
hvu01210	2-Oxocarboxylic acid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03013	Nucleocytoplasmic transport	2
sbi03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03010	Ribosome	4
sbi03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03010	Ribosome	8

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03018	RNA degradation	4
bdi03030	DNA replication	2
bdi03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03040	Spliceosome	4
bdi03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre00190	Oxidative phosphorylation	2

Expression

Expression pattern

Entrez Gene ID^*

7471133

18096172

7490625

100804648

100499751

100818986

11418512

11424590

11423680

838610

843932

3768790

103830627

103835805

103872818

100254082

100254260

100265751

107905538

107928088

107945503

106440745

111202938

106347081

102618414

102629394

102611231

101245250

101248712

102579263

102602957

107816710

107798331

107821405

4349880

4334023

4347736

103641093

109944067

123091023

123084813

123093270

123400204

123426723

123447696

8077605

8070680

8060512

100825987

100830556

100833329

66054874

The preparation time of this page was 0.3 [sec].


Species	ppo	gma	mtr	ath	bra	vvi	ghi	bna	cit	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	5	3	3	3	2	3	3	3	3	2	3	2	3	3	3	3	3	3	1

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 7471133 (ppo-u.5 coexpression data)

Top 50 enrichment test to 7471133 (ppo-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**