ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
zma-u.5	100280198	Alba DNA/RNA-binding protein
zma-r.6	100280198	Alba DNA/RNA-binding protein
zma-m.5	100280198	Alba DNA/RNA-binding protein
zma-u.5	103625906	glycine-rich cell wall structural protein 1.8
zma-u.5	100276330	uncharacterized LOC100276330
zma-u.5	109944067	H/ACA ribonucleoprotein complex subunit 1
sbi-r.1	8077605	ribonuclease P protein subunit p25-like protein
sbi-r.1	8070680	RNA-binding protein FUS
sbi-r.1	8063330	ribonuclease P protein subunit p25-like protein
osa-u.5	4347736	uncharacterized LOC4347736
osa-u.5	9269193	uncharacterized LOC9269193
osa-u.5	4331735	uncharacterized LOC4331735
tae-r.2	123045466	ribonuclease P protein subunit p25
tae-r.2	123091023	protein argonaute 18
tae-r.2	123189211	ribonuclease P protein subunit p25
hvu-r.1	123449533	TATA-binding protein-associated factor 2N-like
hvu-r.1	123447986	heterogeneous nuclear ribonucleoproteins A1 homolog
hvu-r.1	123447696	glycine-rich cell wall structural protein 1.0-like
bdi-r.1	100824218	uncharacterized LOC100824218
bdi-r.1	100825987	cold and drought-regulated protein CORA
bdi-r.1	100830556	glycine-rich cell wall structural protein 1.8
ath-u.5	AT1G20220	Alba DNA/RNA-binding protein
ath-u.5	AT1G76010	Alba DNA/RNA-binding protein
ath-u.5	AT3G07030	Alba DNA/RNA-binding protein
gma-u.5	100499751	uncharacterized LOC100499751
gma-u.5	100790146	ribonuclease P protein subunit p25-like protein
gma-u.5	100802967	ribonuclease P protein subunit p25-like protein
sly-u.5	101245178	uncharacterized LOC101245178
sly-u.5	101245250	uncharacterized LOC101245250
bra-r.6	103835805	glycine-rich cell wall structural protein 1.0
bra-r.6	103830627	pro-resilin
vvi-u.5	100265751	uncharacterized LOC100265751
vvi-u.5	100257974	uncharacterized LOC100257974
vvi-u.5	100254260	uncharacterized LOC100254260
ppo-u.5	18096172	glycine-rich cell wall structural protein 2
ppo-u.5	7493993	uncharacterized LOC7493993
ppo-u.5	7492476	uncharacterized LOC7492476
mtr-u.5	11415491	glycine-rich protein DOT1
mtr-u.5	11424590	ribonuclease P protein subunit p25-like protein
mtr-u.5	11423680	ribonuclease P protein subunit p25-like protein
ghi-r.1	107905538	ribonuclease P protein subunit p25-like protein
ghi-r.1	107922521	ribonuclease P protein subunit p25-like protein
ghi-r.1	107917987	ribonuclease P protein subunit p25-like protein
bna-r.1	106440745	protein FAM98A
bna-r.1	106431173	polyribonucleotide nucleotidyltransferase-like
bna-r.1	106424962	protein argonaute 18
sot-r.1	102579263	ribonuclease P protein subunit p25-like protein
sot-r.1	102582242	protein argonaute 18-like
sot-r.1	102602957	RNA-binding protein FUS
cit-r.1	102624664	uncharacterized LOC102624664
cit-r.1	102620254	uncharacterized LOC102620254
cit-r.1	102618414	uncharacterized LOC102618414
nta-r.1	107816710	uncharacterized LOC107816710
nta-r.1	107798331	uncharacterized LOC107798331
cre-r.1	CHLRE_09g409500v5	uncharacterized protein

Top 50 coexpressed genes to 100280198 (zma-u.5 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 100280198 (zma-u.5 coexpression data)

CoexMap"100280198"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO CC

GO MF

GO:0003723 [list] [network] RNA binding

(1549 genes)

IEA

Protein

NP_001146602.1 [sequence] [blastp]
XP_008667852.1 [sequence] [blastp]

Subcellular
localization
wolf

cyto 4, nucl 3, extr 1, cysk_nucl 1	(predict for NP_001146602.1)
cyto 4, nucl 3, extr 1, cysk_nucl 1	(predict for XP_008667852.1)

Subcellular
localization
TargetP

other 6	(predict for NP_001146602.1)
other 6	(predict for XP_008667852.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target			Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	zma-u.5 for 100280198	zma-r.6 for 100280198	zma-m.5 for 100280198	zma-u.5 for 103625906	zma-u.5 for 100276330	zma-u.5 for 109944067	sbi-r.1 for 8077605	sbi-r.1 for 8070680	sbi-r.1 for 8063330	osa-u.5 for 4347736	osa-u.5 for 9269193	osa-u.5 for 4331735	tae-r.2 for 123045466	tae-r.2 for 123091023	tae-r.2 for 123189211	hvu-r.1 for 123449533	hvu-r.1 for 123447986	hvu-r.1 for 123447696	bdi-r.1 for 100824218	bdi-r.1 for 100825987	bdi-r.1 for 100830556	ath-u.5 for AT1G20220	ath-u.5 for AT1G76010	ath-u.5 for AT3G07030	gma-u.5 for 100499751	gma-u.5 for 100790146	gma-u.5 for 100802967	sly-u.5 for 101245178	sly-u.5 for 101245250	bra-r.6 for 103835805	bra-r.6 for 103830627	vvi-u.5 for 100265751	vvi-u.5 for 100257974	vvi-u.5 for 100254260	ppo-u.5 for 18096172	ppo-u.5 for 7493993	ppo-u.5 for 7492476	mtr-u.5 for 11415491	mtr-u.5 for 11424590	mtr-u.5 for 11423680	ghi-r.1 for 107905538	ghi-r.1 for 107922521	ghi-r.1 for 107917987	bna-r.1 for 106440745	bna-r.1 for 106431173	bna-r.1 for 106424962	sot-r.1 for 102579263	sot-r.1 for 102582242	sot-r.1 for 102602957	cit-r.1 for 102624664	cit-r.1 for 102620254	cit-r.1 for 102618414	nta-r.1 for 107816710	nta-r.1 for 107798331	cre-r.1 for CHLRE_09g409500v5

Ortholog

Ortholog ID: 549

Species

zma

sbi

osa

tae

hvu

bdi

ath

gma

sly

bra

vvi

ppo

mtr

ghi

bna

sot

cit

nta

cre

Symbol

Function^*

H/ACA ribonucleoprotein complex subunit 1

zinc finger CCCH domain-containing protein 4

ribonuclease P protein subunit p25-like protein

RNA-binding protein FUS

glycine-rich protein DOT1

uncharacterized LOC4347736

uncharacterized LOC4334023

uncharacterized LOC4349880

protein argonaute 18

TATA-binding protein-associated factor 2N

glycine-rich cell wall structural protein 1.0-like

ribonuclease P protein subunit p25-like protein

protein argonaute 18-like

cold and drought-regulated protein CORA

glycine-rich cell wall structural protein 1.8

glycine-rich cell wall structural protein 1.0

Alba DNA/RNA-binding protein

uncharacterized LOC100499751

protein argonaute 18

alba-like protein C9orf23-like

uncharacterized LOC101245250

uncharacterized LOC101248712

glycine-rich cell wall structural protein 1.0

pro-resilin

TATA-binding protein-associated factor 2N

uncharacterized LOC100265751

uncharacterized LOC100254260

uncharacterized LOC100254082

glycine-rich cell wall structural protein 2

uncharacterized LOC7490625

uncharacterized LOC7471133

ribonuclease P protein subunit p25-like protein

uncharacterized LOC107945503

protein FAM98A

TATA-binding protein-associated factor 2N

myosin heavy chain IB

ribonuclease P protein subunit p25-like protein

RNA-binding protein FUS

uncharacterized LOC102618414

uncharacterized LOC102629394

uncharacterized LOC102611231

uncharacterized LOC107816710

uncharacterized LOC107798331

uncharacterized LOC107821405

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03010	Ribosome	7
zma03008	Ribosome biogenesis in eukaryotes	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04142	Lysosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03013	Nucleocytoplasmic transport	2
sbi03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03010	Ribosome	4
sbi03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03010	Ribosome	18

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03040	Spliceosome	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03008	Ribosome biogenesis in eukaryotes	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03008	Ribosome biogenesis in eukaryotes	7
tae03010	Ribosome	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03008	Ribosome biogenesis in eukaryotes	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu01230	Biosynthesis of amino acids	3
hvu01210	2-Oxocarboxylic acid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03008	Ribosome biogenesis in eukaryotes	3
hvu03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03010	Ribosome	8

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03018	RNA degradation	4
bdi03030	DNA replication	2
bdi03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03040	Spliceosome	4
bdi03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03040	Spliceosome	3
ath03015	mRNA surveillance pathway	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03040	Spliceosome	5
ath03015	mRNA surveillance pathway	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03040	Spliceosome	3
ath03015	mRNA surveillance pathway	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03010	Ribosome	16

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03040	Spliceosome	7
gma03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03010	Ribosome	17

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03040	Spliceosome	4
sly03015	mRNA surveillance pathway	2
sly03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03008	Ribosome biogenesis in eukaryotes	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03010	Ribosome	2
bra03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03015	mRNA surveillance pathway	3
bra03010	Ribosome	2
bra03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03010	Ribosome	11

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03010	Ribosome	3
vvi03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03010	Ribosome	4
vvi03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03010	Ribosome	15

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03020	RNA polymerase	3
ppo03420	Nucleotide excision repair	3
ppo03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03040	Spliceosome	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03010	Ribosome	10
mtr03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03010	Ribosome	12
mtr03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03010	Ribosome	5
ghi03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03008	Ribosome biogenesis in eukaryotes	6
ghi03083	Polycomb repressive complex	6
ghi04712	Circadian rhythm - plant	6
ghi03010	Ribosome	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03008	Ribosome biogenesis in eukaryotes	6
sot03010	Ribosome	2
sot03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03010	Ribosome	4
cit03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03013	Nucleocytoplasmic transport	2
cit03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03040	Spliceosome	6
nta03013	Nucleocytoplasmic transport	2
nta03015	mRNA surveillance pathway	2
nta03060	Protein export	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00790	Folate biosynthesis	3
nta01240	Biosynthesis of cofactors	3
nta00350	Tyrosine metabolism	2
nta00360	Phenylalanine metabolism	2
nta00380	Tryptophan metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre00190	Oxidative phosphorylation	2

Expression

Expression pattern

Entrez Gene ID^*

109944067

103641093

8077605

8070680

8060512

4347736

4334023

4349880

123091023

123093270

123084813

123447696

123426723

123400204

100825987

100830556

100833329

838610

843932

3768790

100499751

100804648

100818986

101245250

101248712

103835805

103830627

103872818

100265751

100254260

100254082

18096172

7490625

7471133

11424590

11423680

11418512

107905538

107928088

107945503

106440745

111202938

106347081

102579263

102602957

102618414

102629394

102611231

107816710

107798331

107821405

66054874

The preparation time of this page was 0.2 [sec].


Species	zma	sbi	osa	tae	hvu	bdi	ath	gma	sly	bra	vvi	ppo	mtr	ghi	bna	sot	cit	nta	cre
Paralog	6	3	3	3	3	3	3	3	2	2	3	3	3	3	3	3	3	2	1

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 100280198 (zma-u.5 coexpression data)

Top 50 enrichment test to 100280198 (zma-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**