ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
ppo-u.5	7477632	protein TIC 20-I, chloroplastic
ppo-r.4	7477632	protein TIC 20-I, chloroplastic
ppo-m.4	7477632	protein TIC 20-I, chloroplastic
ppo-u.5	112325220	protein TIC 20-IV, chloroplastic
ppo-u.5	7479723	protein TIC 20-I, chloroplastic
gma-u.5	100790611	protein TIC 20-IV, chloroplastic
gma-u.5	100791350	uncharacterized LOC100791350
gma-u.5	100818669	protein TIC 20, chloroplastic
mtr-u.5	25491386	protein TIC 20, chloroplastic
mtr-u.5	25487601	protein TIC 20-IV, chloroplastic
mtr-u.5	25487600	protein TIC 20-IV, chloroplastic
ath-u.5	Tic20-IV	translocon at the inner envelope membrane of chloroplasts 20-IV
bra-r.6	103846701	protein TIC 20-IV, chloroplastic
bra-r.6	103844196	protein TIC 20-I, chloroplastic
vvi-u.5	100264361	protein TIC 20-I, chloroplastic
ghi-r.1	107948989	protein TIC 20-IV, chloroplastic
ghi-r.1	107915125	protein TIC 20-I, chloroplastic
ghi-r.1	121203539	protein TIC 20-I, chloroplastic
bna-r.1	106402311	protein TIC 20-IV, chloroplastic
bna-r.1	106400901	protein TIC 20-I, chloroplastic
cit-r.1	102614016	protein TIC 20-IV, chloroplastic
cit-r.1	102625332	protein TIC 20-I, chloroplastic
sly-u.5	101263407	protein TIC 20-I, chloroplastic
sly-u.5	101258263	protein TIC 20-I, chloroplastic
sot-r.1	102577670	protein TIC 20-I, chloroplastic
sot-r.1	102601586	protein TIC 20-I, chloroplastic-like
nta-r.1	107783083	protein TIC 20-I, chloroplastic
nta-r.1	107802816	protein TIC 20-I, chloroplastic
nta-r.1	142161758	protein TIC 20-I, chloroplastic-like
osa-u.5	4329976	protein TIC 20-I, chloroplastic
osa-u.5	4343643	protein TIC 20-I, chloroplastic
zma-u.5	100272545	Tic20-like protein
zma-u.5	100273053	uncharacterized LOC100273053
zma-u.5	100282929	tic20-like protein
tae-r.2	123052365	protein TIC 20-I, chloroplastic
tae-r.2	123127775	protein TIC 20-I, chloroplastic
tae-r.2	123144825	protein TIC 20-I, chloroplastic
hvu-r.1	123425650	protein TIC 20-I, chloroplastic-like
hvu-r.1	123406403	protein TIC 20-I, chloroplastic-like
sbi-r.1	8081768	protein TIC 20-I, chloroplastic
sbi-r.1	8072461	protein TIC 20-I, chloroplastic
bdi-r.1	104584251	protein TIC 20-I, chloroplastic
bdi-r.1	100826365	protein TIC 20-I, chloroplastic
cre-r.1	CHLRE_08g379650v5	uncharacterized protein

Top 50 coexpressed genes to 7477632 (ppo-u.5 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 7477632 (ppo-u.5 coexpression data)

CoexMap"7477632"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO CC

GO MF

Protein

XP_002307678.1 [sequence] [blastp]
XP_052308709.1 [sequence] [blastp]

Subcellular
localization
wolf

chlo 9, mito 1, vacu 1	(predict for XP_002307678.1)
chlo 9, mito 1, vacu 1	(predict for XP_052308709.1)

Subcellular
localization
TargetP

chlo 8, other 3	(predict for XP_002307678.1)
chlo 9	(predict for XP_052308709.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target			Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ppo-u.5 for 7477632	ppo-r.4 for 7477632	ppo-m.4 for 7477632	ppo-u.5 for 112325220	ppo-u.5 for 7479723	gma-u.5 for 100790611	gma-u.5 for 100791350	gma-u.5 for 100818669	mtr-u.5 for 25491386	mtr-u.5 for 25487601	mtr-u.5 for 25487600	ath-u.5 for Tic20-IV	bra-r.6 for 103846701	bra-r.6 for 103844196	vvi-u.5 for 100264361	ghi-r.1 for 107948989	ghi-r.1 for 107915125	ghi-r.1 for 121203539	bna-r.1 for 106402311	bna-r.1 for 106400901	cit-r.1 for 102614016	cit-r.1 for 102625332	sly-u.5 for 101263407	sly-u.5 for 101258263	sot-r.1 for 102577670	sot-r.1 for 102601586	nta-r.1 for 107783083	nta-r.1 for 107802816	nta-r.1 for 142161758	osa-u.5 for 4329976	osa-u.5 for 4343643	zma-u.5 for 100272545	zma-u.5 for 100273053	zma-u.5 for 100282929	tae-r.2 for 123052365	tae-r.2 for 123127775	tae-r.2 for 123144825	hvu-r.1 for 123425650	hvu-r.1 for 123406403	sbi-r.1 for 8081768	sbi-r.1 for 8072461	bdi-r.1 for 104584251	bdi-r.1 for 100826365	cre-r.1 for CHLRE_08g379650v5

Ortholog

Ortholog ID: 2746

Species

ppo

gma

mtr

ath

bra

vvi

ghi

bna

cit

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

Function^*

protein TIC 20-I, chloroplastic

protein TIC 20-IV, chloroplastic

protein TIC 20-I, chloroplastic

protein TIC 20-IV, chloroplastic

uncharacterized LOC100791350

protein TIC 20, chloroplastic

protein TIC 20-IV, chloroplastic

translocon at the inner envelope membrane of chloroplasts 20-IV

protein TIC 20-IV, chloroplastic

protein TIC 20-I, chloroplastic

protein TIC 20-IV, chloroplastic

protein TIC 20-I, chloroplastic

protein TIC 20-IV, chloroplastic-like

protein TIC 20-IV, chloroplastic

protein TIC 20-I, chloroplastic

protein TIC 20-I, chloroplastic-like

protein TIC 20-I, chloroplastic

protein TIC 20-I, chloroplastic-like

protein TIC 20-I, chloroplastic

Tic20-like protein

uncharacterized LOC100273053

tic20-like protein

protein TIC 20-I, chloroplastic

protein TIC 20-I, chloroplastic-like

protein TIC 20-I, chloroplastic

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03010	Ribosome	7

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04141	Protein processing in endoplasmic reticulum	6
ppo03040	Spliceosome	3
ppo04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03010	Ribosome	4
ppo00290	Valine, leucine and isoleucine biosynthesis	2
ppo00770	Pantothenate and CoA biosynthesis	2
ppo01210	2-Oxocarboxylic acid metabolism	2
ppo01230	Biosynthesis of amino acids	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00513	Various types of N-glycan biosynthesis	2
gma04075	Plant hormone signal transduction	2
gma04626	Plant-pathogen interaction	2
gma00330	Arginine and proline metabolism	2
gma00410	beta-Alanine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03010	Ribosome	8
gma00860	Porphyrin metabolism	2
gma01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03010	Ribosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04141	Protein processing in endoplasmic reticulum	2
mtr03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04141	Protein processing in endoplasmic reticulum	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04141	Protein processing in endoplasmic reticulum	4
ath03050	Proteasome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04141	Protein processing in endoplasmic reticulum	7
bra03040	Spliceosome	3
bra04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03010	Ribosome	12

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi00860	Porphyrin metabolism	3
vvi01240	Biosynthesis of cofactors	3
vvi01200	Carbon metabolism	3
vvi01230	Biosynthesis of amino acids	3
vvi00710	Carbon fixation by Calvin cycle	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03010	Ribosome	7
ghi01230	Biosynthesis of amino acids	7
ghi00261	Monobactam biosynthesis	5
ghi00300	Lysine biosynthesis	5
ghi00970	Aminoacyl-tRNA biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03010	Ribosome	2
ghi00195	Photosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03010	Ribosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03018	RNA degradation	4
bna04141	Protein processing in endoplasmic reticulum	3
bna03083	Polycomb repressive complex	2
bna04120	Ubiquitin mediated proteolysis	2
bna03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03010	Ribosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04141	Protein processing in endoplasmic reticulum	4
bna03083	Polycomb repressive complex	3
bna04120	Ubiquitin mediated proteolysis	3
bna03018	RNA degradation	2
bna03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit04141	Protein processing in endoplasmic reticulum	6
cit03040	Spliceosome	2
cit04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit04141	Protein processing in endoplasmic reticulum	2
cit03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly01240	Biosynthesis of cofactors	2
sly00970	Aminoacyl-tRNA biosynthesis	2
sly03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00061	Fatty acid biosynthesis	2
nta00620	Pyruvate metabolism	2
nta00640	Propanoate metabolism	2
nta01200	Carbon metabolism	2
nta01212	Fatty acid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00061	Fatty acid biosynthesis	2
nta00620	Pyruvate metabolism	2
nta00640	Propanoate metabolism	2
nta01200	Carbon metabolism	2
nta01212	Fatty acid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa00860	Porphyrin metabolism	4
osa01240	Biosynthesis of cofactors	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03010	Ribosome	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04142	Lysosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03010	Ribosome	6
tae03060	Protein export	3
tae03015	mRNA surveillance pathway	3
tae00860	Porphyrin metabolism	2
tae01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae01240	Biosynthesis of cofactors	3
tae00740	Riboflavin metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03010	Ribosome	4
tae03015	mRNA surveillance pathway	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03010	Ribosome	7
hvu00860	Porphyrin metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu00290	Valine, leucine and isoleucine biosynthesis	2
hvu00660	C5-Branched dibasic acid metabolism	2
hvu01210	2-Oxocarboxylic acid metabolism	2
hvu01230	Biosynthesis of amino acids	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi00860	Porphyrin metabolism	2
sbi01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03010	Ribosome	4
bdi03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03010	Ribosome	4
bdi03040	Spliceosome	2
bdi04141	Protein processing in endoplasmic reticulum	2
bdi04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre01230	Biosynthesis of amino acids	2

Expression

Expression pattern

Entrez Gene ID^*

7477632

112325220

7479723

100790611

100791350

25491386

25487601

25487600

827972

103846701

103844196

100264361

121203539

107935051

107898937

106402311

106400901

111211887

102614016

102625332

101263407

101258263

102577670

102601586

107783083

142161758

142166397

4329976

4343643

100272545

100273053

100282929

123052365

123144825

123044498

123425650

123406403

8081768

8072461

104584251

100826365

5719882

The preparation time of this page was 0.2 [sec].


Species	ppo	gma	mtr	ath	bra	vvi	ghi	bna	cit	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	5	3	3	1	2	1	3	2	2	2	2	3	2	3	3	2	2	2	1

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 7477632 (ppo-u.5 coexpression data)

Top 50 enrichment test to 7477632 (ppo-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**