ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
ppo-u.5	7486359	myosin-1
ppo-r.4	7486359	myosin-1
ppo-m.4	7486359	myosin-1
ppo-u.5	7460857	myosin-2
ppo-u.5	7457168	myosin-1
ppo-u.5	18095652	myosin-2
gma-u.5	100802614	myosin-2
gma-u.5	100801876	myosin-12
gma-u.5	100819335	myosin-16
mtr-u.5	11424673	myosin-1
mtr-u.5	11407286	myosin-2
mtr-u.5	25482851	myosin-1
ath-u.5	ATM1	myosin 1
ath-u.5	VIIIB	P-loop containing nucleoside triphosphate hydrolases superfamily protein
ath-u.5	ATM2	myosin 2
bra-r.6	103867081	myosin-4
bra-r.6	103844886	myosin-2
bra-r.6	103871351	myosin-3
vvi-u.5	100241905	myosin-2
vvi-u.5	100254832	myosin-1
ghi-r.1	107886881	myosin-1
ghi-r.1	107894058	myosin-1
ghi-r.1	107903530	myosin-2
bna-r.1	111201417	myosin-2
bna-r.1	111204550	myosin-1-like
bna-r.1	125599269	myosin-1-like
cit-r.1	102621697	myosin-1
cit-r.1	102625476	myosin-2
sly-u.5	101246187	myosin-2-like
sly-u.5	101253239	myosin-1
sly-u.5	101267827	myosin-2-like
sot-r.1	102585099	myosin-2-like
sot-r.1	102590068	myosin-2-like
sot-r.1	102601244	myosin-1
nta-r.1	107806983	myosin-1-like
nta-r.1	107830904	myosin-2
nta-r.1	107810704	myosin-1
osa-u.5	4348961	myosin-1
osa-u.5	4343605	myosin-1
zma-u.5	606398	myosin 1
zma-u.5	103647272	myosin-3
zma-u.5	103634337	myosin-1
tae-r.2	123052399	myosin-3
tae-r.2	543045	myosin-3
tae-r.2	123044548	myosin-3
hvu-r.1	123425699	myosin-3-like
hvu-r.1	123432090	myosin-1-like
sbi-r.1	8081749	myosin-3
sbi-r.1	8067384	myosin-1
bdi-r.1	100825630	myosin-1
bdi-r.1	100828969	myosin-3
cre-r.1	CHLRE_09g416250v5	uncharacterized protein

Top 50 coexpressed genes to 7486359 (ppo-u.5 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 7486359 (ppo-u.5 coexpression data)

CoexMap""

[Cytoscape]

Annotation

functional annotation

Function

myosin-1

KEGG

pop04814 [list] [network] Motor proteins (105 genes)

GO BP

GO:0030050 [list] [network] vesicle transport along actin filament	(14 genes)	IEA
GO:0007015 [list] [network] actin filament organization	(95 genes)	IEA

GO CC

GO:0016459 [list] [network] myosin complex	(18 genes)	IEA
GO:0015629 [list] [network] actin cytoskeleton	(71 genes)	IEA
GO:0031982 [list] [network] vesicle	(387 genes)	IEA
GO:0005737 [list] [network] cytoplasm	(6111 genes)	IEA

GO MF

GO:0000146 [list] [network] microfilament motor activity	(14 genes)	IEA
GO:0051015 [list] [network] actin filament binding	(88 genes)	IEA
GO:0005524 [list] [network] ATP binding	(2559 genes)	IEA

Protein

XP_002307152.1 [sequence] [blastp]
XP_024457512.1 [sequence] [blastp]
XP_024457513.1 [sequence] [blastp]
XP_024457514.1 [sequence] [blastp]
XP_024457516.1 [sequence] [blastp]

Subcellular
localization
wolf

vacu 4, chlo 1, nucl 1, golg 1, plas 1, extr 1, E.R. 1, cyto_nucl 1, chlo_mito 1, cysk_nucl 1, E.R._plas 1	(predict for XP_002307152.1)
vacu 4, chlo 1, nucl 1, golg 1, plas 1, extr 1, E.R. 1, cyto_nucl 1, chlo_mito 1, cysk_nucl 1, E.R._plas 1	(predict for XP_024457512.1)
vacu 4, chlo 1, nucl 1, golg 1, plas 1, extr 1, E.R. 1, cyto_nucl 1, chlo_mito 1, cysk_nucl 1, E.R._plas 1	(predict for XP_024457513.1)
vacu 4, chlo 1, nucl 1, golg 1, plas 1, extr 1, E.R. 1, cyto_nucl 1, chlo_mito 1, cysk_nucl 1, E.R._plas 1	(predict for XP_024457514.1)
vacu 4, chlo 1, nucl 1, golg 1, plas 1, extr 1, E.R. 1, cyto_nucl 1, chlo_mito 1, cysk_nucl 1, E.R._plas 1	(predict for XP_024457516.1)

Subcellular
localization
TargetP

chlo 5	(predict for XP_002307152.1)
chlo 5	(predict for XP_024457512.1)
chlo 5	(predict for XP_024457513.1)
chlo 5	(predict for XP_024457514.1)
chlo 5	(predict for XP_024457516.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target			Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ppo-u.5 for 7486359	ppo-r.4 for 7486359	ppo-m.4 for 7486359	ppo-u.5 for 7460857	ppo-u.5 for 7457168	ppo-u.5 for 18095652	gma-u.5 for 100802614	gma-u.5 for 100801876	gma-u.5 for 100819335	mtr-u.5 for 11424673	mtr-u.5 for 11407286	mtr-u.5 for 25482851	ath-u.5 for ATM1	ath-u.5 for VIIIB	ath-u.5 for ATM2	bra-r.6 for 103867081	bra-r.6 for 103844886	bra-r.6 for 103871351	vvi-u.5 for 100241905	vvi-u.5 for 100254832	ghi-r.1 for 107886881	ghi-r.1 for 107894058	ghi-r.1 for 107903530	bna-r.1 for 111201417	bna-r.1 for 111204550	bna-r.1 for 125599269	cit-r.1 for 102621697	cit-r.1 for 102625476	sly-u.5 for 101246187	sly-u.5 for 101253239	sly-u.5 for 101267827	sot-r.1 for 102585099	sot-r.1 for 102590068	sot-r.1 for 102601244	nta-r.1 for 107806983	nta-r.1 for 107830904	nta-r.1 for 107810704	osa-u.5 for 4348961	osa-u.5 for 4343605	zma-u.5 for 606398	zma-u.5 for 103647272	zma-u.5 for 103634337	tae-r.2 for 123052399	tae-r.2 for 543045	tae-r.2 for 123044548	hvu-r.1 for 123425699	hvu-r.1 for 123432090	sbi-r.1 for 8081749	sbi-r.1 for 8067384	bdi-r.1 for 100825630	bdi-r.1 for 100828969	cre-r.1 for CHLRE_09g416250v5

Please wait a moment.

Ortholog

Ortholog ID: 1150

Species

ppo

gma

mtr

ath

bra

vvi

ghi

bna

cit

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

ATM1

VIIIB

ATM2

Function^*

myosin-1

myosin-2

myosin-23

myosin-2

myosin-1

uncharacterized LOC25491221

myosin-2

myosin 1

P-loop containing nucleoside triphosphate hydrolases superfamily protein

myosin 2

myosin-2

myosin-3

myosin-2

myosin-1

myosin-1-like

myosin-1

myosin-2

myosin-2-like

myosin-1

myosin-2-like

myosin-1

myosin-1-like

myosin-2

myosin-1

myosin-3

myosin-1

uncharacterized LOC100277427

myosin-3

myosin-1

myosin-3-like

myosin-1-like

myosin-3

myosin-1

myosin-3

uncharacterized protein

Coexmap

Please wait a moment.

Coexpression

Please wait a moment.

KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03082	ATP-dependent chromatin remodeling	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04814	Motor proteins	3
ppo00310	Lysine degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04814	Motor proteins	8
gma00562	Inositol phosphate metabolism	4
gma04070	Phosphatidylinositol signaling system	2
gma00100	Steroid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04814	Motor proteins	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00562	Inositol phosphate metabolism	6
gma04814	Motor proteins	6
gma04070	Phosphatidylinositol signaling system	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00130	Ubiquinone and other terpenoid-quinone biosynthesis	2
mtr01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04142	Lysosome	2
mtr00511	Other glycan degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath00500	Starch and sucrose metabolism	4
ath01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04814	Motor proteins	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00940	Phenylpropanoid biosynthesis	13
bra00360	Phenylalanine metabolism	4
bra00130	Ubiquinone and other terpenoid-quinone biosynthesis	4
bra00941	Flavonoid biosynthesis	4
bra00945	Stilbenoid, diarylheptanoid and gingerol biosynthesis	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00562	Inositol phosphate metabolism	2
bra04070	Phosphatidylinositol signaling system	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04814	Motor proteins	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04144	Endocytosis	3
sly04814	Motor proteins	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04814	Motor proteins	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00350	Tyrosine metabolism	2
nta00360	Phenylalanine metabolism	2
nta00380	Tryptophan metabolism	2
nta00901	Indole alkaloid biosynthesis	2
nta00950	Isoquinoline alkaloid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04814	Motor proteins	7

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00500	Starch and sucrose metabolism	4
nta04814	Motor proteins	2
nta04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04712	Circadian rhythm - plant	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04712	Circadian rhythm - plant	4
zma04814	Motor proteins	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04814	Motor proteins	2
zma00790	Folate biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03013	Nucleocytoplasmic transport	2
zma03250	Viral life cycle - HIV-1	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00562	Inositol phosphate metabolism	3
tae04814	Motor proteins	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00562	Inositol phosphate metabolism	3
tae04814	Motor proteins	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04814	Motor proteins	3
tae04016	MAPK signaling pathway - plant	2
tae04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu00562	Inositol phosphate metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu00270	Cysteine and methionine metabolism	2
hvu01230	Biosynthesis of amino acids	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre04814	Motor proteins	2

Expression

Expression pattern

Entrez Gene ID^*

7486359

7457168

18095652

100802614

100782618

100802074

25482851

25491221

25502561

821534

828845

835516

103844886

103849539

100241905

100254832

107886881

107894058

107919879

125599269

106425131

106389303

102621697

102625476

101246187

101253239

101267827

102585099

102590068

102601244

107806983

107830904

107765078

4348961

4343605

103647272

103634337

100277427

123052399

543045

123181144

123425699

123432090

8081749

8067384

100825630

100828969

5722381

The preparation time of this page was 0.3 [sec].


Species	ppo	gma	mtr	ath	bra	vvi	ghi	bna	cit	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	6	3	3	3	3	2	3	3	2	3	3	3	2	3	3	2	2	2	1

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 7486359 (ppo-u.5 coexpression data)

Top 50 enrichment test to 7486359 (ppo-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**